| Previous changeset 0:21b4cb068fab (2012-03-31) |
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Commit message:
Uploaded |
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added:
bed_window.py |
| b |
| diff -r 21b4cb068fab -r 0f849231e4e0 bed_window.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bed_window.py Sat Mar 31 14:05:49 2012 -0400 |
| [ |
| @@ -0,0 +1,19 @@ +def makeWindow(filename,outfile,window): + window = window/2 + f=open(filename) + out = open(outfile,'w') + for line in f: + flds = line.strip().split() + #new position + center = (int(flds[1]) + int(flds[2]))/2 + start = center - window + end = center + window + if start >= 0: + flds[1] = str(start) + flds[2] = str(end) + out.write('\t'.join(flds)+'\n') + f.close() + out.close() + +import sys +makeWindow(sys.argv[1],sys.argv[2],int(sys.argv[3])) |