| Previous changeset 53:70574a6381ea (2014-12-11) Next changeset 55:543958f75e83 (2014-12-11) |
|
Commit message:
small fix |
|
modified:
datatypes_conf.xml xcms_differential_analysis.r |
| b |
| diff -r 70574a6381ea -r 10f3cb998c4e datatypes_conf.xml --- a/datatypes_conf.xml Thu Dec 11 14:09:27 2014 +0100 +++ b/datatypes_conf.xml Thu Dec 11 14:32:19 2014 +0100 |
| b |
| @@ -6,4 +6,8 @@ <datatype extension="msclust.csv" type="galaxy.datatypes.tabular:Tabular" mimetype="text/csv" display_in_upload="true" subclass="true"> </datatype> </registration> + <registration display_path="display_applications"> + <datatype extension="rdata" type="galaxy.datatypes.data:Data" mimetype="application/zip" > + </datatype> + </registration> </datatypes> \ No newline at end of file |
| b |
| diff -r 70574a6381ea -r 10f3cb998c4e xcms_differential_analysis.r --- a/xcms_differential_analysis.r Thu Dec 11 14:09:27 2014 +0100 +++ b/xcms_differential_analysis.r Thu Dec 11 14:32:19 2014 +0100 |
| b |
| @@ -49,6 +49,9 @@ # info: levels(xcmsSet@phenoData$class) also gives access to the class names dir.create(file.path(args.htmlReportFile.files_path), showWarnings = FALSE, recursive = TRUE) + # set cairo as default for png plots: + x11 = function (...) grDevices::x11(...,type='cairo') + # run diffreport reporttab <- diffreport(xsetData, args.class1, args.class2, paste(args.htmlReportFile.files_path,"/fig", sep=""), args.topcount, metlin = 0.15, h=480, w=640) # write out tsv table: |