| Previous changeset 8:e132a07229c4 (2023-07-23) Next changeset 10:faff58a642fb (2023-07-27) |
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Commit message:
planemo upload commit 543b712032e171c27da08e1dfe44b173cdfbe0bd |
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modified:
cpt_convert_glimmer_to_gff3.py cpt_convert_glimmer_to_gff3.xml |
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| diff -r e132a07229c4 -r 14306e57683d cpt_convert_glimmer_to_gff3.py --- a/cpt_convert_glimmer_to_gff3.py Sun Jul 23 21:01:09 2023 +0000 +++ b/cpt_convert_glimmer_to_gff3.py Thu Jul 27 04:10:30 2023 +0000 |
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| @@ -1,9 +1,8 @@ #!/usr/bin/env python import sys import argparse -from CPT_GFFParser import gffParse, gffWrite, gffSeqFeature +from CPT_GFFParser import gffWrite, gffSeqFeature from Bio import SeqIO -from Bio.SeqFeature import SeqFeature from Bio.SeqFeature import FeatureLocation import logging |
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| diff -r e132a07229c4 -r 14306e57683d cpt_convert_glimmer_to_gff3.xml --- a/cpt_convert_glimmer_to_gff3.xml Sun Jul 23 21:01:09 2023 +0000 +++ b/cpt_convert_glimmer_to_gff3.xml Thu Jul 27 04:10:30 2023 +0000 |
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| @@ -4,10 +4,13 @@ <import>cpt-macros.xml</import> <import>macros.xml</import> </macros> - <expand macro="requirements"/> + <expand macro="requirements"> + <requirement type="package" version="3.9.16">python</requirement> + <requirement type="package" version="1.2.2">cpt_gffparser</requirement> + <requirement type="package" version="1.81">biopython</requirement> + </expand> <command detect_errors="aggressive"><![CDATA[ @GENOME_SELECTOR_PRE@ - 'python $__tool_directory__/cpt_convert_glimmer_to_gff3.py' '$glimmer' @GENOME_SELECTOR@ |