| Previous changeset 33:bce45e9e6d70 (2017-02-06) Next changeset 35:5a38c0d33704 (2017-02-27) |
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Commit message:
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 5d191d65c509c913be62ec5b98328c7f36262fbc |
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modified:
macros.xml peptide_shaker.xml test-data/peptide_shaker_result1.zip test-data/searchgui_tinydb1.fasta test-data/tiny_searchgui_result1.zip test-data/tiny_searchgui_result_amandaonly.zip |
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| diff -r bce45e9e6d70 -r 0ebf3d3e4c90 macros.xml --- a/macros.xml Mon Feb 06 21:53:07 2017 -0500 +++ b/macros.xml Thu Feb 16 07:37:26 2017 -0500 |
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| @@ -49,7 +49,7 @@ </token> <token name="@SEARCHGUI_MAJOR_VERSION@">3</token> - <token name="@SEARCHGUI_VERSION@">3.2.5</token> + <token name="@SEARCHGUI_VERSION@">3.2.7</token> <xml name="general_options"> <section name="protein_digest_options" expanded="false" title="Protein Digestion Options"> |
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| diff -r bce45e9e6d70 -r 0ebf3d3e4c90 peptide_shaker.xml --- a/peptide_shaker.xml Mon Feb 06 21:53:07 2017 -0500 +++ b/peptide_shaker.xml Thu Feb 16 07:37:26 2017 -0500 |
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| @@ -1,4 +1,4 @@ -<tool id="peptide_shaker" name="Peptide Shaker" version="1.14.6"> +<tool id="peptide_shaker" name="Peptide Shaker" version="1.15.1"> <description> Perform protein identification using various search engines based on results from SearchGUI </description> @@ -6,7 +6,7 @@ <import>macros.xml</import> </macros> <requirements> - <requirement type="package" version="1.14.6">peptide-shaker</requirement> + <requirement type="package" version="1.15.1">peptide-shaker</requirement> </requirements> <expand macro="stdio" /> <command> |
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| diff -r bce45e9e6d70 -r 0ebf3d3e4c90 test-data/peptide_shaker_result1.zip |
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| Binary file test-data/peptide_shaker_result1.zip has changed |
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| diff -r bce45e9e6d70 -r 0ebf3d3e4c90 test-data/searchgui_tinydb1.fasta --- a/test-data/searchgui_tinydb1.fasta Mon Feb 06 21:53:07 2017 -0500 +++ b/test-data/searchgui_tinydb1.fasta Thu Feb 16 07:37:26 2017 -0500 |
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| @@ -18,7 +18,7 @@ MEKQGVETRQTVTTSRQSVNYKPFTQSKNIVINRVSLSPGTAMSTMQRSRSSMSSGLGLGGHLQAGVLGNISHKGVASMKLKREGEKKELQDLNERLANFIEQARFLEAENKALRDALNKSKKDFDPEPLKQMYQIEINEAKKLLDDANNDNGNLKVRINTLEDELEDLRAQLRHSNDVNDQLQNNIDTLNDDIARRIADNEMLKRKVQELEKQLADWKAKYAHVDTQLQGLRIDLQEETCQRLAESTRAQALEEELNFLRSVTDAEIKEYKAMLMKEDNVPQMREYWNNELSKCMREIRDEYDNQLNLLSADLESKYQVQLNEIRLGATKGNAESAQASEENRRLRSQITDKDSHMMDLQSQIDKLKSQVHLLTSELDSTTAELDNEKTLRVSEVQKLNTELEGVIKELQLLMDAKLSLELEIAAYRKLLEVEENRLSIGSMTQMVGGYRGQTEDALANILERSGASFEASSSMGESGRVTMQRSSKGVISIAEVDNTGRYVTLDNTSTTRMKRLQNLKGWKIKREFIRTNSLQELSFEYIINRDTSLDAQQNIRVWAKNFEKDPEIKPDDIISSVADWGQVNRNSIITLYDENGVEKATLTIKVVF >generic|cds.comp55448_c0_seq1|m.24261 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 96.04 EValue:0.0 MRRIKKKITLDVRVTELIDQLERQQKELEESRTYHQIDQEQIARQNQQLADLEGEISMLRRSIESLEKEKMRQSNILAKMNDELEKLRMDLNNETINHLDAENRRQTLEEELEFQKDVHAQELKELAALAYRDTTAENREFWRNELAQAIRDIQQEYDAKCDQMRGDIEAYYNLKVQEFRTGATKQNMEVTRNKEENTKLRSNMNEVRNRLADLEARNAQLERTNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMESILKELQDLMDIKLSLELEIAAYRKLLEGEESRVGMKQIVEQVVGARPNEAEVLSSILTRSEGGYEATGDSQISMKMMRGELAAKTTYQRTSKGPVSIKEADSQGQFIALETKKEENITGWKIVRKVDDNMVYSYEIPNVVLKTGTVIKIWSKSHQAQARGDDIVSRENDTWGTGSNVVTILQNEKGEEKANYTQNTVYQ ->generic|cds.comp55448_c0_seq1|m.24262 RecName: Full=60 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 91.49 EValue:5.0e-87 +>generic|cds.comp55448_c0_seq2|m.24262 RecName: Full=60 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 91.49 EValue:5.0e-87 MSGGFSYSAKIHPRTGYVSRTSQSPYRSSMGSNAAFTRSYEFNYGATAMPGAYANISSTGVNHVKANREREKQDMRDLNERFANYIEKVRFLEAQNKKLAGELEELKSKWGKETSAIKEMYETELEEARKLIDATNKEKNYLGRESN >generic|cds.comp8310_c0_seq2|m.1138 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 22.01 EValue:2.0e-16 FKDTCIRDKTDMKGLNERLSEFIEVARYNAILAKKLEKTIKRFHSQEIPEDVERIYEATIKKLRKLLVVFENERDNERAKNLKLQTECAKLKESLEDLKAKEIENRDRLISKFKILEDLQSKAIRIEKNIEIVAEENVLKNNKIEKLKKHFENLKSKITSERRNRSTHKESYDEVKEDFGIFKELKNQQLSSVRFPKYKDSIKYLRKQWSNEFSKCIKELQNEYESRVSSVKEELESNYCTKTEEIQNYVLKSNYESDFLKNRNLVAEESMNMLKNKFKEAKKENVLLNHEKEELEIEFNKSKNEYDHLAEEKNNEILNFKEYAEKILIQLTEILEINNHLQFEIEYYKTVITSGETKIDFDFDGLDDECMTSINSELP |
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| diff -r bce45e9e6d70 -r 0ebf3d3e4c90 test-data/tiny_searchgui_result1.zip |
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| Binary file test-data/tiny_searchgui_result1.zip has changed |
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| diff -r bce45e9e6d70 -r 0ebf3d3e4c90 test-data/tiny_searchgui_result_amandaonly.zip |
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| Binary file test-data/tiny_searchgui_result_amandaonly.zip has changed |