| Previous changeset 1:43bb9308b52d (2017-09-19) Next changeset 3:f6c2ca9dd23f (2018-08-06) |
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Commit message:
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 81a83f06b49db32928ba0cd44e5b6d0431868d27 |
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modified:
README.rst analysis_load_fasta.xml macros.xml tripal.py |
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| diff -r 43bb9308b52d -r 0fbe72b81b9e README.rst --- a/README.rst Tue Sep 19 12:24:58 2017 -0400 +++ b/README.rst Thu Jun 21 08:48:27 2018 -0400 |
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| @@ -1,7 +1,7 @@ Galaxy-tripal ============= -Galaxy tools to interface with Tripal using pyhon-tripal +Galaxy tools to interface with Tripal using python-tripal Dependencies ------------ @@ -42,5 +42,4 @@ License ------- -All python scripts, wrappers, and the webapollo.py are licensed under -MIT license. +All python scripts and wrappers are licensed under MIT license. |
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| diff -r 43bb9308b52d -r 0fbe72b81b9e analysis_load_fasta.xml --- a/analysis_load_fasta.xml Tue Sep 19 12:24:58 2017 -0400 +++ b/analysis_load_fasta.xml Thu Jun 21 08:48:27 2018 -0400 |
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| @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="analysis_load_fasta" profile="16.04" name="Load a Fasta file" version="@WRAPPER_VERSION@.1"> +<tool id="analysis_load_fasta" profile="16.04" name="Load a Fasta file" version="@WRAPPER_VERSION@.2"> <description>into Tripal</description> <macros> <import>macros.xml</import> @@ -156,6 +156,7 @@ label="Regular expression to extract the accession from external DB" help="this regex will be applied on the fasta definition line to generate the accession from external DB" /> </section> + <expand macro="wait_for"/> </inputs> <outputs> <data format="txt" name="results" label="Load Fasta into Tripal" /> |
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| diff -r 43bb9308b52d -r 0fbe72b81b9e macros.xml --- a/macros.xml Tue Sep 19 12:24:58 2017 -0400 +++ b/macros.xml Thu Jun 21 08:48:27 2018 -0400 |
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| @@ -50,6 +50,15 @@ TRIPAILLE_GLOBAL_CONFIG_PATH='.auth.yml' ]]></token> + <xml name="wait_for"> + <param name="wait_for" + type="data" + format="data" + optional="true" + label="Run this only after the following dataset is ready" + help="Use this if you want to delay the job execution until some data is already loaded. The selected dataset will not be used for anything else."/> + </xml> + <xml name="test_result"> <assert_stderr> <has_text text="MissingSchema" /> |
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| diff -r 43bb9308b52d -r 0fbe72b81b9e tripal.py --- a/tripal.py Tue Sep 19 12:24:58 2017 -0400 +++ b/tripal.py Thu Jun 21 08:48:27 2018 -0400 |
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| @@ -1,7 +1,6 @@ import collections import os import time - from abc import abstractmethod import tripal |