| Previous changeset 1:f08636f56fd7 (2023-01-13) Next changeset 3:c2eccef98006 (2024-04-25) |
|
Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity_lib commit 65e4952f33eb335528e8553150e9097e5ea8f556 |
|
modified:
qiime2__diversity_lib__faith_pd.xml test-data/alpha_passthrough.test0.feature-table.qza test-data/beta_passthrough.test0.feature-table.qza test-data/beta_passthrough.test1.feature-table.qza test-data/beta_passthrough.test2.feature-table.qza test-data/beta_passthrough.test3.feature-table.qza test-data/beta_phylogenetic_meta_passthrough.test0.feature-table1.qza test-data/beta_phylogenetic_meta_passthrough.test0.feature-table2.qza test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny1.qza test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny2.qza test-data/beta_phylogenetic_meta_passthrough.test1.feature-table1.qza test-data/beta_phylogenetic_meta_passthrough.test1.feature-table2.qza test-data/beta_phylogenetic_meta_passthrough.test1.phylogeny.qza test-data/beta_phylogenetic_meta_passthrough.test2.feature-table1.qza test-data/beta_phylogenetic_meta_passthrough.test2.feature-table2.qza test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny1.qza test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny2.qza test-data/beta_phylogenetic_passthrough.test0.feature-table.qza test-data/beta_phylogenetic_passthrough.test0.phylogeny.qza test-data/beta_phylogenetic_passthrough.test1.feature-table.qza test-data/beta_phylogenetic_passthrough.test1.phylogeny.qza test-data/beta_phylogenetic_passthrough.test2.feature-table.qza test-data/beta_phylogenetic_passthrough.test2.phylogeny.qza test-data/beta_phylogenetic_passthrough.test3.feature-table.qza test-data/beta_phylogenetic_passthrough.test3.phylogeny.qza test-data/beta_phylogenetic_passthrough.test4.feature-table.qza test-data/beta_phylogenetic_passthrough.test4.phylogeny.qza test-data/beta_phylogenetic_passthrough.test5.feature-table.qza test-data/beta_phylogenetic_passthrough.test5.phylogeny.qza test-data/beta_phylogenetic_passthrough.test6.feature-table.qza test-data/beta_phylogenetic_passthrough.test6.phylogeny.qza test-data/bray_curtis.test0.feature-table.qza test-data/bray_curtis.test1.feature-table.qza test-data/bray_curtis.test2.feature-table.qza test-data/faith_pd.test0.feature-table.qza test-data/faith_pd.test0.phylogeny.qza test-data/jaccard.test0.feature-table.qza test-data/jaccard.test1.feature-table.qza test-data/jaccard.test2.feature-table.qza test-data/observed_features.test0.feature-table.qza test-data/pielou_evenness.test0.feature-table.qza test-data/pielou_evenness.test1.feature-table.qza test-data/shannon_entropy.test0.feature-table.qza test-data/shannon_entropy.test1.feature-table.qza test-data/unweighted_unifrac.test0.feature-table.qza test-data/unweighted_unifrac.test0.phylogeny.qza test-data/unweighted_unifrac.test1.feature-table.qza test-data/unweighted_unifrac.test1.phylogeny.qza test-data/unweighted_unifrac.test2.feature-table.qza test-data/unweighted_unifrac.test2.phylogeny.qza test-data/unweighted_unifrac.test3.feature-table.qza test-data/unweighted_unifrac.test3.phylogeny.qza test-data/weighted_unifrac.test0.feature-table.qza test-data/weighted_unifrac.test0.phylogeny.qza test-data/weighted_unifrac.test1.feature-table.qza test-data/weighted_unifrac.test1.phylogeny.qza test-data/weighted_unifrac.test2.feature-table.qza test-data/weighted_unifrac.test2.phylogeny.qza test-data/weighted_unifrac.test3.feature-table.qza test-data/weighted_unifrac.test3.phylogeny.qza |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 qiime2__diversity_lib__faith_pd.xml --- a/qiime2__diversity_lib__faith_pd.xml Fri Jan 13 22:50:28 2023 +0000 +++ b/qiime2__diversity_lib__faith_pd.xml Thu Jun 08 19:42:09 2023 +0000 |
| [ |
| @@ -6,14 +6,14 @@ --> <!-- This tool was automatically generated by: - q2galaxy (version: 2022.11.1) + q2galaxy (version: 2023.5.0) for: - qiime2 (version: 2022.11.1) + qiime2 (version: 2023.5.1) --> -<tool name="qiime2 diversity-lib faith-pd" id="qiime2__diversity_lib__faith_pd" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 diversity-lib faith-pd" id="qiime2__diversity_lib__faith_pd" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> <description>Faith's Phylogenetic Diversity</description> <requirements> - <container type="docker">quay.io/qiime2/core:2022.11</container> + <container type="docker">quay.io/qiime2/core:2023.5</container> </requirements> <version_command>q2galaxy version diversity_lib</version_command> <command detect_errors="exit_code">q2galaxy run diversity_lib faith_pd '$inputs'</command> @@ -23,9 +23,9 @@ <inputs> <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required] The feature table containing the samples for which Faith's phylogenetic diversity should be computed. Table values will be converted to presence/absence."> <options options_filter_attribute="metadata.semantic_type"> - <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> <filter type="add_value" value="FeatureTable[Frequency]"/> + <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> </options> <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> </param> |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/alpha_passthrough.test0.feature-table.qza |
| b |
| Binary file test-data/alpha_passthrough.test0.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_passthrough.test0.feature-table.qza |
| b |
| Binary file test-data/beta_passthrough.test0.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_passthrough.test1.feature-table.qza |
| b |
| Binary file test-data/beta_passthrough.test1.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_passthrough.test2.feature-table.qza |
| b |
| Binary file test-data/beta_passthrough.test2.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_passthrough.test3.feature-table.qza |
| b |
| Binary file test-data/beta_passthrough.test3.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_meta_passthrough.test0.feature-table1.qza |
| b |
| Binary file test-data/beta_phylogenetic_meta_passthrough.test0.feature-table1.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_meta_passthrough.test0.feature-table2.qza |
| b |
| Binary file test-data/beta_phylogenetic_meta_passthrough.test0.feature-table2.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny1.qza |
| b |
| Binary file test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny1.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny2.qza |
| b |
| Binary file test-data/beta_phylogenetic_meta_passthrough.test0.phylogeny2.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_meta_passthrough.test1.feature-table1.qza |
| b |
| Binary file test-data/beta_phylogenetic_meta_passthrough.test1.feature-table1.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_meta_passthrough.test1.feature-table2.qza |
| b |
| Binary file test-data/beta_phylogenetic_meta_passthrough.test1.feature-table2.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_meta_passthrough.test1.phylogeny.qza |
| b |
| Binary file test-data/beta_phylogenetic_meta_passthrough.test1.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_meta_passthrough.test2.feature-table1.qza |
| b |
| Binary file test-data/beta_phylogenetic_meta_passthrough.test2.feature-table1.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_meta_passthrough.test2.feature-table2.qza |
| b |
| Binary file test-data/beta_phylogenetic_meta_passthrough.test2.feature-table2.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny1.qza |
| b |
| Binary file test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny1.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny2.qza |
| b |
| Binary file test-data/beta_phylogenetic_meta_passthrough.test2.phylogeny2.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_passthrough.test0.feature-table.qza |
| b |
| Binary file test-data/beta_phylogenetic_passthrough.test0.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_passthrough.test0.phylogeny.qza |
| b |
| Binary file test-data/beta_phylogenetic_passthrough.test0.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_passthrough.test1.feature-table.qza |
| b |
| Binary file test-data/beta_phylogenetic_passthrough.test1.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_passthrough.test1.phylogeny.qza |
| b |
| Binary file test-data/beta_phylogenetic_passthrough.test1.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_passthrough.test2.feature-table.qza |
| b |
| Binary file test-data/beta_phylogenetic_passthrough.test2.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_passthrough.test2.phylogeny.qza |
| b |
| Binary file test-data/beta_phylogenetic_passthrough.test2.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_passthrough.test3.feature-table.qza |
| b |
| Binary file test-data/beta_phylogenetic_passthrough.test3.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_passthrough.test3.phylogeny.qza |
| b |
| Binary file test-data/beta_phylogenetic_passthrough.test3.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_passthrough.test4.feature-table.qza |
| b |
| Binary file test-data/beta_phylogenetic_passthrough.test4.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_passthrough.test4.phylogeny.qza |
| b |
| Binary file test-data/beta_phylogenetic_passthrough.test4.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_passthrough.test5.feature-table.qza |
| b |
| Binary file test-data/beta_phylogenetic_passthrough.test5.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_passthrough.test5.phylogeny.qza |
| b |
| Binary file test-data/beta_phylogenetic_passthrough.test5.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_passthrough.test6.feature-table.qza |
| b |
| Binary file test-data/beta_phylogenetic_passthrough.test6.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/beta_phylogenetic_passthrough.test6.phylogeny.qza |
| b |
| Binary file test-data/beta_phylogenetic_passthrough.test6.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/bray_curtis.test0.feature-table.qza |
| b |
| Binary file test-data/bray_curtis.test0.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/bray_curtis.test1.feature-table.qza |
| b |
| Binary file test-data/bray_curtis.test1.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/bray_curtis.test2.feature-table.qza |
| b |
| Binary file test-data/bray_curtis.test2.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/faith_pd.test0.feature-table.qza |
| b |
| Binary file test-data/faith_pd.test0.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/faith_pd.test0.phylogeny.qza |
| b |
| Binary file test-data/faith_pd.test0.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/jaccard.test0.feature-table.qza |
| b |
| Binary file test-data/jaccard.test0.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/jaccard.test1.feature-table.qza |
| b |
| Binary file test-data/jaccard.test1.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/jaccard.test2.feature-table.qza |
| b |
| Binary file test-data/jaccard.test2.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/observed_features.test0.feature-table.qza |
| b |
| Binary file test-data/observed_features.test0.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/pielou_evenness.test0.feature-table.qza |
| b |
| Binary file test-data/pielou_evenness.test0.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/pielou_evenness.test1.feature-table.qza |
| b |
| Binary file test-data/pielou_evenness.test1.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/shannon_entropy.test0.feature-table.qza |
| b |
| Binary file test-data/shannon_entropy.test0.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/shannon_entropy.test1.feature-table.qza |
| b |
| Binary file test-data/shannon_entropy.test1.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/unweighted_unifrac.test0.feature-table.qza |
| b |
| Binary file test-data/unweighted_unifrac.test0.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/unweighted_unifrac.test0.phylogeny.qza |
| b |
| Binary file test-data/unweighted_unifrac.test0.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/unweighted_unifrac.test1.feature-table.qza |
| b |
| Binary file test-data/unweighted_unifrac.test1.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/unweighted_unifrac.test1.phylogeny.qza |
| b |
| Binary file test-data/unweighted_unifrac.test1.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/unweighted_unifrac.test2.feature-table.qza |
| b |
| Binary file test-data/unweighted_unifrac.test2.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/unweighted_unifrac.test2.phylogeny.qza |
| b |
| Binary file test-data/unweighted_unifrac.test2.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/unweighted_unifrac.test3.feature-table.qza |
| b |
| Binary file test-data/unweighted_unifrac.test3.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/unweighted_unifrac.test3.phylogeny.qza |
| b |
| Binary file test-data/unweighted_unifrac.test3.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/weighted_unifrac.test0.feature-table.qza |
| b |
| Binary file test-data/weighted_unifrac.test0.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/weighted_unifrac.test0.phylogeny.qza |
| b |
| Binary file test-data/weighted_unifrac.test0.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/weighted_unifrac.test1.feature-table.qza |
| b |
| Binary file test-data/weighted_unifrac.test1.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/weighted_unifrac.test1.phylogeny.qza |
| b |
| Binary file test-data/weighted_unifrac.test1.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/weighted_unifrac.test2.feature-table.qza |
| b |
| Binary file test-data/weighted_unifrac.test2.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/weighted_unifrac.test2.phylogeny.qza |
| b |
| Binary file test-data/weighted_unifrac.test2.phylogeny.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/weighted_unifrac.test3.feature-table.qza |
| b |
| Binary file test-data/weighted_unifrac.test3.feature-table.qza has changed |
| b |
| diff -r f08636f56fd7 -r 1142e83c6ae3 test-data/weighted_unifrac.test3.phylogeny.qza |
| b |
| Binary file test-data/weighted_unifrac.test3.phylogeny.qza has changed |