| Previous changeset 0:048593e41359 (2017-03-12) Next changeset 2:6112a571f012 (2017-06-23) |
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Commit message:
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_humann2_database_downloader commit b46aa969c01b7e5f4f133192899fa4da286ecf89-dirty |
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modified:
data_manager/data_manager_humann2_download.xml |
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| diff -r 048593e41359 -r 1316375a8cbb data_manager/data_manager_humann2_download.xml --- a/data_manager/data_manager_humann2_download.xml Sun Mar 12 14:33:34 2017 -0400 +++ b/data_manager/data_manager_humann2_download.xml Mon Mar 13 12:34:20 2017 -0400 |
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| @@ -7,10 +7,10 @@ <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> <exit_code range="1:" level="fatal" description="Error" /> </stdio> - <command interpreter="python"> - data_manager_humann2_download.py + <command> + python '$__tool_directory__/data_manager_humann2_download.py' --database '$db.database' - --build '$db.build' + --build $db.build '${out_file}' </command> <inputs> @@ -38,19 +38,16 @@ </conditional> </inputs> <outputs> - <data name="out_file" format="data_manager_json" label="${tool.name}"/> + <data name="out_file" format="data_manager_json" label="${tool.name}" /> </outputs> <tests> </tests> <help> - This tool downloads the HUMAnN2 databases. -`Read more about the tool <http://huttenhower.sph.harvard.edu/humann2/manual>`_. - +Read more about the tool at http://huttenhower.sph.harvard.edu/humann2/manual . </help> <citations> <citation type="doi">10.1371/journal.pcbi.1003153</citation> - <yield /> </citations> </tool> |