Previous changeset 2:7a2e2e3cf836 (2024-04-04) |
Commit message:
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_labelmaps/ commit c86a1b93cb7732f7331a981d13465653cc1a2790 |
modified:
split_labelmap.py split_labelmap.xml |
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diff -r 7a2e2e3cf836 -r 0e7be7c35f15 split_labelmap.py --- a/split_labelmap.py Thu Apr 04 15:26:45 2024 +0000 +++ b/split_labelmap.py Wed Apr 24 08:13:26 2024 +0000 |
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@@ -1,11 +1,11 @@ import argparse import warnings +import giatools.io import numpy as np import scipy import skimage.draw import skimage.io -from imageio import imread as io_imread from skimage.measure import regionprops # split_label_image takes a label image and outputs a similar file with the given name where the labeled @@ -15,7 +15,7 @@ def split_labelmap(labelmap, outputfile): # Information from the label map. - label_img = io_imread(labelmap) + label_img = giatools.io.imread(labelmap) xtot, ytot = label_img.shape props = regionprops(label_img) N = len(props) |
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diff -r 7a2e2e3cf836 -r 0e7be7c35f15 split_labelmap.xml --- a/split_labelmap.xml Thu Apr 04 15:26:45 2024 +0000 +++ b/split_labelmap.xml Wed Apr 24 08:13:26 2024 +0000 |
[ |
@@ -1,4 +1,4 @@ -<tool id="ip_split_labelmap" name="Split label map using morphological operators" version="0.2-2"> +<tool id="ip_split_labelmap" name="Split label map using morphological operators" version="0.2-3" profile="20.05"> <description></description> <macros> <import>creators.xml</import> @@ -14,9 +14,10 @@ <xref type="bio.tools">galaxy_image_analysis</xref> </xrefs> <requirements> - <requirement type="package" version="0.14.2">scikit-image</requirement> - <requirement type="package" version="1.15.4">numpy</requirement> - <requirement type="package" version="0.15.1">tifffile</requirement> + <requirement type="package" version="0.18.1">scikit-image</requirement> + <requirement type="package" version="1.23.3">numpy</requirement> + <requirement type="package" version="2020.10.1">tifffile</requirement> + <requirement type="package" version="0.1">giatools</requirement> </requirements> <command detect_errors="aggressive"> <![CDATA[ |