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Commit message:
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modified:
beagle_phase.sh |
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| diff -r 79abc9d00340 -r 10afd4b2847b beagle_phase.sh --- a/beagle_phase.sh Tue Oct 25 14:32:06 2016 -0400 +++ b/beagle_phase.sh Tue Oct 25 14:33:02 2016 -0400 |
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| @@ -1,17 +1,14 @@ #!/bin/bash - +# variable affectation vcf_input=$1 out="out_phased" +# create temporary directory directory=`dirname $0` - mkdir tmpdir$$ - cp -rf $vcf_input tmpdir$$/input.vcf - - +# launch beagle java -jar $directory/beagle.jar gt=$vcf_input out=$out - - +# remove temporary directory rm -rf tmpdir$$ \ No newline at end of file |