| Previous changeset 4:a0d092f27fdf (2018-01-23) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bioperl commit 8d8cd9b0700db2a07dc8b9e692d1c4b671485bd1" |
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modified:
bp_genbank2gff3.xml macros.xml test-data/seq.gb.0.gff test-data/seq.gb.1.gff |
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| diff -r a0d092f27fdf -r 11c3eb512633 bp_genbank2gff3.xml --- a/bp_genbank2gff3.xml Tue Jan 23 05:03:11 2018 -0500 +++ b/bp_genbank2gff3.xml Fri May 22 03:56:00 2020 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="bp_genbank2gff3" name="Genbank to GFF3" version="1.0"> +<tool id="bp_genbank2gff3" name="Genbank to GFF3" version="1.1"> <description>converter</description> <macros> <import>macros.xml</import> |
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| diff -r a0d092f27fdf -r 11c3eb512633 macros.xml --- a/macros.xml Tue Jan 23 05:03:11 2018 -0500 +++ b/macros.xml Fri May 22 03:56:00 2020 -0400 |
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| @@ -1,7 +1,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="1.6.924">perl-bioperl</requirement> + <requirement type="package" version="1.7.2">perl-bioperl</requirement> <yield/> </requirements> </xml> |
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| diff -r a0d092f27fdf -r 11c3eb512633 test-data/seq.gb.0.gff --- a/test-data/seq.gb.0.gff Tue Jan 23 05:03:11 2018 -0500 +++ b/test-data/seq.gb.0.gff Fri May 22 03:56:00 2020 -0400 |
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| @@ -6,7 +6,7 @@ # Note Enterobacteria phage CC31, complete genome. # date 12-NOV-2010 # working on contig:NC_014662, Enterobacteria phage CC31, Enterobacteria phage CC31, complete genome., 12-NOV-2010 -NC_014662 GenBank contig 1 165540 . + 1 ID=NC_014662;Dbxref=BioProject:PRJNA60119,taxon:709484;Name=NC_014662;Note=Enterobacteria phage CC31%2C complete genome.,PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to GU323318. COMPLETENESS: full length. ;comment1=PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to GU323318. COMPLETENESS: full length. ;date=12-NOV-2010;host=Escherichia coli;mol_type=genomic DNA;organism=Enterobacteria phage CC31 +NC_014662 GenBank contig 1 165540 . + 1 ID=NC_014662;Dbxref=BioProject:PRJNA60119,taxon:709484;Name=NC_014662;Note=Enterobacteria phage CC31%2C complete genome.,PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to GU323318. COMPLETENESS: full length. ;comment1=PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to GU323318. COMPLETENESS: full length. ;date=12-NOV-2010;host=Escherichia coli;mol_type=genomic DNA;organism=Enterobacteria phage CC31 NC_014662 GenBank gene 1 2214 . - 1 ID=CC31p001;Dbxref=GeneID:9926434;Name=rIIA;locus_tag=CC31p001 NC_014662 GenBank mRNA 1 2214 . - 1 ID=CC31p001.t01;Parent=CC31p001 NC_014662 GenBank CDS 1 2214 . - 1 ID=CC31p001.p01;Parent=CC31p001.t01;Dbxref=GI:311992993,GeneID:9926434;Name=rIIA;codon_start=1;locus_tag=CC31p001;product=membrane-associated affects host membrane ATPase;protein_id=YP_004009859.1;transl_table=11;translation=length.737 |
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| diff -r a0d092f27fdf -r 11c3eb512633 test-data/seq.gb.1.gff --- a/test-data/seq.gb.1.gff Tue Jan 23 05:03:11 2018 -0500 +++ b/test-data/seq.gb.1.gff Fri May 22 03:56:00 2020 -0400 |
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| @@ -6,7 +6,7 @@ # Note Enterobacteria phage CC31, complete genome. # date 12-NOV-2010 # working on contig:NC_014662, Enterobacteria phage CC31, Enterobacteria phage CC31, complete genome., 12-NOV-2010 -NC_014662 GenBank contig 1 165540 . + 1 ID=NC_014662;Dbxref=BioProject:PRJNA60119,taxon:709484;Name=NC_014662;Note=Enterobacteria phage CC31%2C complete genome.,PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to GU323318. COMPLETENESS: full length. ;comment1=PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to GU323318. COMPLETENESS: full length. ;date=12-NOV-2010;host=Escherichia coli;mol_type=genomic DNA;organism=Enterobacteria phage CC31 +NC_014662 GenBank contig 1 165540 . + 1 ID=NC_014662;Dbxref=BioProject:PRJNA60119,taxon:709484;Name=NC_014662;Note=Enterobacteria phage CC31%2C complete genome.,PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to GU323318. COMPLETENESS: full length. ;comment1=PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to GU323318. COMPLETENESS: full length. ;date=12-NOV-2010;host=Escherichia coli;mol_type=genomic DNA;organism=Enterobacteria phage CC31 NC_014662 GenBank gene 1 2214 . - 1 ID=CC31p001;Dbxref=GeneID:9926434;Name=rIIA;locus_tag=CC31p001 NC_014662 GenBank mRNA 1 2214 . - 1 ID=CC31p001.t01;Parent=CC31p001 NC_014662 GenBank CDS 1 2214 . - 1 ID=CC31p001.p01;Parent=CC31p001.t01;Dbxref=GI:311992993,GeneID:9926434;Name=rIIA;codon_start=1;locus_tag=CC31p001;product=membrane-associated affects host membrane ATPase;protein_id=YP_004009859.1;transl_table=11;translation=length.737 |