| Previous changeset 4:30a8343fb0e7 (2014-10-13) |
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Commit message:
Update for dataset files_path - use model from BB pull request 532 |
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modified:
rsem_calculate_expression.xml rsem_prepare_reference.xml |
| b |
| diff -r 30a8343fb0e7 -r 14267d364365 rsem_calculate_expression.xml --- a/rsem_calculate_expression.xml Mon Oct 13 15:32:39 2014 -0500 +++ b/rsem_calculate_expression.xml Thu Feb 04 06:50:26 2016 -0600 |
| b |
| @@ -94,7 +94,7 @@ #end if ## RSEM reference #if $reference.refSrc == 'history': - ${reference.rsem_ref.dataset.extra_files_path}/${reference.rsem_ref.metadata.reference_name} + ${reference.rsem_ref.extra_files_path}/${reference.rsem_ref.metadata.reference_name} #elif $reference.refSrc == 'cached': ${reference.index.fields.path} #end if |
| b |
| diff -r 30a8343fb0e7 -r 14267d364365 rsem_prepare_reference.xml --- a/rsem_prepare_reference.xml Mon Oct 13 15:32:39 2014 -0500 +++ b/rsem_prepare_reference.xml Thu Feb 04 06:50:26 2016 -0600 |
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| @@ -6,8 +6,8 @@ </requirements> <command> echo $reference_name " " | tee $reference_file && - mkdir $reference_file.dataset.extra_files_path && - cd $reference_file.dataset.extra_files_path && + mkdir $reference_file.files_path && + cd $reference_file.files_path && rsem-prepare-reference #if $polya.polya_use == 'add': #if $polya.polya_length: |