| Previous changeset 15:3151a72a6671 (2019-09-03) Next changeset 17:1a766f9f623d (2019-09-16) |
|
Commit message:
Uploaded |
|
modified:
coverage2gff.py parse_aln.py |
|
added:
test-data/toolshed.g2.bx.psu.edu_repos_petr-novak_dante_dante_1.0.0.tgz |
| b |
| diff -r 3151a72a6671 -r 0e820310d4dc coverage2gff.py --- a/coverage2gff.py Tue Sep 03 05:20:02 2019 -0400 +++ b/coverage2gff.py Wed Sep 04 06:45:18 2019 -0400 |
| [ |
| @@ -36,7 +36,6 @@ d = {} for name, prof in zip(p, p): d[name[1:].strip()] = [int(i) for i in prof.split()] - print(d, file=sys.stderr) return d |
| b |
| diff -r 3151a72a6671 -r 0e820310d4dc parse_aln.py --- a/parse_aln.py Tue Sep 03 05:20:02 2019 -0400 +++ b/parse_aln.py Wed Sep 04 06:45:18 2019 -0400 |
| b |
| @@ -41,7 +41,7 @@ def get_header(f): - aln_header = ". : . : . : . : . : . :" + aln_header = " . : . : . : . : . : . :" contig_lead = "******************" aln_start = -1 while True: @@ -63,7 +63,7 @@ pos = f.tell() line = f.readline() # detect next contig or end of file - if "********" in line or line == "": + if "********" in line or line == "" or "Number of segment pairs = " in line: segment = False else: segment = True |
| b |
| diff -r 3151a72a6671 -r 0e820310d4dc test-data/toolshed.g2.bx.psu.edu_repos_petr-novak_dante_dante_1.0.0.tgz |
| b |
| Binary file test-data/toolshed.g2.bx.psu.edu_repos_petr-novak_dante_dante_1.0.0.tgz has changed |