| Next changeset 1:728e3b913fbe (2024-09-22) |
|
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc_tools/ucsc_netfilter commit 4babe88f84d0853e3a074fac19b62b457a59251b |
|
added:
netfilter.xml test-data/in.ucsc.net test-data/out.ucsc.net |
| b |
| diff -r 000000000000 -r 128ec4c44111 netfilter.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/netfilter.xml Thu Sep 19 06:23:49 2024 +0000 |
| [ |
| @@ -0,0 +1,82 @@ +<tool id="ucsc_netfilter" name="netFilter" version="@TOOL_VERSION@+galaxy0" profile="21.05" license="MIT"> + <description> + Filter out parts of net + </description> + <macros> + <token name="@TOOL_VERSION@">469</token> + </macros> + <xrefs> + <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref> + </xrefs> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">ucsc-netfilter</requirement> + </requirements> + <version_command><![CDATA[ echo "@TOOL_VERSION@" ]]></version_command> + <command detect_errors="exit_code"><![CDATA[ + netFilter + '$in_net' + #if str($synteny.syn_filter) == "filtersyn" + $synteny.syntype + #if str($synteny.minSynScore) + -minSynScore=$synteny.minSynScore + #end if + #if str($synteny.minSynSize) + -minSynSize=$synteny.minSynSize + #end if + #if str($synteny.minSynAli) + -minSynAli=$synteny.minSynAli + #end if + #end if + #if str($minGap) + -minGap=$minGap + #end if + > '$out' + ]]></command> + <inputs> + <param name="in_net" format="ucsc.net" type="data" label="net dataset" help="" /> + + <conditional name="synteny"> + <param name="syn_filter" type="select" label="Filter on synteny?"> + <option value="skipsyn" selected="true">no</option> + <option value="filtersyn">yes</option> + </param> + <when value="skipsyn" /> + <when value="filtersyn"> + <param name="syntype" type="select" display="radio" label="Select synteny filter"> + <option value="-syn" selected="true">filter on synteny tuned for human/mouse (-syn)</option> + <option value="-chimpSyn">filter on synteny tuned for human/chimp (-chimpSyn)</option> + <option value="-nonsyn">do inverse filtering based on synteny tuned for human/mouse (-nonsyn)</option> + </param> + <param argument="-minSynScore" type="integer" optional="true" label="Min syntenic block score" help="default 200,000: covers 27,000 bases including 9,000 aligning--a very stringent requirement." /> + <param argument="-minSynSize" type="integer" min="0" optional="true" label="Min syntenic block size" help="default 20,000" /> + <param argument="-minSynAli" type="integer" min="0" optional="true" label="Min syntenic alignment size" help="default 10,000" /> + </when> + </conditional> + + <param argument="-minGap" type="integer" min="0" optional="true" label="Minimum gap" help="Restrict to those with gap size (tSize) >= minSize" /> + </inputs> + <outputs> + <data name="out" format="ucsc.net" /> + </outputs> + <tests> + <test expect_num_outputs="1"> + <param name="in_net" value="in.ucsc.net" /> + <conditional name="synteny"> + <param name="syn_filter" value="filtersyn" /> + <param name="syntype" value="-chimpSyn" /> + </conditional> + <param name="minGap" value="300" /> + <output name="out" file="out.ucsc.net" /> + </test> + </tests> + <help><![CDATA[ +**What it does** + +`netFilter`_ is a tool to filter out parts of net. What passes filter goes to output. Note a net is a recursive data structure. If a parent fails to pass the filter, the children are not even considered. + +.. _netFilter: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt + ]]> </help> + <citations> + <citation type="doi">10.1093/bib/bbs038</citation> + </citations> +</tool> |
| b |
| diff -r 000000000000 -r 128ec4c44111 test-data/in.ucsc.net --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/in.ucsc.net Thu Sep 19 06:23:49 2024 +0000 |
| b |
| b'@@ -0,0 +1,2000 @@\n+##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91\n+##gapPenalties=axtChain O=400 E=30\n+net hg38.chr1 248956422\n+ fill 12176 56 mm10.chr17 + 66149262 56 id 4536868 score 3633 ali 56 qDup 56 type top\n+ fill 12599 145 mm10.chr17 + 66149954 145 id 1388559 score 7047 ali 145 qDup 143 type top\n+ fill 12985 77 mm10.chr17 + 66150342 77 id 4098881 score 3856 ali 77 qDup 77 type top\n+ fill 13195 189 mm10.chr17 + 66150548 189 id 743873 score 9617 ali 189 qDup 189 type top\n+ fill 14083 28 mm10.chr6 - 121524450 28 id 9297212 score 2076 ali 28 qDup 28 type top\n+ fill 14114 87 mm10.chr6 - 121524363 87 id 1466860 score 6846 ali 87 qDup 87 type top\n+ fill 14692 110 mm10.chr17 - 66119029 110 id 1558953 score 6627 ali 110 qDup 110 type top\n+ fill 14802 42 mm10.chr17 - 66118981 42 id 6836484 score 2688 ali 42 qDup 42 type top\n+ fill 14942 103 mm10.chr17 - 66118803 103 id 1733214 score 6257 ali 103 qDup 103 type top\n+ fill 15278 60 mm10.chr17 - 66118574 60 id 7092226 score 2610 ali 60 qDup 60 type top\n+ fill 15786 119 mm10.chr17 - 66118111 119 id 715221 score 9795 ali 119 qDup 119 type top\n+ fill 15905 58 mm10.chr17 - 66118052 58 id 4622587 score 3591 ali 58 qDup 50 type top\n+ fill 16313 120 mm10.chr6 - 121522069 120 id 6109710 score 2938 ali 120 qDup 120 type top\n+ fill 16600 70 mm10.chr17 - 66117379 70 id 7780040 score 2419 ali 70 qDup 70 type top\n+ fill 16839 232 mm10.chr17 - 66116956 232 id 262499 score 14962 ali 232 qDup 232 type top\n+ fill 17227 65 mm10.chr17 - 66116701 65 id 2500115 score 5105 ali 65 qDup 65 type top\n+ fill 17295 86 mm10.chr17 - 66116615 86 id 2158338 score 5545 ali 86 qDup 86 type top\n+ fill 17588 159 mm10.chr17 - 66116254 159 id 430719 score 12277 ali 159 qDup 152 type top\n+ fill 17869 208 mm10.chr17 - 66115937 208 id 399980 score 12668 ali 208 qDup 207 type top\n+ fill 18257 138 mm10.chr17 - 66115654 138 id 782228 score 9391 ali 138 qDup 138 type top\n+ fill 18492 87 mm10.chr6 - 121520177 87 id 4403473 score 3699 ali 87 qDup 87 type top\n+ fill 19691 67 mm10.chr6 - 121518961 67 id 9574638 score 2023 ali 67 qDup 67 type top\n+ fill 20241 49 mm10.chr6 - 121518517 49 id 9531539 score 2031 ali 49 qDup 49 type top\n+ fill 20702 42 mm10.chr6 - 121518072 42 id 9364967 score 2063 ali 42 qDup 0 type top\n+ fill 22942 60 mm10.chr6 - 121513804 60 id 5430118 score 3215 ali 60 qDup 0 type top\n+ fill 23102 116 mm10.chr6 - 121513589 116 id 4379466 score 3711 ali 116 qDup 0 type top\n+ fill 24309 61 mm10.chr6 - 121511284 61 id 7485619 score 2497 ali 61 qDup 61 type top\n+ fill 24722 199 mm10.chr17 - 66113832 199 id 410495 score 12532 ali 199 qDup 199 type top\n+ fill 25035 69 mm10.chr6 - 121510582 69 id 5884146 score 3025 ali 69 qDup 69 type top\n+ fill 25424 49 mm10.chr6 - 121510311 49 id 7094738 score 2609 ali 49 qDup 49 type top\n+ fill 25496 62 mm10.chr6 - 121510227 62 id 4102752 score 3854 ali 62 qDup 62 type top\n+ fill 25558 215 mm10.chr6 - 121510011 215 id 152374 score 18229 ali 215 qDup 215 type top\n+ fill 25862 32 mm10.chr6 - 121509891 32 id 9308895 score 2074 ali 32 qDup 32 type top\n+ fill 26455 118 mm10.chr6 - 121509147 118 id 7674828 score 2447 ali 118 qDup 118 type top\n+ fill 36076 89 mm10.chr6 - 121499364 89 id 2993252 score 4610 ali 89 qDup 89 type top\n+ fill 36255 107 mm10.chr6 - 121499158 107 id 2424402 score 5194 ali 107 qDup 107 type top\n+ fill 36365 59 mm10.chr6 - 121499099 59 id 6195556 score 2906 ali 59 qDup 59 type top\n+ fill 36424 71 mm10.chr6 - 121499027 71 id 6004123 score 2978 ali 71 qDup 71 type top\n+ fill 37018 109 mm10.chr6 - 121498490 109 id 2971086 score 4630 ali 109 qDup 107 type top\n+ fill 37130 100 mm10.chr6 - 121498390 100 id 3411747 score 4279 ali 100 qDup 0 type top\n+ fill 37285 40 mm10.chr6 - 121498302 40 id 8038131 score 2354 ali 40 qDup 0 type top\n+ fill 37333 29 mm10.chr6 - 121498273 29 id 8488650 score 2247 ali 29 qDup 0 type top\n+ fill 37431 73 mm10.chr6 - 121498134 73 id 7397010 score 2522 ali 73 qDup 0 type top\n+ fill 52447 174 mm10.chr2 + 1'..b'type top\n+ fill 2022544 25 mm10.chr4 - 155394677 25 id 9320700 score 2072 ali 25 qDup 0 type top\n+ fill 2022569 35 mm10.chr4 - 155394641 35 id 7261666 score 2560 ali 35 qDup 0 type top\n+ fill 2022632 47 mm10.chr4 - 155394566 47 id 7514240 score 2490 ali 47 qDup 0 type top\n+ fill 2024925 154 mm10.chr4 - 155388908 154 id 841686 score 9070 ali 154 qDup 0 type top\n+ fill 2025327 84 mm10.chr4 - 155388555 84 id 1597842 score 6540 ali 84 qDup 0 type top\n+ fill 2025506 241 mm10.chr4 - 155388245 241 id 153436 score 18185 ali 241 qDup 0 type top\n+ fill 2027572 96 mm10.chr4 - 155387848 96 id 1365436 score 7110 ali 96 qDup 0 type top\n+ fill 2027724 44 mm10.chr4 - 155387711 44 id 8133801 score 2330 ali 44 qDup 0 type top\n+ fill 2028147 153 mm10.chr4 - 155387145 153 id 532238 score 11198 ali 153 qDup 0 type top\n+ fill 2029098 175 mm10.chr4 - 155386395 175 id 354524 score 13309 ali 175 qDup 0 type top\n+ fill 2029532 259 mm10.chr4 - 155385905 259 id 157504 score 18017 ali 259 qDup 0 type top\n+ fill 2029977 140 mm10.chr4 - 155385556 140 id 729529 score 9706 ali 140 qDup 0 type top\n+ fill 2030126 161 mm10.chr4 - 155385395 161 id 622637 score 10443 ali 161 qDup 0 type top\n+ fill 2030592 51 mm10.chr4 - 155385080 51 id 5727409 score 3088 ali 51 qDup 0 type top\n+ fill 2030680 55 mm10.chr4 - 155384982 55 id 4563175 score 3620 ali 55 qDup 0 type top\n+ fill 2031198 42 mm10.chr4 - 155384376 42 id 9507829 score 2035 ali 42 qDup 0 type top\n+ fill 2031258 59 mm10.chr4 - 155384289 59 id 7992359 score 2365 ali 59 qDup 0 type top\n+ fill 2032300 34 mm10.chr4 - 155383495 34 id 6453557 score 2814 ali 34 qDup 0 type top\n+ fill 2032781 62 mm10.chr4 - 155383004 62 id 5279716 score 3283 ali 62 qDup 0 type top\n+ fill 2032844 58 mm10.chr4 - 155382946 58 id 3005326 score 4600 ali 58 qDup 0 type top\n+ fill 2032902 72 mm10.chr4 - 155382873 72 id 2400685 score 5223 ali 72 qDup 0 type top\n+ fill 2033047 57 mm10.chr4 - 155382736 57 id 4713927 score 3547 ali 57 qDup 0 type top\n+ fill 2033649 31 mm10.chr4 - 155382355 31 id 9496954 score 2037 ali 31 qDup 0 type top\n+ fill 2033959 40 mm10.chr4 - 155382064 40 id 9217814 score 2092 ali 40 qDup 0 type top\n+ fill 2046077 69 mm10.chr4 - 155367410 69 id 3291319 score 4367 ali 69 qDup 0 type top\n+ fill 2047019 40 mm10.chr4 - 155366463 40 id 7584752 score 2471 ali 40 qDup 0 type top\n+ fill 2050151 59 mm10.chr4 - 155361592 59 id 5186117 score 3325 ali 59 qDup 0 type top\n+ fill 2050290 58 mm10.chr4 - 155361477 58 id 3061589 score 4552 ali 58 qDup 0 type top\n+ fill 2050474 51 mm10.chr4 - 155361360 51 id 5415461 score 3222 ali 51 qDup 0 type top\n+ fill 2050576 132 mm10.chr4 - 155361144 132 id 700233 score 9893 ali 132 qDup 0 type top\n+ fill 2051020 46 mm10.chr4 - 155360832 46 id 8014594 score 2359 ali 46 qDup 0 type top\n+ fill 2052319 45 mm10.chr4 - 155359608 45 id 9197986 score 2096 ali 45 qDup 0 type top\n+ fill 2055408 177 mm10.chr4 - 155357457 177 id 476577 score 11758 ali 177 qDup 0 type top\n+ fill 2056469 112 mm10.chr4 - 155356418 112 id 1123971 score 7860 ali 112 qDup 0 type top\n+ fill 2059534 66 mm10.chr4 - 155354644 66 id 2938519 score 4659 ali 66 qDup 0 type top\n+ fill 2071478 44 mm10.chr4 - 155347322 44 id 7519339 score 2488 ali 44 qDup 0 type top\n+ fill 2071523 120 mm10.chr4 - 155347202 120 id 1462560 score 6857 ali 120 qDup 0 type top\n+ fill 2071643 49 mm10.chr4 - 155347151 49 id 4958807 score 3431 ali 49 qDup 0 type top\n+ fill 2073578 43 mm10.chr4 - 155345786 43 id 9092217 score 2117 ali 43 qDup 0 type top\n+ fill 2073627 91 mm10.chr4 - 155345695 91 id 1365921 score 7108 ali 91 qDup 0 type top\n+ fill 2073718 77 mm10.chr4 - 155345615 77 id 2855976 score 4735 ali 77 qDup 0 type top\n+ fill 2073841 58 mm10.chr4 - 155345479 58 id 4794481 score 3508 ali 58 qDup 0 type top\n+ fill 2073920 42 mm10.chr4 - 155345416 42 id 9567705 score 2024 ali 42 qDup 0 type top\n+ fill 2074043 42 mm10.chr4 - 155345304 42 id 7810750 score 2411 ali 42 qDup 0 type top\n+ fill 2074106 52 mm10.chr4 - 155345245 52 id 8038209 score 2354 ali 52 qDup 0 type top\n' |
| b |
| diff -r 000000000000 -r 128ec4c44111 test-data/out.ucsc.net --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/out.ucsc.net Thu Sep 19 06:23:49 2024 +0000 |
| b |
| b'@@ -0,0 +1,1490 @@\n+net hg38.chr1 248956422\n+ fill 12176 56 mm10.chr17 + 66149262 56 id 4536868 score 3633 ali 56 qDup 56 type top\n+ fill 12599 145 mm10.chr17 + 66149954 145 id 1388559 score 7047 ali 145 qDup 143 type top\n+ fill 12985 77 mm10.chr17 + 66150342 77 id 4098881 score 3856 ali 77 qDup 77 type top\n+ fill 13195 189 mm10.chr17 + 66150548 189 id 743873 score 9617 ali 189 qDup 189 type top\n+ fill 14114 87 mm10.chr6 - 121524363 87 id 1466860 score 6846 ali 87 qDup 87 type top\n+ fill 14692 110 mm10.chr17 - 66119029 110 id 1558953 score 6627 ali 110 qDup 110 type top\n+ fill 14942 103 mm10.chr17 - 66118803 103 id 1733214 score 6257 ali 103 qDup 103 type top\n+ fill 15278 60 mm10.chr17 - 66118574 60 id 7092226 score 2610 ali 60 qDup 60 type top\n+ fill 15786 119 mm10.chr17 - 66118111 119 id 715221 score 9795 ali 119 qDup 119 type top\n+ fill 15905 58 mm10.chr17 - 66118052 58 id 4622587 score 3591 ali 58 qDup 50 type top\n+ fill 16313 120 mm10.chr6 - 121522069 120 id 6109710 score 2938 ali 120 qDup 120 type top\n+ fill 16600 70 mm10.chr17 - 66117379 70 id 7780040 score 2419 ali 70 qDup 70 type top\n+ fill 16839 232 mm10.chr17 - 66116956 232 id 262499 score 14962 ali 232 qDup 232 type top\n+ fill 17227 65 mm10.chr17 - 66116701 65 id 2500115 score 5105 ali 65 qDup 65 type top\n+ fill 17295 86 mm10.chr17 - 66116615 86 id 2158338 score 5545 ali 86 qDup 86 type top\n+ fill 17588 159 mm10.chr17 - 66116254 159 id 430719 score 12277 ali 159 qDup 152 type top\n+ fill 17869 208 mm10.chr17 - 66115937 208 id 399980 score 12668 ali 208 qDup 207 type top\n+ fill 18257 138 mm10.chr17 - 66115654 138 id 782228 score 9391 ali 138 qDup 138 type top\n+ fill 18492 87 mm10.chr6 - 121520177 87 id 4403473 score 3699 ali 87 qDup 87 type top\n+ fill 19691 67 mm10.chr6 - 121518961 67 id 9574638 score 2023 ali 67 qDup 67 type top\n+ fill 22942 60 mm10.chr6 - 121513804 60 id 5430118 score 3215 ali 60 qDup 0 type top\n+ fill 23102 116 mm10.chr6 - 121513589 116 id 4379466 score 3711 ali 116 qDup 0 type top\n+ fill 24309 61 mm10.chr6 - 121511284 61 id 7485619 score 2497 ali 61 qDup 61 type top\n+ fill 24722 199 mm10.chr17 - 66113832 199 id 410495 score 12532 ali 199 qDup 199 type top\n+ fill 25035 69 mm10.chr6 - 121510582 69 id 5884146 score 3025 ali 69 qDup 69 type top\n+ fill 25496 62 mm10.chr6 - 121510227 62 id 4102752 score 3854 ali 62 qDup 62 type top\n+ fill 25558 215 mm10.chr6 - 121510011 215 id 152374 score 18229 ali 215 qDup 215 type top\n+ fill 26455 118 mm10.chr6 - 121509147 118 id 7674828 score 2447 ali 118 qDup 118 type top\n+ fill 36076 89 mm10.chr6 - 121499364 89 id 2993252 score 4610 ali 89 qDup 89 type top\n+ fill 36255 107 mm10.chr6 - 121499158 107 id 2424402 score 5194 ali 107 qDup 107 type top\n+ fill 36365 59 mm10.chr6 - 121499099 59 id 6195556 score 2906 ali 59 qDup 59 type top\n+ fill 36424 71 mm10.chr6 - 121499027 71 id 6004123 score 2978 ali 71 qDup 71 type top\n+ fill 37018 109 mm10.chr6 - 121498490 109 id 2971086 score 4630 ali 109 qDup 107 type top\n+ fill 37130 100 mm10.chr6 - 121498390 100 id 3411747 score 4279 ali 100 qDup 0 type top\n+ fill 37431 73 mm10.chr6 - 121498134 73 id 7397010 score 2522 ali 73 qDup 0 type top\n+ fill 52447 174 mm10.chr2 + 111306202 174 id 1180788 score 7665 ali 174 qDup 0 type top\n+ fill 52681 80 mm10.chr2 + 111479033 80 id 4301303 score 3751 ali 80 qDup 80 type top\n+ fill 52810 52 mm10.chr2 - 112072154 52 id 4345725 score 3401 ali 52 qDup 0 type top\n+ fill 52862 287 mm10.chr2 + 111479211 287 id 383086 score 12898 ali 287 qDup 287 type top\n+ fill 53220 56 mm10.chr2 + 111379786 56 id 1702469 score 2786 ali 56 qDup 0 type top\n+ fill 53282 84 mm10.chr2 - 111983133 84 id 5333729 score 3258 ali 84 qDup 0 type top\n+ fill 56703 52 mm10.chr2 + 111473327 52 id 8013976 score 2359 ali 52 qDup 0 type top\n+ fill 57442 131 mm10.chr2 + 111473970 131 id 1410422 score 6989 ali 131 qDup 0 type top\n+ fill 57926 87 mm10.chr2 + 111474442 87 id 4893855 score 3461 ali 87 qDup 0 type top\n+ fill 58318 88 mm10.chr2 + 111474828 88 id 4824043 score 3494 al'..b'ill 1990669 50 mm10.chr4 - 155415910 50 id 7082721 score 2613 ali 50 qDup 0 type top\n+ fill 1990853 139 mm10.chr4 - 155415662 139 id 2526861 score 5074 ali 139 qDup 0 type top\n+ fill 2014658 54 mm10.chr4 - 155401843 54 id 6371216 score 2843 ali 54 qDup 0 type top\n+ fill 2014881 110 mm10.chr4 - 155401587 110 id 1805919 score 6119 ali 110 qDup 0 type top\n+ fill 2015071 54 mm10.chr4 - 155401447 54 id 4132581 score 3838 ali 54 qDup 0 type top\n+ fill 2015367 96 mm10.chr4 - 155401129 96 id 5008371 score 3408 ali 96 qDup 0 type top\n+ fill 2019419 80 mm10.chr4 - 155397886 80 id 2670596 score 4919 ali 80 qDup 0 type top\n+ fill 2020571 76 mm10.chr4 - 155396734 76 id 6028549 score 2968 ali 76 qDup 0 type top\n+ fill 2020779 81 mm10.chr4 - 155396539 81 id 4456451 score 3673 ali 81 qDup 0 type top\n+ fill 2020975 73 mm10.chr4 - 155396314 73 id 4608839 score 3598 ali 73 qDup 0 type top\n+ fill 2021152 50 mm10.chr4 - 155396199 50 id 7900217 score 2388 ali 50 qDup 0 type top\n+ fill 2021326 61 mm10.chr4 - 155395985 61 id 5727356 score 3088 ali 61 qDup 0 type top\n+ fill 2021592 105 mm10.chr4 - 155395742 105 id 1794668 score 6140 ali 105 qDup 0 type top\n+ fill 2021726 56 mm10.chr4 - 155395686 56 id 5065228 score 3381 ali 56 qDup 0 type top\n+ fill 2022055 132 mm10.chr4 - 155395284 132 id 2454075 score 5159 ali 132 qDup 0 type top\n+ fill 2022325 89 mm10.chr4 - 155394869 89 id 9163886 score 2103 ali 89 qDup 0 type top\n+ fill 2024925 154 mm10.chr4 - 155388908 154 id 841686 score 9070 ali 154 qDup 0 type top\n+ fill 2025327 84 mm10.chr4 - 155388555 84 id 1597842 score 6540 ali 84 qDup 0 type top\n+ fill 2025506 241 mm10.chr4 - 155388245 241 id 153436 score 18185 ali 241 qDup 0 type top\n+ fill 2027572 96 mm10.chr4 - 155387848 96 id 1365436 score 7110 ali 96 qDup 0 type top\n+ fill 2028147 153 mm10.chr4 - 155387145 153 id 532238 score 11198 ali 153 qDup 0 type top\n+ fill 2029098 175 mm10.chr4 - 155386395 175 id 354524 score 13309 ali 175 qDup 0 type top\n+ fill 2029532 259 mm10.chr4 - 155385905 259 id 157504 score 18017 ali 259 qDup 0 type top\n+ fill 2029977 140 mm10.chr4 - 155385556 140 id 729529 score 9706 ali 140 qDup 0 type top\n+ fill 2030126 161 mm10.chr4 - 155385395 161 id 622637 score 10443 ali 161 qDup 0 type top\n+ fill 2030592 51 mm10.chr4 - 155385080 51 id 5727409 score 3088 ali 51 qDup 0 type top\n+ fill 2030680 55 mm10.chr4 - 155384982 55 id 4563175 score 3620 ali 55 qDup 0 type top\n+ fill 2031258 59 mm10.chr4 - 155384289 59 id 7992359 score 2365 ali 59 qDup 0 type top\n+ fill 2032781 62 mm10.chr4 - 155383004 62 id 5279716 score 3283 ali 62 qDup 0 type top\n+ fill 2032844 58 mm10.chr4 - 155382946 58 id 3005326 score 4600 ali 58 qDup 0 type top\n+ fill 2032902 72 mm10.chr4 - 155382873 72 id 2400685 score 5223 ali 72 qDup 0 type top\n+ fill 2033047 57 mm10.chr4 - 155382736 57 id 4713927 score 3547 ali 57 qDup 0 type top\n+ fill 2046077 69 mm10.chr4 - 155367410 69 id 3291319 score 4367 ali 69 qDup 0 type top\n+ fill 2050151 59 mm10.chr4 - 155361592 59 id 5186117 score 3325 ali 59 qDup 0 type top\n+ fill 2050290 58 mm10.chr4 - 155361477 58 id 3061589 score 4552 ali 58 qDup 0 type top\n+ fill 2050474 51 mm10.chr4 - 155361360 51 id 5415461 score 3222 ali 51 qDup 0 type top\n+ fill 2050576 132 mm10.chr4 - 155361144 132 id 700233 score 9893 ali 132 qDup 0 type top\n+ fill 2055408 177 mm10.chr4 - 155357457 177 id 476577 score 11758 ali 177 qDup 0 type top\n+ fill 2056469 112 mm10.chr4 - 155356418 112 id 1123971 score 7860 ali 112 qDup 0 type top\n+ fill 2059534 66 mm10.chr4 - 155354644 66 id 2938519 score 4659 ali 66 qDup 0 type top\n+ fill 2071523 120 mm10.chr4 - 155347202 120 id 1462560 score 6857 ali 120 qDup 0 type top\n+ fill 2073627 91 mm10.chr4 - 155345695 91 id 1365921 score 7108 ali 91 qDup 0 type top\n+ fill 2073718 77 mm10.chr4 - 155345615 77 id 2855976 score 4735 ali 77 qDup 0 type top\n+ fill 2073841 58 mm10.chr4 - 155345479 58 id 4794481 score 3508 ali 58 qDup 0 type top\n+ fill 2074106 52 mm10.chr4 - 155345245 52 id 8038209 score 2354 ali 52 qDup 0 type top\n' |