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Changeset 9:1334cb4c6b68 (2019-11-30)

Previous changeset 8:c9f8fef1df74 (2018-04-13) Next changeset 10:e9005d1f3cfd (2020-12-18)

Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/taxonomy_krona_chart commit 0be1842634941540d5e313b1ad9cb5eb81fd7305"

modified:
taxonomy_krona_chart.xml
test-data/krona_test1.html

diff -r c9f8fef1df74 -r 1334cb4c6b68 taxonomy_krona_chart.xml
--- a/taxonomy_krona_chart.xml Fri Apr 13 15:32:04 2018 -0400
+++ b/taxonomy_krona_chart.xml Sat Nov 30 13:05:03 2019 -0500

[

@@ -1,7 +1,7 @@
-<tool id="taxonomy_krona_chart" name="Krona pie chart" version="2.6.1.1">
+<tool id="taxonomy_krona_chart" name="Krona pie chart" version="2.7.1">
   <description>from taxonomic profile</description>
   <requirements>
-    <requirement type="package" version="2.6.1">krona</requirement>
+    <requirement type="package" version="2.7.1">krona</requirement>
   </requirements>
   <version_command>ktImportText | sed -n 's/.*\(KronaTools [[:digit:].]\{1,\}\).*/\1/p'</version_command>
   <command detect_errors="exit_code"><![CDATA[

diff -r c9f8fef1df74 -r 1334cb4c6b68 test-data/krona_test1.html
--- a/test-data/krona_test1.html Fri Apr 13 15:32:04 2018 -0400
+++ b/test-data/krona_test1.html Sat Nov 30 13:05:03 2019 -0500

b'@@ -3,7 +3,7 @@\n <head>\n <meta charset="utf-8"/>\n <link rel="shortcut icon" href="data:image/x-icon;base64,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'..b'val><val>IA_1-48105</val><val>IA_1-48105</val><val>IA_1-57254</val><val>IA_1-61975</val><val>IA_1-61975</val><val>IA_1-66943</val><val>IA_1-68288</val><val>IA_1-82334</val><val>IA_1-95526</val></vals>\n- </members>\n+ <count><val>94</val></count>\n <rank><val>order</val></rank>\n- <count><val>94</val></count>\n+ <node name="Sciurognathi">\n+ <rank><val>suborder</val></rank>\n+ <count><val>94</val></count>\n+ <node name="Muridae">\n+ <rank><val>family</val></rank>\n+ <count><val>94</val></count>\n+ <node name="Murinae">\n+ <rank><val>subfamily</val></rank>\n+ <count><val>94</val></count>\n+ <node name="Rattus">\n+ <rank><val>genus</val></rank>\n+ <count><val>94</val></count>\n+ <members>\n+ <vals><val>IA_1-296315</val><val>IA_1-322295</val></vals>\n+ </members>\n+ <unassigned><val>2</val></unassigned>\n+ <node name="Rattus norvegicus">\n+ <members>\n+ <vals><val>IA_1-144417</val><val>IA_1-278966</val><val>IA_1-314709</val><val>IA_1-324951</val><val>IA_1-27817</val><val>IA_1-95255</val><val>IA_1-104173</val><val>IA_1-135979</val><val>IA_1-139090</val><val>IA_1-139090</val><val>IA_1-139090</val><val>IA_1-144996</val><val>IA_1-160446</val><val>IA_1-160446</val><val>IA_1-160446</val><val>IA_1-160446</val><val>IA_1-160446</val><val>IA_1-160446</val><val>IA_1-160446</val><val>IA_1-160446</val><val>IA_1-161439</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-190855</val><val>IA_1-205154</val><val>IA_1-205154</val><val>IA_1-205154</val><val>IA_1-205154</val><val>IA_1-205154</val><val>IA_1-205154</val><val>IA_1-205154</val><val>IA_1-205154</val><val>IA_1-205154</val><val>IA_1-205154</val><val>IA_1-216231</val><val>IA_1-236286</val><val>IA_1-236286</val><val>IA_1-236286</val><val>IA_1-236286</val><val>IA_1-236286</val><val>IA_1-236286</val><val>IA_1-236286</val><val>IA_1-236286</val><val>IA_1-236286</val><val>IA_1-236286</val><val>IA_1-236286</val><val>IA_1-236286</val><val>IA_1-237681</val><val>IA_1-250166</val><val>IA_1-254274</val><val>IA_1-254274</val><val>IA_1-27817</val><val>IA_1-29000</val><val>IA_1-291427</val><val>IA_1-291427</val><val>IA_1-293054</val><val>IA_1-293054</val><val>IA_1-296315</val><val>IA_1-310974</val><val>IA_1-310974</val><val>IA_1-311282</val><val>IA_1-311282</val><val>IA_1-42600</val><val>IA_1-45102</val><val>IA_1-45102</val><val>IA_1-48105</val><val>IA_1-48105</val><val>IA_1-57254</val><val>IA_1-61975</val><val>IA_1-61975</val><val>IA_1-66943</val><val>IA_1-68288</val><val>IA_1-82334</val><val>IA_1-95526</val></vals>\n+ </members>\n+ <rank><val>species</val></rank>\n+ <count><val>92</val></count>\n+ </node>\n+ </node>\n+ </node>\n+ </node>\n+ </node>\n </node>\n </node>\n </node>\n@@ -6644,14 +6687,14 @@\n <count><val>6</val></count>\n <rank><val>phylum</val></rank>\n <node name="Gammaproteobacteria">\n+ <rank><val>class</val></rank>\n <count><val>6</val></count>\n- <rank><val>class</val></rank>\n <node name="Enterobacteriales">\n+ <rank><val>order</val></rank>\n <count><val>6</val></count>\n- <rank><val>order</val></rank>\n <node name="Enterobacteriaceae">\n+ <rank><val>family</val></rank>\n <count><val>6</val></count>\n- <rank><val>family</val></rank>\n <node name="Shigella">\n <count><val>6</val></count>\n <rank><val>genus</val></rank>\n'