| Previous changeset 12:4c8507667cd6 (2017-07-20) Next changeset 14:833d2c821d9c (2018-09-18) |
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Commit message:
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 4897a06ef248e2e74e57a496dd68adbda3c828f1 |
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modified:
README.rst abims_xcms_group.xml macros.xml |
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| diff -r 4c8507667cd6 -r 13558e8a4778 README.rst --- a/README.rst Thu Jul 20 04:14:50 2017 -0400 +++ b/README.rst Wed Nov 29 09:46:03 2017 -0500 |
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| @@ -2,6 +2,10 @@ Changelog/News -------------- +**Version 2.1.1 - 29/11/2017** + +- BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C + **Version 2.1.0 - 07/02/2017** - IMPROVEMENT: Add an option to export the peak list at this step without have to wait camara.annotate |
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| diff -r 4c8507667cd6 -r 13558e8a4778 abims_xcms_group.xml --- a/abims_xcms_group.xml Thu Jul 20 04:14:50 2017 -0400 +++ b/abims_xcms_group.xml Wed Nov 29 09:46:03 2017 -0500 |
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| @@ -1,4 +1,4 @@ -<tool id="abims_xcms_group" name="xcms.group" version="2.1.0"> +<tool id="abims_xcms_group" name="xcms.group" version="2.1.1"> <description>Group peaks together across samples using overlapping m/z bins and calculation of smoothed peak distributions in chromatographic time.</description> @@ -17,7 +17,7 @@ xsetRdataOutput '$xsetRData' rplotspdf '$rplotsPdf' - method $methods.method + method $methods.method #if $methods.method == "density": ## minsamp $methods.minsamp minfrac $methods.minfrac @@ -414,6 +414,10 @@ Changelog/News -------------- +**Version 2.1.1 - 29/11/2017** + +- BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C + **Version 2.1.0 - 07/02/2017** - IMPROVEMENT: Add an option to export the peak list at this step without have to wait camara.annotate |
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| diff -r 4c8507667cd6 -r 13558e8a4778 macros.xml --- a/macros.xml Thu Jul 20 04:14:50 2017 -0400 +++ b/macros.xml Wed Nov 29 09:46:03 2017 -0500 |
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| @@ -19,7 +19,7 @@ </xml> <token name="@COMMAND_XCMS_SCRIPT@"> - LANG=C Rscript $__tool_directory__/xcms.r + LC_ALL=C Rscript $__tool_directory__/xcms.r </token> <token name="@COMMAND_LOG_EXIT@"> |