Previous changeset 3:edca797fa2b2 (2018-05-15) Next changeset 5:98195057e06d (2018-05-15) |
Commit message:
planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty |
modified:
computeFraglen.xml computeGC.xml genMutModel.xml genSeqErrorModel.xml neat_genreads.xml |
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diff -r edca797fa2b2 -r 110fc7a9a016 computeFraglen.xml --- a/computeFraglen.xml Tue May 15 16:41:15 2018 -0400 +++ b/computeFraglen.xml Tue May 15 16:45:22 2018 -0400 |
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@@ -5,7 +5,8 @@ <description>computes empirical fragment length distribution from sample data in BAM format. Creates model file for use in NEAT-genReads</description> <requirements> <requirement type="package" version="0.1.19">samtools</requirement> - <requirement type="package" version="1.9.1">numpy</requirement> + <requirement type="package">numpy</requirement> + <requirement type="package">scipy</requirement> </requirements> <command detect_errors="exit_code"> <![CDATA[ |
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diff -r edca797fa2b2 -r 110fc7a9a016 computeGC.xml --- a/computeGC.xml Tue May 15 16:41:15 2018 -0400 +++ b/computeGC.xml Tue May 15 16:45:22 2018 -0400 |
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@@ -5,7 +5,8 @@ <description>computes GC% coverage bias distribution from sample in BAM format. Creates model file for use in NEAT-genReads</description> <requirements> <requirement type="package" version="2.25.0">bedtools</requirement> - <requirement type="package" version="1.9.1">numpy</requirement> + <requirement type="package">numpy</requirement> + <requirement type="package">scipy</requirement> </requirements> <command detect_errors="exit_code"> <![CDATA[ |
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diff -r edca797fa2b2 -r 110fc7a9a016 genMutModel.xml --- a/genMutModel.xml Tue May 15 16:41:15 2018 -0400 +++ b/genMutModel.xml Tue May 15 16:45:22 2018 -0400 |
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@@ -4,7 +4,8 @@ profile="16.04"> <description>generates a mutation model based on provided mutations. Creates model file for use in NEAT-genReads</description> <requirements> - <requirement type="package" version="1.9.1">numpy</requirement> + <requirement type="package">numpy</requirement> + <requirement type="package">scipy</requirement> <requirement type="package">matplotlib</requirement> </requirements> <command detect_errors="exit_code"> |
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diff -r edca797fa2b2 -r 110fc7a9a016 genSeqErrorModel.xml --- a/genSeqErrorModel.xml Tue May 15 16:41:15 2018 -0400 +++ b/genSeqErrorModel.xml Tue May 15 16:45:22 2018 -0400 |
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@@ -4,7 +4,8 @@ profile="16.04"> <description>generates sequence error model for genReads. Creates model file for use in NEAT-genReads</description> <requirements> - <requirement type="package" version="1.9.1">numpy</requirement> + <requirement type="package">numpy</requirement> + <requirement type="package">scipy</requirement> <requirement type="package">matplotlib</requirement> </requirements> <command detect_errors="exit_code"> |
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diff -r edca797fa2b2 -r 110fc7a9a016 neat_genreads.xml --- a/neat_genreads.xml Tue May 15 16:41:15 2018 -0400 +++ b/neat_genreads.xml Tue May 15 16:45:22 2018 -0400 |
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@@ -4,7 +4,8 @@ profile="16.04"> <description>is a fine-grained read simulator</description> <requirements> - <requirement type="package" version="1.9.1">numpy</requirement> + <requirement type="package">numpy</requirement> + <requirement type="package">scipy</requirement> </requirements> <command detect_errors="exit_code"> <![CDATA[ |