| Previous changeset 5:0f58b2dd873f (2017-10-16) Next changeset 7:cd9c123ab04f (2017-10-16) |
|
Commit message:
Uploaded |
|
added:
01_RemoveSNPs/RemoveSNPs.xml |
| b |
| diff -r 0f58b2dd873f -r 11377edbbea2 01_RemoveSNPs/RemoveSNPs.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/01_RemoveSNPs/RemoveSNPs.xml Mon Oct 16 14:12:23 2017 -0400 |
| [ |
| @@ -0,0 +1,35 @@ +<tool id="RemoveSNPs" name="Remove Mismatches (SNPs) from SAM Alignment file" version="0.1.0"> + <requirements> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + bash $__tool_directory__/RemoveSNPs "$SAM alignment files" 3 > "$output1" + ]]></command> + <inputs> + <param type="data" name="SAM alignment files" format="sam" /> + <param type="integer" name="SNPs/ mismatches allowed" value="3" /> + </inputs> + <outputs> + <data name="output1" format="sam" /> + </outputs> + <tests> + <test> + <param name="SAM alignment files" value="input.sam"/> + <output name="output1" file="output.sam"/> + </test> + </tests> + <help><![CDATA[ + This program will remove mismatches from sam file. + Usage: RemoveSNPs test.sam 3 + ]]></help> + <citations> + <citation type="bibtex"> +@misc{RemoveSNPs, + author = {Tanwar, Deepak}, + year = {2017}, + title = {RemoveSNPs}, + publisher = {GitHub}, + journal = {GitHub repository}, + url = {https://github.com/dktanwar/NGS_Sperm_H3K4me3_Planemo_tools/tree/master/01_RemoveSNPs}, +}</citation> + </citations> +</tool> |