| Previous changeset 11:68753d45815f (2019-09-13) Next changeset 13:3d5b2491c62b (2019-11-01) |
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Commit message:
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 02087ce2966cf8b4aac9197a41171e7f986c11d1-dirty" |
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modified:
main_macros.xml ml_visualization_ex.py search_model_validation.xml stacking_ensembles.py |
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| diff -r 68753d45815f -r 103aaea17119 main_macros.xml --- a/main_macros.xml Fri Sep 13 12:24:39 2019 -0400 +++ b/main_macros.xml Wed Oct 02 03:51:08 2019 -0400 |
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| @@ -421,27 +421,46 @@ <xml name="sl_mixed_input"> <conditional name="input_options"> - <param name="selected_input" type="select" label="Select input type:"> - <option value="tabular" selected="true">tabular data</option> - <option value="sparse">sparse matrix</option> - <option value="seq_fasta">sequnences in a fasta file</option> - <option value="refseq_and_interval">reference genome and intervals</option> - </param> - <when value="tabular"> - <expand macro="samples_tabular" multiple1="true" multiple2="false"/> - </when> - <when value="sparse"> - <expand macro="sparse_target"/> - </when> - <when value="seq_fasta"> - <expand macro="inputs_seq_fasta"/> - </when> - <when value="refseq_and_interval"> - <expand macro="inputs_refseq_and_interval"/> - </when> + <expand macro="data_input_options"/> + <expand macro="data_input_whens"/> </conditional> </xml> + <xml name="sl_mixed_input_plus_sequence"> + <conditional name="input_options"> + <expand macro="data_input_options"> + <option value="seq_fasta">sequnences in a fasta file</option> + <option value="refseq_and_interval">reference genome and intervals</option> + </expand> + <expand macro="data_input_whens"> + <when value="seq_fasta"> + <expand macro="inputs_seq_fasta"/> + </when> + <when value="refseq_and_interval"> + <expand macro="inputs_refseq_and_interval"/> + </when> + </expand> + </conditional> + </xml> + + <xml name="data_input_options"> + <param name="selected_input" type="select" label="Select input type:"> + <option value="tabular" selected="true">tabular data</option> + <option value="sparse">sparse matrix</option> + <yield/> + </param> + </xml> + + <xml name="data_input_whens"> + <when value="tabular"> + <expand macro="samples_tabular" multiple1="true" multiple2="false"/> + </when> + <when value="sparse"> + <expand macro="sparse_target"/> + </when> + <yield/> + </xml> + <xml name="input_tabular_target"> <param name="infile2" type="data" format="tabular" label="Dataset containing class labels or target values:"/> <param name="header2" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="Does the dataset contain header:" /> |
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| diff -r 68753d45815f -r 103aaea17119 ml_visualization_ex.py --- a/ml_visualization_ex.py Fri Sep 13 12:24:39 2019 -0400 +++ b/ml_visualization_ex.py Wed Oct 02 03:51:08 2019 -0400 |
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| @@ -146,7 +146,8 @@ precision["micro"], recall["micro"], _ = precision_recall_curve( df1.values.ravel(), df2.values.ravel(), pos_label=pos_label) ap['micro'] = average_precision_score( - df1.values, df2.values, average='micro', pos_label=pos_label or 1) + df1.values, df2.values, average='micro', + pos_label=pos_label or 1) data = [] for key in precision.keys(): @@ -201,7 +202,7 @@ ) data.append(trace) - trace = go.Scatter(x=[0, 1], y=[0, 1], + trace = go.Scatter(x=[0, 1], y=[0, 1], mode='lines', line=dict(color='black', dash='dash'), showlegend=False) |
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| diff -r 68753d45815f -r 103aaea17119 search_model_validation.xml --- a/search_model_validation.xml Fri Sep 13 12:24:39 2019 -0400 +++ b/search_model_validation.xml Wed Oct 02 03:51:08 2019 -0400 |
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| @@ -64,7 +64,7 @@ </section> </when> </conditional> - <expand macro="sl_mixed_input"/> + <expand macro="sl_mixed_input_plus_sequence"/> <conditional name="outer_split"> <param name="split_mode" type="select" label="Whether to hold a portion of samples for test exclusively?" help="Nested CV or train_test_split"> <option value="no" selected="true">Nope</option> |
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| diff -r 68753d45815f -r 103aaea17119 stacking_ensembles.py --- a/stacking_ensembles.py Fri Sep 13 12:24:39 2019 -0400 +++ b/stacking_ensembles.py Wed Oct 02 03:51:08 2019 -0400 |
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| @@ -11,7 +11,7 @@ from sklearn import ensemble from galaxy_ml.utils import (load_model, get_cv, get_estimator, - get_search_params) + get_search_params) warnings.filterwarnings('ignore') |