| Previous changeset 1:cd256484eb1a (2018-09-28) Next changeset 3:1ce9b1d72ec3 (2018-12-02) |
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Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/flye commit a926a92aed3e22b14fb88af204c8450987c59743 |
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modified:
flye.xml macros.xml test-data/result1_assembly_graph.dot test-data/result1_assembly_info.txt test-data/result1_contigs.fasta test-data/result1_scaffolds.fasta test-data/result2_assembly_graph.dot test-data/result2_assembly_info.txt test-data/result2_contigs.fasta test-data/result2_scaffolds.fasta test-data/result3_contigs.fasta test-data/result3_scaffolds.fasta |
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added:
test-data/nanopore.fasta |
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removed:
test-data/E.coli_PacBio_40x_first_1K_reads.fasta test-data/E.coli_PacBio_40x_first_200_reads.fasta test-data/Loman_E.coli_MAP006-1_2D_50x_first_500_reads.fasta |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 flye.xml --- a/flye.xml Fri Sep 28 19:18:54 2018 -0400 +++ b/flye.xml Thu Nov 29 04:34:34 2018 -0500 |
| [ |
| @@ -1,4 +1,4 @@ -<tool id="flye" name="Assembly" version="2.3.5"> +<tool id="flye" name="Assembly" version="2.3.7"> <description>of long and error-prone reads</description> <macros> <import>macros.xml</import> @@ -25,7 +25,7 @@ flye $mode #for $counter, $input in enumerate($inputs): - ./input_${counter}.${input.ext} + ./input_${counter}.$ext #end for -o out_dir @@ -61,30 +61,30 @@ </outputs> <tests> <test> - <param name="inputs" ftype="fasta" value="E.coli_PacBio_40x_first_200_reads.fasta"/> + <param name="inputs" ftype="fasta" value="nanopore.fasta"/> <param name="mode" value="--pacbio-raw"/> - <param name="g" value="1m"/> - <output name="contigs" file="result1_contigs.fasta" ftype="fasta"/> - <output name="scaffolds" file="result1_scaffolds.fasta" ftype="fasta"/> - <output name="assembly_info" file="result1_assembly_info.txt" ftype="tabular"/> + <param name="g" value="10000"/> + <output name="contigs" file="result1_contigs.fasta" ftype="fasta" compare="sim_size"/> + <output name="scaffolds" file="result1_scaffolds.fasta" ftype="fasta" compare="sim_size"/> + <output name="assembly_info" file="result1_assembly_info.txt" ftype="tabular" compare="sim_size"/> <output name="assembly_graph" file="result1_assembly_graph.dot" ftype="graph_dot" compare="sim_size"/> </test> <test> - <param name="inputs" ftype="fasta" value="Loman_E.coli_MAP006-1_2D_50x_first_500_reads.fasta"/> + <param name="inputs" ftype="fasta" value="nanopore.fasta"/> <param name="mode" value="--nano-raw"/> - <param name="g" value="100000"/> - <output name="contigs" file="result2_contigs.fasta" ftype="fasta"/> - <output name="scaffolds" file="result2_scaffolds.fasta" ftype="fasta"/> - <output name="assembly_info" file="result2_assembly_info.txt" ftype="tabular"/> + <param name="g" value="10000"/> + <output name="contigs" file="result2_contigs.fasta" ftype="fasta" compare="sim_size"/> + <output name="scaffolds" file="result2_scaffolds.fasta" ftype="fasta" compare="sim_size"/> + <output name="assembly_info" file="result2_assembly_info.txt" ftype="tabular" compare="sim_size"/> <output name="assembly_graph" file="result2_assembly_graph.dot" ftype="graph_dot" compare="sim_size"/> </test> <test> - <param name="inputs" ftype="fasta" value="E.coli_PacBio_40x_first_200_reads.fasta"/> + <param name="inputs" ftype="fasta" value="nanopore.fasta"/> <param name="mode" value="--pacbio-raw"/> - <param name="g" value="1.1m"/> + <param name="g" value="10000"/> <param name="i" value="2"/> - <output name="contigs" file="result3_contigs.fasta" ftype="fasta"/> - <output name="scaffolds" file="result3_scaffolds.fasta" ftype="fasta"/> + <output name="contigs" file="result3_contigs.fasta" ftype="fasta" compare="sim_size"/> + <output name="scaffolds" file="result3_scaffolds.fasta" ftype="fasta" compare="sim_size"/> </test> </tests> <help><![CDATA[ |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 macros.xml --- a/macros.xml Fri Sep 28 19:18:54 2018 -0400 +++ b/macros.xml Thu Nov 29 04:34:34 2018 -0500 |
| b |
| @@ -1,7 +1,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="2.3.5">flye</requirement> + <requirement type="package" version="2.3.7">flye</requirement> <yield/> </requirements> </xml> @@ -20,4 +20,4 @@ <yield /> </citations> </xml> -</macros> \ No newline at end of file +</macros> |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 test-data/E.coli_PacBio_40x_first_1K_reads.fasta --- a/test-data/E.coli_PacBio_40x_first_1K_reads.fasta Fri Sep 28 19:18:54 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,115822 +0,0 @@\n->m141013_011508_sherri_c100709962550000001823135904221533_s1_p0/29/0_6709 RQ=0.843\n-aaacccacccaacccaagggaaaaaaaaggaaggggaagaaaagattttaaataaatggggggggtttgcccccggttgg\n-aagcgggggacccccaaaccggggagtgggaaaataccgggtttttatttgcgaaaaagctttgggcgaggatctccttt\n-tcatcggggccccggggttaaggtccaacttttccaccgcttcgctttccacgccggcccctgggccgcaaagttttctt\n-gtggaatgtaaaaaacacaaaatactggcctggtttgtgttttttttccagtttttttcgatcccaagaataccttcgcg\n-gttgattttcgctttaatggtttaccggtcagcgggagccaggaagacgccgcatgccgacccgggcaggatgccgccgt\n-gaaaccgtggcagacgggattaaacgcgaatggtcgttgcgcgaagtatttcccggccaaaactgcgcgccaagaccgag\n-tttctggccctcttccagcagttcctgttcccgctggaaacatcgcggaacgcctgaccatgttttcgttcccttccgtc\n-ggcagttcaatcgtaatagtggagcgcttgctaacttgacggtttttcaggttggttttttccgccagacgtatccgccc\n-aatcacaaacgcgatatgggtagcggccgggcaggctgcagtaccgagggtcgcattttttctcgccgaggagtttttca\n-gtttggccggggaagtccagcagcggctttggtttcctggtagagatacgttttgttggcagagccggccgcttttcgca\n-acggcaaggaattgtagctcatcgccatctaccgcgtacaaggtcgatttgcgcagggcaggttagtggccggtgtttga\n-cctctttgtacatgtccagcgccgcattctgtgaatagcgcaggtttatctatcttcgatataggtgttatagaacgcct\n-ttcgacagcgtttctttgcttcatcaccttacccatccgctgcttggaatagtttcgaggccgccggtccacacgcgctg\n-gcctttttaccgacgatgatcgcggtgcgggtatgctctggcaggtcggcagcacgccttttggcggcgatttcggagtt\n-ttttaagattgcagcggccacgtacttgtcgtttgcttgggcttctggatcggtgaagggccgcaacctgttttctggtg\n-tgccggccggaggcagtaaaagaagcgtcgtgacagggcttgctgcgcgccagcagggtcagggcttctggttccacgct\n-ttcagggatggtttcgccgtcgaagtcggcaacgctaacgtaatcggaagtgagtagatagttattgcggtaatttggtc\n-tttccccatcgggaaaggttgcctggtagataaagggttttgttttgacatagcttccagcctgttacctaatatagata\n-tttgtgtttgtattcgaaaatggcgtgggccgcggtagtcacgggcgcacgcaaagtgcatttataagaacgcgtacatc\n-gcggcgtaaagatccagcgaagacgcacgatacgctcacaccaatcaaaccccggcagaataaagctgtggttgatgacg\n-agcctgactcggcatggggtggtggcccggaacggtcaaactgaatcgctgcgcagatcgctcgataagtccggcaggat\n-gttaataatccgtagcaagccggtgctgacgccacgatggtatgccggactcaacgcgatcgccaagcggcgaaccggaa\n-caatcgccgccaggcgcggccgcaagcctgagagtttaacaacttgagaaaccagcagcagaaacaaagtggccatagcc\n-cacggaatactctttcaccattttcacccagtacgccctgaattccagacattgcgcgacgaaacatggtttctaggcgc\n-caatccattcataccgtacaccgccacgatggcgatcataaccgggaacggaagacttcgtttttttgagatagacgcgg\n-gattggttttggtcaggagataacttaatcagcgccccggtcagccagcataaacatcttgaactaactcagtaacatcc\n-gacagcgttttggccgccggaagggatggacgcaggtcagaatcagcaccaggaagggcggactaacaggcggatttgcc\n-ccgaggaaagggcccattgccagtccagttgcttttcggcagttttttatccagcataagcgtcgcggtatcaccgtaaa\n-catactcacggttgtcccgttttccggtacggagagttgaatttctgggaactcttcgtctttaaaatccagatcttgta\n-cgcgcggacgcagctgaacggataaccgatacggccaggataccggattaacgtcgatgggaatggtgatgtgccaagca\n-gatcgaggaactcagatgggcgaccatcaaggtgacatttacccgccagcatcgcagccagagaacactgaccggcaacc\n-cgacagcgcggatctggcgataatccgccgcatctgtgcaccgatagaacttgcgccagtcgacgttccggacggatgtt\n-gttcttaatggcggacgtcgtagatgatcggcatgaatggttgtaaaccacatgacccgtaccacaaaagaatggtcagt\n-gtaccaggtccacgaaaacggggcgcgacaatttgggaggaacatatttttcgtggttgcggcgcagcagccttcctcgc\n-aatttgcagatgacatccaagaccgccgcgaaagcttgcaaggtcgccgatgccgccaccagcggcaatgataaccaggc\n-atgaccctcaactggtggtttctggctgaaggtggaagacgaagaccagaatgaccagaccgataaccgcctaataaacc\n-cagcgcgataccaccttttctggcacccataaaacagacatatcagtattagaaataagttggatagtaaataacatgtg\n-gtgaatcgctcgcgataatcctccgtttaaattttttgctgatagatcacagtcacgttctgttttgtatgacatgtttt\n-tcagagcgctgactaaataatccgttttggtcgttacgcggggctttagcaaaattaatccctcacagtggaatattggc\n-tgattaaagcagcggcaaatttaatgcactgtagataagcggcttttttcagagagaaagactctctggcgatgggttta\n-tagttttgtactgcgcagatgttaattggttttgtttggctggcttaatgttattgatatttatcggtctatattttttg\n-ttctcacgggcagatgtcattaggttttatagattaatctgatctacccattttgtgggtaaaaaaattacacataatgc\n-ggtgtggacataatagttaattaactttttgttagcgtttttgaaatttaaaacaacgggttcacctgaagaagatatta\n-aatttttagcgctgatggagaggaaattatattggatctggacagagattttactgatgaaggatgtaacttgtgccagg\n-ggtatttttgtcattacggtaataattatttactttacagctaacgcaagcgatccgttattggaatattgttttcagta\n-gtggaagtagtggttctgcctgaataacggtaacgtaaactgacgggcccgtgacgcctaaatggatagctggtggaaca\n-cgaatgtggagtttgaccagccagatgaaggtatttaggcaggtaaacacggcgaatgttaaactcgttgggctgcttcg\n-tcgggttgaaaatttcacatagtccctgatgcgcgtcca'..b'g\n-catgcacgatgcaaagcgatgcgcgcagatcgcgccgcgcgtgcaggcgttttctacggggatcatcagccactatttca\n-gggacaaaaatggtcttgctggaaagggcaaccatgcggcgcatatcaccagtcagctgcgtgacgcgttttgaatcgat\n-tacatgcacttccgcagggcagtgcagagcagcgcgattacagggattgttggcggaaacttcgatgaaccgcaggtgaa\n-ggcagtgggcggcgattgaaacctggctgcgtttctggccagcagtatggctcagcgcgatgctctatcgtttacagcag\n-tcagcagcgcgcccgcttgctgtcgattctgtgagcgagtttcgtgcgcgcaattgcgcgcgaaacaggcaccggaagcg\n-ggctaggctggccgacgctgattgatgggcttatggctgcgcgcgctgctgagcgcaaccgctggtaccgcgcggctaga\n-ttccctgacccgccacttgatcactcagcatctacccaccgattacccggaggagacgtgatgtccgaaatggcagaaag\n-cagctttatatacatggtggttatcctcgccaccagcgtcgcagccttcgagaccattaacccggccaacggtaacgtgc\n-tggcgacgcgtgcaggcgccggggcgcgaggattgtcgatcgcgccgtgaaaagcgccagcaggggcaaaaaatctggcg\n-tcgttatgaaccgccatggaggcgctcggtattctgcgtcgccgttgatattgctgtcgtgaacgcaattgaacgaactc\n-gcaaaactggaaaccctcgacaccggaaaagcaatattcggaaacctggcaccgtcgatatcgttacgccggtgcggacg\n-tgctggagtactagcgcgggctgatcccgggcgctgggaaggcagccagatccccgttggcgtgaaacgtcctttgtgta\n-atagcccgccgcgaacgcgctgggggttagtggcagggattggcggcatggaactaccgatccagattgcctgtggaaga\n-tccgccgccgcggcgctggcgggcaggcaacgcaatgattttcaaacgagcgaagttagcccgcttaccggcgtaaagct\n-ggctgaaatttacagcgagcgggcgctgccggacggcgtatttaactgttgccggcgtggcgcggagaacgcgggcaata\n-tcttgacccgggagcatccggcaattgccaacagtgtcatttaccctggcggtggtccgccagcggcaaaaaagtgatgg\n-ctaactcggcggccctcttccctgaagaagtgccatggaactgggcggtaaatcaccggctgatcgttttttcgatgatg\n-cggaatcttcgattctcgccgccgatatcgcgccatgatggcaaacttgtcttgtccagctccggtcaggtgtagtagcc\n-aaggcaccgcgcgtcttcgttccggcgaaatgcaaaggcccgcatttgagcagagaaattcctggcgcgcgttgagcgca\n-ttcgcgcgggcgacgtttttcgatcgcggcactaacttcgtgccgctgggtcagcttccccgcatcgtcgataacgtgct\n-gcgctatatcgccaaagggcaaagaggaaggcgcgcgccgtatgtggctggcggcgatgtactgaaaggcgatggttcga\n-taacggcgcatggggtgcaccgacagtgttcactcgattgcagcgacgatatgaccatcgtgctgaaagagatcttcggg\n-gccagtggatgttccatctgacctaacgagtcggaagacagaagtcattcggccgcgcttcacgatacgcgactaacggg\n-cctggcggcgggcatcgtgacagcggacctgaaaccgcgcgcacgcggtcattcatcagcgtggaagcggtatttgctgg\n-atcaacacctgggggcgaatccgcgggcgagatgccgttggcgctacaacactcggcattggtcggcgagaacggcgtga\n-atgaggctccagagttacacccaggtgaagtccatccaggttgagaatggctaacttccagtccatatatctaaccagga\n-ggtttatttgcaatttgactacatcattattcggtgccggctcagccggcaacgttctccgctttaagcctcgtctgact\n-gaagatgcgaatacctccgtgctgctgcttgaaggcggggcggcccggactatcgctttgacttccgcacccagaattgc\n-ccgctgcctggcatttcccctgctacgggtaaacgctacaactggcctaatgaacggaacgtgaagcccgttttatgaat\n-aaccgcgcatgagtgcggcgcggtaaaggtctgggtggatcgtcgctgatcaaacggcatgtgctacagtgccgtggcgc\n-aatgccgctggattctgcgataactgggcgcaagaacccggtctggagaatggagctacttcgactgctgccctactacc\n-gaaggcgagaactcgcgatatgggtgaaaacggactatcaggcggtggatggcaccggtgagcgtcactacctccaaacc\n-cggcgtcaatcgcgcgctggtttgaaggcgagtgattggaagcgggcgtgcaggcgggtaccgccgcgcacgacgagtct\n-caacggttatcaagcaggaaggttttggttcgatgggatcgcaccgtcacgcgccgcagggcgttcgcgccagcatagcc\n-gcgcgtggctattctcgagtcaggccaaatagcgtgtcctaaccctgacgcattcgtactcacgcttaatgacggcgatc\n-acatcattttttgacggcaaacgcgggcggtgggcgttcgcaatggctgaaggcgaccgcaccatccaccgcgcaacggc\n-caacgaaagaagtgctgttatgtgcaggcgcgattgctcaccgcagaatccgctgccaacgctcggcgtcggaacgctga\n-aagctgctggcggagtttgatctttccgctggtgcatgaattacccggcgtcgcgaagatcttccaggatcatctggaga\n-tgtatctgcaatatgagtgggcaacagacccggtttgcctctacctgcgctgcagtggtgggaaaccagcgaaaatcgtg\n-gcggagtggctgttttggcggcactggcgtttgttggccagcaaccactttgaagcaggtggggatttattcgcagccgt\n-gacggaatttgcgtggccggaatattgtcagtacgcatttcctgctcagttagcgattaacttactataacggctcgaca\n-ctcgcacgtggaggagccagcggttttccgtgccacggtcggctcaatgcgctcgcgcaagcccggtgtggccatgtgcg\n-gagtaaatcgccgcgacccgcacagcatccggcgattctgttaactacattgtcgacgcgcaggactggaggagttccgc\n-gacgcaattcgcatcagagcccgcgagatcatgcatcaaacccgcccggctggatcagtatcgtggccgcgaattcagac\n-ccggtgtcgatgtctagacggatgaacagcctcgatgagttcgtgcgttacacgccgaaaccgcttctccgtgcggtacc\n-tgcgcaaaatgggtacgacgagatgtttcccgtggttgacggcgaaggcgcgcgtacacgggtagaaggcctgcgtgtgt\n-ggatgcgtcgattatgccgcaagattatcagcggggaatttgaacgccagcgacaattatgattggcgagaaaatagcgg\n-atatgattccgtggaacgggggcagaagcgctgccggaggagcacggcgggatatttttgtgggcaagatgggatgccgg\n-tgagagcgaaaaaatgagtcgttgatgtgaactaacgcaggaaccgattcagatttttg\n' |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 test-data/E.coli_PacBio_40x_first_200_reads.fasta --- a/test-data/E.coli_PacBio_40x_first_200_reads.fasta Fri Sep 28 19:18:54 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,24342 +0,0 @@\n->m141013_011508_sherri_c100709962550000001823135904221533_s1_p0/29/0_6709 RQ=0.843\n-aaacccacccaacccaagggaaaaaaaaggaaggggaagaaaagattttaaataaatggggggggtttgcccccggttgg\n-aagcgggggacccccaaaccggggagtgggaaaataccgggtttttatttgcgaaaaagctttgggcgaggatctccttt\n-tcatcggggccccggggttaaggtccaacttttccaccgcttcgctttccacgccggcccctgggccgcaaagttttctt\n-gtggaatgtaaaaaacacaaaatactggcctggtttgtgttttttttccagtttttttcgatcccaagaataccttcgcg\n-gttgattttcgctttaatggtttaccggtcagcgggagccaggaagacgccgcatgccgacccgggcaggatgccgccgt\n-gaaaccgtggcagacgggattaaacgcgaatggtcgttgcgcgaagtatttcccggccaaaactgcgcgccaagaccgag\n-tttctggccctcttccagcagttcctgttcccgctggaaacatcgcggaacgcctgaccatgttttcgttcccttccgtc\n-ggcagttcaatcgtaatagtggagcgcttgctaacttgacggtttttcaggttggttttttccgccagacgtatccgccc\n-aatcacaaacgcgatatgggtagcggccgggcaggctgcagtaccgagggtcgcattttttctcgccgaggagtttttca\n-gtttggccggggaagtccagcagcggctttggtttcctggtagagatacgttttgttggcagagccggccgcttttcgca\n-acggcaaggaattgtagctcatcgccatctaccgcgtacaaggtcgatttgcgcagggcaggttagtggccggtgtttga\n-cctctttgtacatgtccagcgccgcattctgtgaatagcgcaggtttatctatcttcgatataggtgttatagaacgcct\n-ttcgacagcgtttctttgcttcatcaccttacccatccgctgcttggaatagtttcgaggccgccggtccacacgcgctg\n-gcctttttaccgacgatgatcgcggtgcgggtatgctctggcaggtcggcagcacgccttttggcggcgatttcggagtt\n-ttttaagattgcagcggccacgtacttgtcgtttgcttgggcttctggatcggtgaagggccgcaacctgttttctggtg\n-tgccggccggaggcagtaaaagaagcgtcgtgacagggcttgctgcgcgccagcagggtcagggcttctggttccacgct\n-ttcagggatggtttcgccgtcgaagtcggcaacgctaacgtaatcggaagtgagtagatagttattgcggtaatttggtc\n-tttccccatcgggaaaggttgcctggtagataaagggttttgttttgacatagcttccagcctgttacctaatatagata\n-tttgtgtttgtattcgaaaatggcgtgggccgcggtagtcacgggcgcacgcaaagtgcatttataagaacgcgtacatc\n-gcggcgtaaagatccagcgaagacgcacgatacgctcacaccaatcaaaccccggcagaataaagctgtggttgatgacg\n-agcctgactcggcatggggtggtggcccggaacggtcaaactgaatcgctgcgcagatcgctcgataagtccggcaggat\n-gttaataatccgtagcaagccggtgctgacgccacgatggtatgccggactcaacgcgatcgccaagcggcgaaccggaa\n-caatcgccgccaggcgcggccgcaagcctgagagtttaacaacttgagaaaccagcagcagaaacaaagtggccatagcc\n-cacggaatactctttcaccattttcacccagtacgccctgaattccagacattgcgcgacgaaacatggtttctaggcgc\n-caatccattcataccgtacaccgccacgatggcgatcataaccgggaacggaagacttcgtttttttgagatagacgcgg\n-gattggttttggtcaggagataacttaatcagcgccccggtcagccagcataaacatcttgaactaactcagtaacatcc\n-gacagcgttttggccgccggaagggatggacgcaggtcagaatcagcaccaggaagggcggactaacaggcggatttgcc\n-ccgaggaaagggcccattgccagtccagttgcttttcggcagttttttatccagcataagcgtcgcggtatcaccgtaaa\n-catactcacggttgtcccgttttccggtacggagagttgaatttctgggaactcttcgtctttaaaatccagatcttgta\n-cgcgcggacgcagctgaacggataaccgatacggccaggataccggattaacgtcgatgggaatggtgatgtgccaagca\n-gatcgaggaactcagatgggcgaccatcaaggtgacatttacccgccagcatcgcagccagagaacactgaccggcaacc\n-cgacagcgcggatctggcgataatccgccgcatctgtgcaccgatagaacttgcgccagtcgacgttccggacggatgtt\n-gttcttaatggcggacgtcgtagatgatcggcatgaatggttgtaaaccacatgacccgtaccacaaaagaatggtcagt\n-gtaccaggtccacgaaaacggggcgcgacaatttgggaggaacatatttttcgtggttgcggcgcagcagccttcctcgc\n-aatttgcagatgacatccaagaccgccgcgaaagcttgcaaggtcgccgatgccgccaccagcggcaatgataaccaggc\n-atgaccctcaactggtggtttctggctgaaggtggaagacgaagaccagaatgaccagaccgataaccgcctaataaacc\n-cagcgcgataccaccttttctggcacccataaaacagacatatcagtattagaaataagttggatagtaaataacatgtg\n-gtgaatcgctcgcgataatcctccgtttaaattttttgctgatagatcacagtcacgttctgttttgtatgacatgtttt\n-tcagagcgctgactaaataatccgttttggtcgttacgcggggctttagcaaaattaatccctcacagtggaatattggc\n-tgattaaagcagcggcaaatttaatgcactgtagataagcggcttttttcagagagaaagactctctggcgatgggttta\n-tagttttgtactgcgcagatgttaattggttttgtttggctggcttaatgttattgatatttatcggtctatattttttg\n-ttctcacgggcagatgtcattaggttttatagattaatctgatctacccattttgtgggtaaaaaaattacacataatgc\n-ggtgtggacataatagttaattaactttttgttagcgtttttgaaatttaaaacaacgggttcacctgaagaagatatta\n-aatttttagcgctgatggagaggaaattatattggatctggacagagattttactgatgaaggatgtaacttgtgccagg\n-ggtatttttgtcattacggtaataattatttactttacagctaacgcaagcgatccgttattggaatattgttttcagta\n-gtggaagtagtggttctgcctgaataacggtaacgtaaactgacgggcccgtgacgcctaaatggatagctggtggaaca\n-cgaatgtggagtttgaccagccagatgaaggtatttaggcaggtaaacacggcgaatgttaaactcgttgggctgcttcg\n-tcgggttgaaaatttcacatagtccctgatgcgcgtccaa'..b'ggcacaggggcgacaccattttgatgttgaacgcctttcgatgcccgctgggcttacaacgtgtgatggt\n-ggtggcgtggcgaactgaagtttgaaaacttcaacgccggcgtcggtcaattataaaattgtcggtaaaaatgttcatcc\n-gggccggcgaaggagtgatggtaatgcgctgtcgctggcggcacgtaattcattgcggaagtttccggcgatgaaagccc\n-ggcaaattgacagaaggctatgaaggtttctattcactggcgagcatgaaaggcacgcgttgaacggcgcgatatgcact\n-acatccatcgcgtgatttcgacgtaaacagttttgaagcgcgtaaacgtaaaagatgagaatcgccaataaaagtgggca\n-aaggtttacatcctgattgctacatgtgaactggtgattgaagacagtttactacaatagcgcgagaaagtggttgagca\n-tccgcatattctcgatatcgcccagcaggcatgcgcgaattgcgctatttgaaaacggcggaactgaaaccgatccgggc\n-ggtgttagccgacgcgccgcagtttgtcgtttatgggaattacccgtggccgaacctgttcactggcggtttacaactac\n-atggaagcatgagttttgtgtgactctggaaggtatggaaaaaagcggtgcaaggtgatcgtccgtattgcgagttaacg\n-ggcgcaacggaagtaagcgaaaagggatgcggcatgtgatgccgatcccggcttaaatccaaactttacccttcgaagaa\n-ccacaataccgctattgaccagcgccgcgagcatcgcgaggaatgggacgatcttcagcgcatcgccaaaattctccgca\n-gtcaagcgcaatgttgctgcgagtgcatccagtgccggacgtggcggaatccgatcttctaaccattggccatacacgtc\n-gtcgccaatgcgcaatacgcgcagaccacccaggcggcaccagcactcacccttgtttcagcgcatcgtagattttcatt\n-ccgctgataaggcggctctgggcggcgcgaataatccagtttcatgacgttgactgggatttaaactcgccaaaccacct\n-tggcctaaagtgttccggctggttgatcaattcgaagcatcatctcacgcagttttatccatctcttgcgcagccacatc\n-cgcaaggatgaagccgcgaggtgggaaatccggatcgctgtaagtagttgcccgcccagttcacgttgcagccacataat\n-cggcaaatccactaatcagttcgcgtatttgggcgcggcgaaagcccacggaaatagtttcatcgcatttttcagcgcgt\n-agccttcatgcgggagatcctggcgggaatataagaatatcacaggctccagctcttcatcgatgatggcttcgacggat\n-cgacctgtaaccgatccggatgtggcagtggctgtttcatttgcaggcttttcgcccactcgccagcgacgacgtccgta\n-gctgaatgataaacacgtgtactgatcgagatcgggccgccccgccgcgggtacagaaaaagaataaatcagatcatcaa\n-tacggccagtccggtaggttcacgtgaaccggtcgcatagcgggcggcggtcgcctcatgccagttggttcactgagcct\n-gtaccagtaatgaccagttggtttccaccgagatgatcgtagctttcgaacgggcgtggcctgaccgctgccatttgcca\n-tcgctggtgactgaccagtcgactgttcaactcgctttcccatgcggccagacccgccaactcgtctggaagatcgggtc\n-aataaaaattattaaagccgcgttttaacaccaccgggcgttctgccagtgacgtcaagaacatctggccagttaaagag\n-tgagttggtatttccatgttaacatccccacaggctgtaatctgcaacgatttataacggatgcttaacgtaatgcgtga\n-aagtatggcatatttaattcatctttcggcgcagaatgctggcgagccccaaaatcacctccatcccgcaccgccggcca\n-gcatgcctctctccggcgacgattttacctcatattgctgcgtgatttcgcggctcgccaagccctacaccttgccaggg\n-cgtaaagtatcaacccgtttgaccagcggtcgaaaatgacctctgctgctttaaatggaataccggggccatcatcctcg\n-acgacaataaatagagatgctcgtcggtttgccttgcagaaatttcgaccaaactcgaggcaatatttacagcattatcc\n-agcacgttgcccatcactcgacaacaatcgtttctgctcacgggacaaagctgatctctggcgaaatatcgagagagata\n-ttgaccctttgcgttggatacatctttgttcagccgctgtggtgagattggtccagcagtggggcgaccgatgcagctcg\n-cggctgagcatgtcccccgccgcgcataatggcacgatgcaggtaagtagccatttgcctgtgaatgcggctgatttggc\n-tccagcataccggctcagcatcactgacgtcatttttccactacgcaagagaacgcagcgtactttgccagcaccggcca\n-tgcgtttttcaggactatgggtcaggtcgtgagcggtcgtacggtatttgtcgtaacgttcgcgtttcactttttaacaa\n-ctcggttcaggttttcgtacgcagactgggtcattctcgcgttgtggctgggattgacaattcgcggttatgttctttcc\n-atttcgcggacctcttttggccagggcttcgatggggcgtaaactccaccaggacggcgaccacagcagcggatcactaa\n-acagcagattggcgagagggcacatagataaaccagctccagactcatatggaactttttagcttccaccgaatggtatc\n-caccaccacaaggtgtaattttgcaatcccgcgatgttgccggtagaacgtttctgccaccgagtgggttccatctccgt\n-cgtcgtcatcagtcttccgcactttcttgaccactgttgctgtaatcagaatgatcgtccactcagcaaggaggctgtat\n-cgtttaacatcgcgcttcaaatttcatgaaaccattcgatttcagccagtcaggctggatcatcttcatcagccagggca\n-gcgtcacgttgcgccataaaaagcttgccgttctcattcataaattagcgcatgtggggggctttggcttgtcgatatat\n-ttcgggtaacctcgacatgcaacttattgttttcccacttcgcagggtatagaacagattgctctcgccacgtaacagcc\n-gaaacgtagtttttaatcgaaactgacgctaatacaccgtcagcgcgaccattccgtaggcaaagcgacaagcacccagt\n-actacgctgccgttgccaacagaaaacgtacccgcagcgaccagagcgggggaaaaaaaagacgcagtaaatttttttca\n-atcagcgcaattcgaacagatagccctggcccgcgaacggtgggtaaattcacttcccttggggatattgtggcctgaat\n-tttttgcggcagacgtcgcatcagtacatcaaaatggtatggcttttcccgcaagctcgctccggatagagtggagcata\n-cagaatctttggctgaccactttggccatattgcgtatcaacgtttccataatagtgtattcgaagcggcggtcagtttg\n-atcaacttcgtcattaatagataacttcaacggcgagagagatcaacctgaaacggggggaggaaatgacgctgtgaagg\n-ccagaccgctattacgccgcattaatgcctgcattcgcgccatcacctcttcaataatgaaacggtttagtt\n' |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 test-data/Loman_E.coli_MAP006-1_2D_50x_first_500_reads.fasta --- a/test-data/Loman_E.coli_MAP006-1_2D_50x_first_500_reads.fasta Fri Sep 28 19:18:54 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,1000 +0,0 @@\n->a019fb87-85b7-495a-b6dc-789a2f8c4572_Basecall_2D_000_2d LomanLabz_PC_Ecoli_K12_MG1655_20150924_MAP006_1_5005_1_ch206_file49_strand_twodirections MAP006/MAP006-1_downloads/pass/LomanLabz_PC_Ecoli_K12_MG1655_20150924_MAP006_1_5005_1_ch206_file49_strand.fast5\n-TACGCATAAGCGCCAAAAGCACGCCGGGCGACCATAATGAGAAGATGCTCACCGCCAGCGTCAACAGTAAGTAGACGATGAGAGCGCCAGGGTAAACAGTTTGCACGGGCCGCGACGAAGGCAGTCGATAATGCCGCCATTGCTGGGATGCTCGCCCCCAGACGCGCATAGGCATAACCGGAAAACATCGCCACAATACCGCCAAAGCAAAGGCGACCCCAGGTCGAGGCTTCCATTAGCAATGCAGCCTGCCCCAGCAGCGCGAAGATCGCCGCCCCCACCATTGCCCCGGATTATCGATGGAAACGACGTTCCAGACCGCGGGTTTGTTACCGTTATTACCTTCCGTGTTTCATCATGTAATAGCAGCCCTTAGTAAACACGTTATAGCCGAAAAATTGCTTAGCGACCGATGCCACCATTTTTGACCGCGAACACTGTTGCCATCTTCGTCCAGCGGTGGTGAGAGAACGCGGCAATTCCCATCACTCCAGGGGACGACCACGCCAGAATACCGCCACCTACACCCGGTTTACGCCCGGTAAACCAACACGATACGCCCAGTCACCGGGAACATACCCAAGACTACAGCCCTTCCATCATCATTTCGTAAGAATGTACGGCACGTTGTCGGCCTGAAGAACGCGTTCCTGCGTCAACGATTCGCACACCACCTGCGCCGCGCTTGTCGCGCCAAGCGTTGCCAGTTCGCTACGTGGTCGAGGAGCCCTTGGAGCACTGACGGGTATACACGTCACAGGCTTCCCATTGCATCACAATAGAGATATCCGGCGGAGTAAGCAGCCAGGCTATGGCCCGGTTATGGAGACTTTATTTGTTTGTTCCGACTGGTTAACTTCGTCAGAGAGCGCTACCTGCTCGCCAGCAGTTTGCTTTGGATATGTAAATTCGCTGCCAGCGTTGTTCAACAGTTTTCAGCGTTAATCAGGCTATCTTAGGCAATAGCGCCAGGATAGATTCACCAGTGGCGGGAAATCGTTTGCCGCGGATGCAACTCTAAGGCGATAACTGAGTTACGGGGCAAGATCCGGTCGGGTCCCCACTAGGGATCTTTGTGTCGTACCGCCTGCGGGCCGCACATCTTCCAACGCAAGGGCTAACGTACAGAGACTTTCGAGATGGATTCCAGTGCAAAGCGTAATCACTGTCACCGCACTACGACGTTGCCATCGCGCAGTACACGATAGCCACTGCCGCCAGTTGACCTGGTACATTCGCCGAAGGGAATGTAATCGGGCATTTTGTCCGCCGTTAAGTGAGTGAGAAATTGGGTGTAAGCCTGATCTGTTACGGAATTGCCTGCTGTAATTTGTTTGCATCTAACAATATTTTCTTGTTAACTCCTTTTATAAGTCTCGGGAGGTAATTCCTCACCGGCTGGTGCCGATTTCAGGCATCCTGATTTAACTTAGCACCGGAGACTTAACTACAGGAAAACACAAAGAGATAAATGTCTAATCCTGATGCAAAAACTGCATCAGCAAATTTTTAATCTTTACGGACTTTTACCGCCTGGTTTATTAATTTCTTGACCTTCCCCTTGCTGAAGGTTTAACCTTTATCACAGCCAGTCAAAACCGTGTGTAAAGGGATGTTTATGTCAAACTATCGACCTGACCCTCTGGACGGCCTGTCTGCGGCGGTCACTGCGTTAAACGCGTGAAAGAAAGTCTTGAACAGCGTCGTCCGGGATGTTGAGCAGGCGGATGTGTCTATCACTGAAGCACGTTACCGGGACTGCCGAACAGGCTCGCTAAATTGAAACCATCAAACAAGCGGGTTATGACGCATCTGTAAGCCACCCAAAGGCTAAACCGCCACAGCCGTGACTGTTATGTT\n->d74a5991-1f66-4b48-b387-07319ac37082_Basecall_2D_000_2d LomanLabz_PC_Ecoli_K12_MG1655_20150924_MAP006_1_5005_1_ch92_file5_strand_twodirections MAP006/MAP006-1_downloads/pass/LomanLabz_PC_Ecoli_K12_MG1655_20150924_MAP006_1_5005_1_ch92_file5_strand.fast5\n-AAGCTGATATTGCTAGCCATATCGTGGCTACCCATATGAATACTGCCAATCAGATGAAAATGGCGATTGCCGGGGGAGGGTGATATCGATGGCAGGCCAGGTGTAATGATTACCGCGCGACGCATCGGAGGCGACCCGTTTTTACCCGGTGTACAACAGATTACAGGCCACGACCTCCCTTTGTGAAATATCATGCCCTCGCGCGGTGAGGGATGGCGCAATCGGCGATTGGCGACTTGTTTAATGTGTTTGTATGATTCAGTATGTTCTTGCATCGCTATTCACAAGGAAGCAACAGTTAAAACCATGAAACAGGCAACAAGAAAACCGACGACACCACAGCAGATATTCTTCTCTATGAATATCTGGAAGCCTGATTTGAAAATCAATGAGTTAGCAGAGTTGCTGCATGTTCATCGGGTGAGTTTTAGTGCACTGATCAATAACAATCGTAAACTCACTACTCCATATGCATTTTGTCTCCATTTTGGAAACACAGTCGATTTTGGCTAATACCATCCAAGTCGTGGTTGGGAAGTTGAAAACAACATGCGCACCGAGGAAGAATTGGACGGATTGAAACATGTAGGGCTGATTTGGCGCCGTGAAGAGCGTGCAAAAAGGTCGCGTAAGGCCAAACACCTCCATCTCGTAGGCCGGATAAGGCGTTCACGGAGTGCGGCATGAGGCGTGGATCCGAGCTTACCGGTCTTAGGACCCTCCAAACTTGCTGAACTGCGTCTAGCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCACATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAATCCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGGAGCATGAGCGGCATTCCATGCGTCGATGCCAAGTGCGCCACCCTAAAGCAGCGCATCCGCATGATGTACTTATTCCTTCGGGTTTAAACCGCAGCAAACCGGTTGGCGTTACTCACTACGGTAATCGACGCCGAGAGCGCCATTGCCGCTCCGGCGATAGCCCGGGTTAAGCAGTGTTCCAGTGAACGCCAAATACCGGCGGCGACCGGAACCCGCATGATACTGTTGTAGATAAACGCACCGAGCAGGTTCTGCTTCATGTTGTGCAGCCCTTCGCGCGGGAAAGCGAGCGCATCCGCAACGCCCATCAGGCTATGGCGCATCAGGGTAATCGCCGCGGTTCAATGGCAACAATACCTCATGCCACCCATCGCAATGCCGACATCCGCCTGAGCCAGCGCTCCGCGCGTCGTTAATGCCGTCGCCCACCATTGCCACCTGACGTCCTTCACTTTGCAGATGTTATCCAACCTTCATAGTTACTCGTCCGGCTACGCGGTCGCGATCACCTCATCAATCCCTGCTTTCTTTAGGAAGTGCATTGGCGGTGGTTCGCTTATAGAGACGTCAGCTCATCGGCGACTAATCTCAGTTGTATGCAGTTCCGCCACGCTATCACTACGAACACGGATCGCGTACTGCGCACCAGGGCTACTCGCTTTCCCGTCAACCGCAGCACAGGCGTTGCCCCTTGCGAATTGCCTGAGCAGCTGCCTTGGCCACTTCGATAGCTTTG'..b'GGATGATGCCGTTTGCTGTGGCATTACAGAAAACGGGCGAGCGTGCCGCTGGCGGTGAAAGGGCTCATCTGACATTGAGGTGTGGTTACGGGCCACATATGATGCTGGGGTGTTTGTTTGTCTTGTCGGCGGTTATTGGGCTATTTATCTCCTAATACCGCGACGGCGGTGTTACGATGGCTCCGATTGCGCTGGCTGCTGCCAAAACGATGGGGGTGTCGCCGGTGGTCCCATTCGCGATGGTCGTGGCGATGGCAAGCATCCGCCGCCTTTATGACACTCCATTCTTTCACCTGTTAACACACTGGTTTTAGGTCCGGGAAATGCACTTCAGTGATTTGTGAAGTTGGGGGTACCGTTCACCATTATCGTGATGGCGGTTTGTGTATGGGTGTTGACCCCGATGCTATGTTTCCGTTTTGACAAGAGCCTGATGTCGCATCCGGCGCTTATTGCCTGATGCAAGACGCAGACTCCGGCTGCTTACAGCGGTGAATCCTGGCTAATCTCATCGAGCGAAAGATGGAAATGGAACAAATATTTCCATGAAGCATCTAGTCCATCTCCTTGGCTGCGACGCCGCATTCAGCGCGTCGCTGCGAAGTCGGTTTTGCCACGACACAAGAATTCTTTGAGTCTCGTCGGCCGCGAGTTCTTCCAGACATTCAGATATATGCACACAGTGCATTATTCGCCTGTTTCACCAGCGAGATTTTCTTCATCGGGTATGCATGCACTCGTCAATTAACGGCGCAAATATCCCGCAGCTCTTCCGGAACCGTCATCGACCAGTTTTGCTGAGCGATTTTCTCAATAGCCTTGTACTCCTGAGCGATTTGCGAATTGAAGTATTTCACCGGAGTAGGGGGAGCAGTGCCCCCCTTACCCACGTGCCTGAGGCATCGTGGTACATCGCCAGTAAAGCGATACGTTCGGCGTTGACATTACCGCCAAATTTTCGATTTTGATAGCTTGCCAGCGCATGGGCGACCATCGCTACCTGCAAAAACTGTGTTCGCAACATTTTCGTCCCGCACGTTGCGCAGGAGTGGGATGGAGCATTCTTAATGCGTGCCAGGCGGGAGAGAGATGGGCAAAAAATGGCTCTGTTTCATACCTGACCTTACGTATGATGACATCATCAGGTCATTGTGGCGGGATAACGCTGCCGGATGCAATCTCCGGCAGTGAAGTGAGAATTACAGTCGATGATAACCAGAAAAAGGGAAACGCGAACTTGCTAAGACAGCTCATCATCGACACGCGGTAGCGTACAAATGCGGAAACTTAAGCGGCCACGGCCAGTTGAATGCGTCCCTTGCACCAACAGAACTTTTTCCCTGCAACAGGAAATTCGAACCATAGGATTTCTGATCGTCGTGAATGTTAAGCGTTTGGCGTCGATTTTCGGAAGCACTAGAACCCCGAATGTTTCCGCCCGCAGGAAACGCCCGGAATATCGTTGTAATCAGTTCCCCACGCGCGGTTACACGCTGCTCATAACAGATAAAGAATGCCAGGGGTAATAAATTCACTGATGCTCTGGACTATCAGGCCCCGGTCTGAATGGCGTGTTGCGCAGGAACGTTAGCACACAGGCGCATTGAAGCGCAGCCCATTTCCCAGGACCTTCGATGTAGCCTTTGGCGTGTTTTTCGGCCCGTTCAACTCGCAATCGCCACCCCTGACGGAAGCCTGCAACGCGGTACGTTTCGACAGTCCGTTAAAGCATATTCACCAGCATTATCAGGTGCCAGCGGCGACGTGAGTGATGCTCAGCGTCGTAGGAATTTTGTCATAAATTTCATCGGCGACGATGGAGATTATGCTGACGTGCAATCTCCACAATCTCCATTAAAGCTCTTTGGAATATACCGCGCCGGTTGGGTTATTTGGGTTGATAATAACGGATCCCACGCGTACGAGGCGTAATTTAGCGCCGAATATCATCGGAGTCCGGGAACCAGTCAGAGGATTCATCGCAAAGATAATGCACCGCTTTACCGCTGGAAAGCGAAACCGCCGCGGTCCAGAGTGGGTAATCTGGTGCAGGAACCAACATTTCGTCCCCGCTGTTCATAGCAATGCCTTGCATTGCCTGAAAGCAATAAGCTCGAATACACCATTGCCGATGTAAATATCTTCGCAAGTGTAACATCAAGCATGCCACGAGCCTGGTAGTGCTGCATGATGGCTTCACTAGGAGGATAAAGACCTTTGGAATCGGAAAATACCCTTGAGCGAGCTTAACCCATGCGTATCACGTCAACGAGGATTTCATCTGGCGCGTCAAATGGGGCATCGCTGGGTTGCCGATGTTCAGTTTCAGTACCTTGTTACCTTCTTCTTCCAGGCGTTTGCTTCTTTCAGCACCGGACCACGGATGTCATAACAGACATTCTAAATTTGCTGGATTTTCAATGGGGGACATGAATCTTGACCTTTTGCTGTTATCGCGCCACTCCCTGCCGTGGAAGTCAGCTTAGAACAATGTGATAACTCCCCCCAGGACGGTGTTTGAAGACAGGTCTGCAGAATAAGATTTTGCCAGAGGGGAAGGCTCGATTGTGCTGTTAATAACTTAATAATGACAAAATAATGAGGTGTATGCTTTACATGCAATGTTATAGTGAATTGTTCTGATTCTCTTAATTGTAAAGTGTCTGGTTTTATCTTAAAGATAATTGTGAAAATGCCTCATTTAAGAATTCACTAATGAAACGCGATGATTTCCTCATTACGGAGTTTAACTGCGTGGTGATGATTTCGAGGTGTCGCAATGGGGGCAAGTGTGAAACTATTGTTAAGCGGAATTAATGAATGAGGATGATGCTAATTAATTATTATTTAATATTCAAAAGTATTTCTTTTGATGTTGCTTATTAATAAAGAAGATTACTTTGCCTAACATAACATAACTTTGCATCAGATAATTCGCAATGACCCTTATAAATAAAGGTTTTGGGGGTAAAAATGCTCGGATAAATGACGGATTGCTGCTCTTGATGCCTAACTCGATGCTGTTGGTACGTTCCGCGTATGACCAGCGATGATGCTGCACGAGAGTGGAACAAGCATACGGATTTACATTTATACAAACACGCGCATGTCATAAATAGAAAAGAGTGAGTAACTTAATAGATATGCGTCAACCCTGAAGATATATTCTGTGATCTACTTCAGGCATTATAACTGAGAACAATGTGGCTTGGCCTTTTAGTGCAACTCATTGCATTTTTACTTTCGTCCCGGGTTCCGGATGAAACTGCCAGGGAGGCACATTACAAATGAAATTGCTTGTTTGTGTGCACAGCATTAACCAGCTCATGAGCCGCCAGTAATGATAATATGATAAGTGCAAATCGTCCGATAATTAACCTCATGACCTCGGAGGTCAACTTGCTGAGAACATTTGTTGCTGTTGCCGTACGGACATTTTCTGCTGCCGCATGATGCCGCTGTGTCGTACTCAGTCCGCCGTAAGTCAGCAATGCAGCGTCTGGAACAACTTCCGTTGGGAAAGAACTGTTCGCCTCTATTCTGACGGTCGCAACAAACTGTTAAACCTCTGAACATCTCAATTCAATTCTTGGTTACGCCAGGAAAATCCTGCGTTTTAATGGCGGCTTGAGGGCCATCTCATCATTAAGTATTTCAGTAATCTTCAGGGCGTATGGTGTCAACTATCGGTGTGCTTCAGTATCGGAATCTGCCGATACGTGATTAGCTTTTCCTGTTAAATCGCGTGAGTTTCATTTATCCGAAATTAGCCCCTGGGAGATGTCCGCGTTAAAACGGGCATGCCTATGGCAGAAATGCTGGGAATTCTACGAGGAAGTGGATTTGATGGTGTAACCCCATCGTCCTTCAGCGTTTAAGTACGCATTGAACCTGCGTACCTCGCCAACACACTGGTACTGCGCAGCGCAAATACATATTGCAAAAGGCGAGCCGTACGCTTGTATTGCTGGTAGATATGTACACGTTCTGTTTATGTA\n' |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 test-data/nanopore.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/nanopore.fasta Thu Nov 29 04:34:34 2018 -0500 |
| b |
| b'@@ -0,0 +1,418 @@\n+>bf06004a-705a-4fe9-942a-2dcabf04766e\n+CTCCATTGTACTTCACCAGTTGCATTATTGTTGCTAGAGACAGCGCTGTGACATAGCCTGCAGCACTTATTTCCTTCGTATCTTATATATGTATATATATGTGCAATGTCATGTGATAGTGCTGGAGGAGGTATAGGCACACATATAAGCGATCAGCAGCCAGCAGGAGAACGCGACCAGGCAATTAGCTGCAAGAGTGGGTGCTCGTATTGCAATAATACACTTGTGCTGGATGTTTATGTACACATTACAGCAAGTGCACAATTATGAATACACATAGGTACAGTGCTTAACCGATATGTGTGCATACTACAATGAGTGAAAATTTGTATTCTAGGAGGTCGCAGAATCGCGGTACTTCTTCAACTGTTAAAGAAGTGCCGTCACAAAGAGACCAAAAAACTCAATGCTGTGCAAAGGTTAATCTAACAGGCTTGGAGCCGCGCAATCCCCTGGTGCGGAGACCAGTCTACATCGCCGTGAAGACGGATGTAAATTACGCGACCGCCAGACCATAGAAGTTGTGTCGTTATTGTGCGGCAAACTGGCAAAAAATCACACACAGTGAGTCGCGCCATAGTTCTGCTGTCACGCGAATTGTGCGCCTGTTTCATGTAATAGGTAATTTATTATCTTGCGATTGTTGCAGCGGATAAGCTGGCAATGCTTGCAGCGAACGATCTGGAGGGAGGCGTTGCCAGATCAACCATTAATGATCAATGTTGATAGTACGTGGGCGAAATTCATTAAAATTTAAAATTAGGCAAATTTAATTTAATTTAATTTTGATTGGTAACTGGGGCGCACAAGTCTTTAAGAAAGGGAAAGGCACAAAGGTCCGGACAGATAAGCTCATCTCACCGTGTAACAGTTGCCTAAGCAGAGGCTCTGGTGTGTCCGAGTCAGTGCAAACCTCCATCCGTAAAAGCCGGAAATCCGTATTTGCGGCTGACCCTGGAAACAGCAGGCCATCCTTCAGTTGATGGACAGCCTGCCAGTGGGGCGATTTCGATCGCAGCGACGTTCAGAATCCCCGACTTTCGAGATCGGAGTCAACCCGACCCATGGTGATCGGTCCCGTCGGTAATGGCAAAGGGGTGAGCTTTACGCAGGCCCCAGCCGCCGTTGACGCTATCGACCCAGCGATGCGGAATTGAAACCGGCATCACATTTTGGCTCTAAGTCGAAGACGATGGACCCATCGCCATTACCATCACCAAAAAAGACGGGAGGAGATCCCCAGCTGGTTCCCCTCATCGGTCTTCGGACTTGACCACTGCTCTCCAGAACGAGGACCTGAGGCGCGCACCAGGATGAATGAATCCAGCCCCCCTTCTATCCACGTGAGACCCAACGACACACGCGCACTTAACACGGGGCCAAGGCACGCCGCTGAACTCTATTAACAACGGGCGATAGAACATGCAGAAGGTACTACTGGCAGCACCGCTTGAAGAGCAGCGCTTGCAGACGGAGGGTACACAAAAAAGCCACCAAAGGCTCCACAAAATGCGCAGGTACACCCACGTTGCGGATTGTAAAGTCAGGCATACAGAGCAACCCGTTGGATGGCAACGGTGAGCGTGGCATCCACAACAGGTCCAAATGAGCAGCTAATGCATCTGTCGCCAGAATGCTAGCACGGGTGCAGAGGCACTCATCATTAAGCAGGAGAGGCTTCGTACGCAGAGATGCTACCGGAAGCTAAGATCGAGCCTTAGCGAACTGGTTGAAAAAAATCCGGAAGAGAGCAGAAGTGATCCTCTGTTGCTTGGCAGGTGGGGAAAGCTTCGGAAAGCGTTCCGTTTAAAACGACCTGGAAGCGGCGCTCAATGACTTAGCCTCTGTGTGTGCTGGAGCTGAAAGAATAATGGCGCTATCTTGGCGGATTAGGACGAAGTACGACAATCCCACAGCTGCTTGGTCGCCCAATTCAGGGCCTGCGAATCCTGAAGATATCAGGGGCCTTCGCGGTATATGCAGATTGCAAATAGCCTCAGTGCTGCTGAACGCGAACGTTGCGATACCAATCCTTAAACAGGGCACCATAATCGTTGGATGGTCAGATGTCGTATTCACCCGGGACCTCCGACCCACGAGATGCTACAGGTGTGCGGCTTTGCTTAACGGGCATCGATCAGCAACCTGCAAGGACACTGACAGGGCAGACTGCTGTCTTAGATGCGTGGGCGTGGGCACAAGGCAAAGGGGTGCGTTGCTGCGCAAAATATATACCTGATCTGCAGCAGCGAGAAGGGTGGACGAAACGCGGCAGGAGGGTAGCTTTGCGTGCCCGACTTACAGAGCGACACTAAAAGATGCCAAGAGCCACATGCACGCTCATATTGGCGTAGTACGGCATGTCAATCATTGCGCAGCAACTCAGAGCATACTGGCGAACTGCGGTGTATCACTCCTAAGCGAACCACCGCGATACCATTTGGTGGACGAAAATCGTCCCGCGATCCTTGACCTTGAGGCGGAAGCAGCATCAAATGCTGCGAAACCTATACAAGTCGGGCTGGCTGCTGCGGGGTGTATAAGCATGCGAAGTTAAAACACGTGCACATGTACAGCTGCTATACGCTCCGCCGGTAAACGCAGTTCGAGAACTTCTGGAGGCGCTTTCCATTGGACCATGCACGAGAAGGGCGAAGCCCGAAGGTCGTACCGGCGACACAATGCTGGACAGTGGAATGGGGCGGCATCCAGCACCAGAAGACGGAAGCTGTGATTGACGCCGGCTGGACTCATACTGGGCGATGATGGACGGAAAGGCGACGTTTGCTAACGATACGTCCTTTATTGACGACCGCTTTGTCGCGGGCTGGTAGACAACAACAACTGGATGGTCCATGACGTCATGACGTAGCGACCATGCCCTGATGCCTTGCTTCTCCCCGGAGGTGTATGCAGCGAACAGCCGGAAGCGGGACCTGGAGGAAGATCGATGAAATTACATGCTGGCCTATCAGATCAATTCGCAAAAATCCCAGACGCAAGAGTATGGCGGCAGGCCTCATGCTGGAAGAATGTCTGGGCGCAATCTGCCAGGAAAAAAAATAAGGCTGGCTGCAAACCACCCGTTTACTGGTGGAACGCCAACTACGGTGCGGAGTTGCCTCGGGAGAACGGCACGAGCCAGAGGCGGTACCCACCACGCGGAACTCTTGGGGAGGCTTTCCAGGAAACGGCACTTAGAGTTCCAAGCACGGCATCGCGCGGCTGCAGGGACGCGGTGGGCAGGCACAGGATGGCGTGGGCAATATCTGGAGACGCACTCGCCTACAAGCGCAGCGGAAGGCCCCACAGGAGGAGAGCAGCCAGCCCATCCGACCCGACAACAACATACTGGGGCTGTTTAAGCAGACCACTATGGAGGCCGGTAGCCCTGCCCAGATTTGCCGTGCGTCGGGGCAAGTCGTCGAGGCAGCGCTGACGATGTGGCAATCACAGCCGGCGGAGCTAGCAGCAATAGCGTACAAGACCGAAGCAGTCCTACTAAGCAGCAGGAAAAAGATGGAGAACATGCTGGTCTCCGTCGAAGTCAAGGGAGGACTCTGCGAGAGTCCCCTAAAGTACCTGGGGGTGAATCGCAGACTATGGTTCAGGAGACCACCAGTACACGCCAGCAGAGAGCCAGCAGTCACATCCTCTTCGTTGGCGGGAGGCTTATGCCCCGTCAGGCCCAGGTACCGGCGAAACTTGCGCGCTGGTATGCAGTAGCAAAGAGCTTCGCTGCTATACGCTGCACCAGTCTGAACGAAATGCCACTTGCAGGGGTCTCGCCACCTGAAAGGAGCTGATTGCTACCAATGGCCCTCAGGCTCATTGTAGGGATTCAGGTTCATATCCAGACGCGGCGCGCTGGCGCTGACAGGCCGATTGATCTGGAGATCAGGCTCTCAAGCGCTTATGCGGGTGGCTTCCAGGCAAGAGGC'..b'TATTTGGAAATTAAAGTCAACGCCCTGAAATCTGCGCAAAATAACTTTTACGTGGGATAACTGCCCAGAGTGTCATTTAATGGATCAGCAATCCCACTAGAAATTATCGATCGCAATGGCG\n+>88a5ba1b-a388-48d1-964c-71f836904291\n+TTGTACTTCGTTCAGTTACGTATTGCTGTGGAAATCTTTTAAGTCTTCTGACGTTGTTATTGTATTTACCAAATTTAAGGCTAAAGTTATTTTCGCTGTGTTCTTGGTCTGTCTATATATTTTTAATGTTTTGCTATTTCTTCTTTAACATAGGAGTTCTAAGTCTTTATGGATACTTGCATTTGAAATATAAAATGGGCAATTAACAATTTGTCTTAATATTTTTTGATTGGTAGCATTATGAATCTCAATATTTGAGTTGCTGGCAGTACCCAAAGCTGTATGTCCATAAGTCATGGGCTTTAGTATAGCTTTGTATAAACCGGACTTTATTTTGAGTAGTTTGCAGATTTTCAGCCAAACAACCAGGTCATCTCAAACTTTTGATTTAGTTGCTGGCGCTTTGCTTTTATGTTTATGTCTTCCCACGTTAGTCTACGATCGATACTTTGTGGGATTGCTGATCCCTCTTCACTTAGCTAAAGTTATTTGCGCAGATTTCAGGGCGATTGACTTTAATTTTCAAATAAGAAACCAACTTTCAATATAAAAGGCGTAGCTCTGCTTGCAGGAGTGAGAACTTCCCTCTTTAGATGAGCTTGTAATAATATAGCTGTATCATTTGTTACAAGGCAAATTATTTATTACCAGCATATCTGCCACGTTACAGTGTATCAAGACAGTTACTAAGACTCTTCCTTGTGGGACTCCAGCTTTATAAAGTGCAAGGGCAGTAATTCATTTTTTTGTTGCAAATAAAATTGTCTATTGGTTAAAGTATGACTTTAATATTATAAAATATGGTTTTATATGGAAATTATGGTTTCGATCAAACGCTTGTTAAACGTCAAAAGAAATTTAGCAATTATATTTTTGCTCTCAAATGTGACGGAAATTTCATTTTAATCCTGTGACATTGCTCAGAGGTTCCGTGGCCCTCTTCAATCCAAACTGATTGTTTGGTGCATGATAACGAATTCTTCAAGATTGACAACATTCTCTTTAAAATTATTTTTTAAATACTTTAGAAAATATTGACAACAAACTAATGGGACGGTACAATGTCACTTCATTTTCTGTTTGGTTTAAGGATTCCTAATTTCTGCACATTTCCATTGGCTTGGGAAGTGGTCAACTCTAACCATATTTTTTTTTCAAGGCTATGCCATCTTTTACATCCCCAATCTGGAACCTTTTACTTTTAGCCATTTTACAGTGACATTAATGCATTTACAATGCTATAATCAAAAATATTGAACAAATTGTCACTCATTTTGCATATTTCAAATGCAAGTATCTAAGACTTAGGAATCCCTTATGTTAAAGAAGAAAATGGCAAAACATATTGAAAATATAGACAGACCAAGAGTACATGAAAATAGCAGTTCAGTAAATAATAACAACAAATCGAAAGATAAAAATTCTGTGTATGTTG\n+>5f3b0d4d-e80b-4ec9-bc9f-8f642acef345\n+TTGTGTACTTCGTTCAGTTACGTATTGCTAAATGAAGTGACATTGTACCGTCCCGATAGTTTGTTGTCAGTACTTTTCCTAAAGTATTTAAAAATAATTTTTAAAGAGAATGTTGTCAATCTTGGAGGAAGAAATTCGCTATCATACCCAAACACCAGTTTGGATTCGGGAAAGAAGACCACGGAACCCCTGAGCAATGTCACAGGATTAAAAAATGAAATTTCGTCAGCATTTGAGAGCAAAAATACTGCATAATTTCTTGACGTTCTAACAAGCGTTGATCGAGAGTCTGGCGTGGCTTATCATATAAAACCATATTTACATATTATTAAGTCATACTTAACCAATAGACAATTTATTTGCAACAAAAAAATGAATACTCGCCCTTGCACTTTATAAAAGCTGGAATTCCCACAAGGAAGAGTCTTAGTAACTGTCTTATACCCTGTAACGGCGAATATGCCGGTATTAAATACTACTACCTGTAACAAATGATACAGCTATATTAGCTAAGCTCATCTAAAGAGAGGAAGCCTCACAGGCAACTCCTGCAAGCAAGAGCTACGCCTTATTGAAAGCTGGTTTCTTATTTGGAAAATTAAAGTCAACGCCACAGAAATCTGCGCAAATAACTTTTGCATTAAGAGGTAACTTTGCCAGAAGTGTCATTTAATGGATCAGCAATCCCACAAGTATCGATCACCGAACTAACGTGGAAACACATAAACATAAAAGCAAAGCGCCAGCAACTAAATCAAAAAAGTTTGAAGATGACCTGGTTTGCTTGGCCGAAAATCTGCAACCACTCTGGAAAATAAAGTCCGTTTATACAAAGCTATACTAAAGCCCATGTGGACTTATGACATACAGCTTTGGGGTACTATAACAATAACTCAAATATTGAGAGATTCTACAATGCTACCAATCAAAAATATTAAGACAAATTGTTAATGCTCCATTTTATATTTCAAATGCAAAGAATATCTATAAAGAGACTTAGGAATCCCTTATGTTAAGAAATAGCAAAACATATTAAAATATGAACCAGACCAAGAACATGTGAAAATAACTTGTATGAAATTTGGTAAATAATAATAACAACGTCGAGAGACTTAAAGATTTCACGTTAACTGAATCTCCCCGACAAAGTTTTAAGTATTAAAAACATGTTATGGTAGGGTATGTAGTAGGGATTAATGGATAACTACTGCCTCTGGTAATTTAAAGATTAATTATAAGGGTTACTTGTCATACTTTTTAAAGACAGATTGTAAATAAAAGAGAAAAAAAATAGTCTAATATTTGAAATTTATTTTGTGATATTATGATTCGGCTATTACTATTTATAGCTATATTTAAATAATAATAACATTAAAGACAATGCAAAACAAATTTCTCGCATGGTGCCAATTGATTAAAAATAATATAGATTTAAAGTCTAAGAACTTCTAAGGTGAAGGGCATATTTTGTAGGTACAATGCAAAAAATAATAATTCTGTACCATTACTCATGCATGCTGCTTCAGTTTCGGCTAAAAGAAATGAAAAGGACATGGCAGTTGTATTAACAGCAGCTGGTAACAACGTATATCAATAATATAAAGAAAAATGTTCTGTTCTGAGCCCCACACAAATGTCCGTCGACAATGCATTAGCCTTTTATATTTGAAAACAGTTTACAAAAGCAATACATCAATTTAAAACGGAATACAAAGTTTGATACCCATCATCCTGATGTTCTTAATGCTAAACTAAAGCTTAGTTGAGCTACAGCAACAAACCACACAACTTCGCCCGGATTCTTGAAATGCAGTGTGAAACTTTTCAAAGCAAATACCAATTCGATAGAATGCCAATTAATATTTAGCTATGGATATGATGGATCAACTGGTCAGGTATTTATAAAGCAACGTTATGAAATCGGTGCTGTATGTGGTAGGCTGCTCCTTCTACCCTTTCCCTTTACTCTTTTGCATACATTCTAGTCATACATACCCTAGTATACATAGCCAATCTAGTCATAGCTTATACATTCATACACCCATCCTTACTATATACATACATACAAATATTATCGGCTTATCGACTGATCGACTCGCCACTCTGCGAAGCCGCCGGCAGTCGATCGCTGTTGAATAAGCTGAAGTACAGATCGAAATAAAGTAATTGAAATAGTATTCGAATATTAACTTCTGTAAACGGCGGCTAAAATCTCCAGAAGTGGGATTAATAATCCAAAATGGACGGTATTAAAATCATCCCCTTAACATTGACTTTTTTTTCGCTCCTACAAAGATTGGTGGTTGAAAGAAAGAAGATGATGATGATGCGGTGGGTCAGTCACATCTGTGTGGCTGCAC\n' |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 test-data/result1_assembly_graph.dot --- a/test-data/result1_assembly_graph.dot Fri Sep 28 19:18:54 2018 -0400 +++ b/test-data/result1_assembly_graph.dot Thu Nov 29 04:34:34 2018 -0500 |
| [ |
| @@ -1,10 +0,0 @@ -digraph { -nodesep = 0.5; -node [shape = circle, label = "", height = 0.3]; -"0" [style = "filled", fillcolor = "grey"]; -"1" [style = "filled", fillcolor = "grey"]; -"2" [style = "filled", fillcolor = "grey"]; -"3" [style = "filled", fillcolor = "grey"]; -"3" -> "1" [label = "id 1\l32k 2x", color = "black"] ; -"0" -> "2" [label = "id -1\l32k 2x", color = "black"] ; -} |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 test-data/result1_assembly_info.txt --- a/test-data/result1_assembly_info.txt Fri Sep 28 19:18:54 2018 -0400 +++ b/test-data/result1_assembly_info.txt Thu Nov 29 04:34:34 2018 -0500 |
| b |
| @@ -1,2 +1,2 @@ seq_name length cov. circ. repeat mult. graph_path -contig_1 32752 1 - - 2 *,1,* +contig_1 39947 37 - + 29 *,1,* |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 test-data/result1_contigs.fasta --- a/test-data/result1_contigs.fasta Fri Sep 28 19:18:54 2018 -0400 +++ b/test-data/result1_contigs.fasta Thu Nov 29 04:34:34 2018 -0500 |
| b |
| b'@@ -1,547 +0,0 @@\n->contig_1\n-ATCGAAATCAGTCGATACCGCAGTGATATATCGTGAACATGGGTGCAACGCTGAGTTACA\n-GACATGCGCCTGGGGAACGGTAGGGAAATGAACCTGGCTGAAGGCGGCTGTGACGCAAAG\n-TAAATTTGTCGATGATAACCGGCCGGTGAAGGTGAATAATGACGCGTAATTTCGTCAATG\n-ATTTGTCGGCAGACGTGAATATACCAGGCAGCTATCTAAAGCCTCATTCAGCAGTACGTT\n-TAGCGACATCTCGCGGGTGGCGGTTATAGCCATGGTGCGGTGTGGAATCCCGCATGGAAC\n-GCGTGCGCTGGTGTGAACAATCGTGCGTTCTGACCATCAACGATAAACTGCGCTCGGCGC\n-AGTTTTCCGTTTACAGATGTTGAATAGGGAAAATCTGGCGGCAAAAAAAGCCCGACCAGT\n-TACGGCGGGAAAACCTCATCCTATGGGAGAACAATGCAATAATGAAAATTGCGGGGTTAT\n-CATCTCCCAGTCATATCCAATACTAACAATAAGTTACTCTACTCAACGCAGCATAAACAT\n-TTGTTTTGTGCGTGGGAACACGCCTTAAGGTGGTAAAGGGCGAGTGGAATAGCAAATGAG\n-CGAGTATCAGCAAGAATACTCCGCGCTTTACCACAACGTGATGAGAGCGCATGAAAACTG\n-CAAGCGCAGAGATAACTCGCCTGCTTGAGATAAATGCGTGCTTTTATCAGCGGCTTTATT\n-TTCAGCTCTTACTGCTTCCGTAGGTCACGTTCAGCTCAAGAATAGAGAAATATCGCCATC\n-TTTTGCATCAAGCTGTACGTCTGTACCGATCTCAGCATCAATTTGCTACGTATTTACAAA\n-TGACCTCAGAATATCCTTTACGCACTGCGGCAGATAATGCGGTTCTGCATCGCTGCGACG\n-GCGTCAGCAAGCAATAATCTGCAGCCGTTCTTTTAGCAATGTTGCTGTGTTTTTCTTGCG\n-CTGCGAGAGAAGAAATCGAGTAATGACCATAACTTATGCCTCTCGAACAAGCGTTGAGGA\n-AGCCTTTCTTCTCCTCTTCAATGACCAGCGGAAAAGGACGTGGTCTTCTCCCAACAGACG\n-TTCTACTACGGTATCTGCGTATGGCTTTACCGCAGCGCGTTAATGTCGAGAATGACCGGT\n-TTCACACCCTGGTTAGAGCGCGCGCAATACTGATTGATCCTCTGGGATGCACGCCGACGA\n-GTTCTGATGCGCAGGATCTCACAGCACATGCTTCGCATGCTCAGCATGTCACCTCGGCTT\n-ACGCGGCCTGCGGTTATAGCGCGTTAACAGCAGGTGCATCTTTAATAGGCTCTTCGCGCC\n-ATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCCTAAAATACGTCAGAGTCGCGTAC\n-TGAGGAGACTCCGGTGTTGGTGGTAATAATGCAGCTTCGTCTGCAAAATAGAGTGCGCAT\n-TAACGCACCGGTTTACAATCCTGCGGGGAGGCACAAACGATAAATTCAAAATCCAGCGCT\n-TTCAGATCATCAAGAACTTTGCGACCCTTCACGGCTGAGGTCATCTTTATCGCGTGTTTG\n-CGACTGCCGGCAGAATATAGAGATATTTTCAGTACGCTTTATCTTTAATTAACGTAACGC\n-CTGATTTAGCGTTGCATCGCCTGAATGACGTTGACGAAATCTAGGTAAACGACCCGGCGT\n-CACAACCCATTAATCAGGTCGAGAGTACGCAGGCCGATATCAAAATACTATCACGACAGT\n-TTTGCTTTCCTTCTGGGCCAAACCAGTGGCGATGCCGCGCTGGGAGGTGTCTTACCAAAC\n-ACTTTGCCCGATAAGTAACAACAATAATGCGTGCCATAAGAATTCCTTGTTAAAAAGCCG\n-ATCAATTTAACGGTTGTAACGGTCAATAAGCGTTTTCGACTAACTGCAGTCGCGCCGCTT\n-TGCCATAAAATTCTGCTGCGGATTTGATCACTCAGCCAGTATTCACCTGCGCATGGACAC\n-CAGTTCCGCCATGCAGGTTCGTACAAAATATTTGCGTTTCCCGGTCACGCACTTGCCCCT\n-GCCAGCGCACGACCGCGCATTCATGCCATATGACATGAATGTTCCCATCGGCATCAAGTT\n-CGGCCCCAGCGCCTAACCGTGCTTGTAACAATCAGATCACATTGTGCCGAGCATTAATAC\n-GCTGCACCGGACGCACCGCGGGTCGTATCTATTAAACGCGTTTTTGTGACCGCGTTGTAT\n-TTTTGCGCTGCGGCAGCCTGCGGTGTGTTGGCGCTGGCAACGTGGCGCTTTTTCCCCTTT\n-CCTTCCGTCAGGCATAGGCAGCCCATCTTTTCAATTTCGCTTTAAGTTGCGCATCTTTGC\n-AGCCACTACGCCAATAACCGCGGCAACGCGTTGCCGAAACCGCCTGTATGCATCGCTGAC\n-AGGTTTACCGGTCTTCCAGTGCCTGACGTTGAGTACAACGGGCATGTTTTAAAAATGGCG\n-GGGCCTGAGCGATTTGTCTTCCAGCGCCTGATGGACTAACCTTAGGTTCTGCCTCATGCA\n-GATCGAAAAGCCCACAGATAAAGGGAAGCTACTGCCTTTTTCAAGCTGCGATTGGCGTGT\n-TTGACATCCTGGCCTTATCGCAATTAGCTATTAATCATCGCCACGCGCGCGATGATGTGC\n-CGACGACTATATAGGCATGTTATAGTCTGGATTATTTTGCAGGCAAGTCACCCTCCCATT\n-TATTCAGAGTAAAAGTCGTATCTGTGATAAATGGCGCTGATTCATAGCTTAAAAAATCCC\n-TTGTCAATCAACCCATTGCCGTCGTACCGGTTTGATTGTTCTTATTTACGCTTCCTTTTT\n-CCGCACCCTAATCGTGCACAGCATCTCCAGACCTGTTTAAATATCCAGTATGGAGGGGCA\n-AGTGTTATCACCACGCCAGCGCTTTCTTACTTTCCATTTTTTGCGCATGCATTAAAGAAC\n-ACGATCGCTTATCTTAATATCCGCCACAGAATTGCTCTATCATAGCAAACCGCAGAAGAC\n-GTCTGATACTTCGGTCAGCGTCATCGTAACTCGTCAGGTCAGCGGGTTTTGATTACGCGA\n-TTGATGATGACATGACGCATAAGTGTCTGTACGCGTTGGCATTATCAGGATGTGCTATGA\n-ATATATGATGCGTATTTTTATATATCGGTATTGTCAGGTGACACTGTGGGATGCCATGTT\n-CTCATCAATGGCGTCTGGGAAATGACGCTGGCGGACTTCAATCTCGGCGTGCGGCGTTGT\n-TTGCGACGCCGTATATTTGTGTGAACTCAGTATGGGCATTGCCCAGAGTTAACAAGCGAA\n-ATATCTCGGCGAGAAAAGCCGCTGAAAACCTTACAATCATACCAGGCTACGATCCCAGCG\n-AATTTACATCGCTACCGGTGTATTTGCGATGTTAAAGAAAAATTATGTCGTGATGATCGT\n-TATTTTGGGTGTGGATGGTAGCGGAGTGGAAAAATCAATCAAACCACCACAAAGATGTTA\n-TTTATGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTTATTCGTCATTAACCTCTTG\n-AGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGAGAGTCCCGTCGTTGACATTT\n-ACTTAATTTTGAATATCGACGTTTATATTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGG\n-TTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCCGTGACTA\n-TCGAGTTCTGGGGAATATCTGGATAAATCAACTGGAATCATCGATTCTGGCCCGAAGAGG\n-TAAGTATCAGCGCCTTCATTAGAGATACTCTCACATGCACTTTCTGACCTTTTTGGCAAG\n-A'..b'AGAAGCAACCTTTGAAAGCCAGCACCAGTTTATTATGC\n-GGTGATAACCCTTAAACCATAATAGAACGCAGGAACCAGCTTTATTTTGTGTGCTCCCAT\n-CCTGTGGAACGAGATCGGCAGTGATGACCAGTCAATTAGGAAAAGTCAAAGCCATACCTC\n-GCTCATTATGCCACAGGACGATCCGCAAACCCGCCGCTTGATTTCATTTTGTCGCCAGGC\n-GTCGCGCAGAGCCTTTCCTGTCCTGCTTTTGTGGAGAAGATGGCGTGGCAAGCACTGCCC\n-TAAGTCAGGCAATTCATAATGAAAGCGAAGCTTGCTGCAGAGGTCCTTATAATCCCGTCA\n-ATTGGAGTTATTATTGTGAGCTGCGCTGCGAATTAATTTATGTGGCGATCGCTACGGACA\n-ATGGAAAATGGCCGTCTTGAGTCGGCTGGAAACTGGCACCGGCGGCACGCTGTTCTTGAA\n-AAGATTGAATATCTGGCGTTGAGTTACAGTCTGCTTTGCTTCAGGTTATCAAGCAAGGGG\n-GTTATCACCGCGGACTGGTAATGCCGGCCGTTTTAATACCAATTGATGTCAAAGTGAATT\n-GCAACAACGAACCGCGGACCTCGCAATGCTGTGGCAACCAAAATCGTTTTAGTCGCCACC\n-TGTATTACGCGCTGCCATGCACTTTGAAATTACCATCCCGCCCTCTCGTATGCGGCGTGC\n-AGCATTTCCGTGCGCTGGTGGAATAACAAATACGCAGGCTTGAAAAACGCTTCTCTACGC\n-GGCTCTGAAAATGATGACGTGCCCTCGCCTCGCCTGGTTTCTTGGCATGGCCAGGCAACG\n-ATTTGAACTTTTACAGCTCATCGAGAATCTTGCTCTGAGTAGTGATAAACGGCGCAGTCC\n-CGTCAGTAATTTGCCTGGAAACATCTGTTTACCGCAGGCAGGCGTGACAGATGATGTCAG\n-CGCCACCCGCCCTTTCCACCAGTCTGTCATTTCGCGGAAGTTGAAAAAGAGGAATTATAA\n-CGCAGCCCAGGTACAGGCCGGTCGCATTCAGGAAAGTCGCTTATTGATCGCCCCGCCACT\n-ACGCTGTGGCGGAAAATGAAGGCAAACATGGCATTGATGCAGGGCAGTTAAAGCGCCGGG\n-TATTGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCCAC\n-TGCTAACAATTTTCAGCATCGTTTTAAGCTTGTCTATCCCGCCACTTTAAAAAGCTAAGC\n-GATATCCTCCGTTGACTGCTCTGATTCAAAGAGGTTACCTCGGTAATCCGCTTCGAGATA\n-GAAATGATGTGCTTGTTTGTTATACTGGCATGGACTCCCATCGCGTTATTCCAGCCCATT\n-ACCGAAAACCTGTACTTCTCCCGGGAGTTGTTCAAACAGATATTTCGGTATCCCCTGAAA\n-ACTCGCGTATAGCGCCAGTCTCACATAGACATTCAGCTGGCGTTGCCTGCGTATGTCATC\n-CCCAGTTATCATGCTGGCACGCCCCAGCCAGCGATTCGTTAGTGGATTCAGCATGTATAT\n-TTGAAGGCCATTACTCCCCAATCATCTCATTCTGCGCTGGCGTATGTAAGCTGGGTTTGC\n-GGCTCTAATAGAACCCATAACCAGGTAGGGACAGGTTTGACCTCTTGCCCGCTTCCAGGG\n-AGATGCTCATTTCCCATTCGCAGTGCCGTTGCGTTAACTCCGTTTGTTCTGACTGTCCAG\n-TACGTGGAAAAAACTATTTTTCTGCCGCGATGCTTTATAACGAGACGCTGTAAAAACCGT\n-TTTGTGCCATGTAAACTGGCGAACATTCCCCATGTATCTGAACGTGCGGTACGTCGCCTC\n-CGCTATGTCCGCGATGCATGTGTTGAGCCAAATATACAGACGACATACAAACGCATACAT\n-CAGAGAGACGTTATCCCCACCAAACTGTACCGCTGTAAACCACATGTCAAAGCCGCCCTC\n-AGTTTGCCACTGGCAAAGGAAGTCCAGGCTTCCCCATAAAGCGAACCAGATATTACGTCT\n-TTACTCGATTGCGCAGGTCACCCATCCGTGCATCAGCGTACGGTTTTCAACATAGTCAAT\n-AAGTAACCACATTGAGATAATTGCCGCCAGCATCTGCGTCGTGGTGAGCGTTTAGGCGTG\n-AGCGTTCAGGCCGTAGATCGGGCGTTGGCTATGGAGCTGAGCGGGAGCTGTGTGGTTTCA\n-GATTAGAGTCGGTTCCGAACTTTCCCGGCAAGCGTAAAGCTCCCAGTTAGTTCCATTTAC\n-GGGCACATCGTTACAAGATATCCCCCAACCAACCTGAGAAACGCGCTGAACGAGGCCGCC\n-CGTCAGTGGTTTTTACCACTGTCAAACTTTCATTTCCCGTTGTCGCCTCGCTGCCCTGGT\n-TTCGGATAGCAATACGTGATTACCAGCACTACTCCCGCTGATATTCAATTTAAATCCCCT\n-TTATTATTTAACGCCATTACCCTCGCCACACATCAGCACGCATAATAAATGGTATGTTAC\n-GCGCATTCTCTACGTTATGTGCAAGTCCGCAGTTGACCGTGGCTGCAAAATCGACAGTGA\n-ATGCTCAGCGCCAGCGTGTCGAGATTAGAATTACTTGTTAACGTTCCGACGCTGTTATTC\n-ACGCAACGTCCAGTTTCCCCATTGGAACATTATCGCTGAAGGGAGGAACCTGTCCAAAAC\n-CGACCCAGGGGGCATATCCAGATTGATTAGCCCACCTTTGGAAAGAACTGCTACCTTGAT\n-AAGCATACGACCGAGTCGTGAGCGCTGCGGCATAACCATCGTCATGGTGCGTTGCGATGC\n-ATCTGTCGGGTTACTCATATCAATGACCAGAATCGCTCGTGAGGTCGATCTGGCTGTGGT\n-CATGGCATAAATTTCCCCTGGCTCCTTGCCGCGCCGGTGATAGCCAACTGTCTCCGGTTA\n-TCTACGCCGCTGAGAGCCCACCAAACCCAGCGCCAGACTGCCATTACGATCAACTGAATA\n-TCGGTATTTTGCATTTTGACAACAGCGTTGCCGTCTGGCCAGGCACCATAAAGAAACCGC\n-CGAAAAGATCTGATTTCGTTCGCGCCTGCAGAAATGATTATCGCGTCTGAACCACTGGTG\n-ACGAGGCCACCGCCCTGCGCGAAGAAATATGCTATCTGCACCGATAGTGTTGTACCACCA\n-CGGAACTTCGACGCCATTGCCGCGGCTCCAGTTACATCAACAGTGAGTGCATTCGCGCCT\n-AAACTGGCCAAACTCCAGAGGCCGTAGCATTATCGCATTGGTTTAAGTACTGTTTGTTCC\n-GAGATCGACACAGATTTTTCTGTACGTTTTTCCCCATGCGCGTAGCCCTGGAAATCGATT\n-GTCAGTCTGTAGCCGTAAAACGCGCAGCACCAATTGTCGTTATTGCCGTGAACAACCGAT\n-ATAAACACCGTATTCCATCGTCGCGTGATTTTTACTTCCGCTTCCAAGAATCACACTGTT\n-GCCATAGTCATTGATGGTTAGCCTTATAACCGTTCGATTTTCAATGGTGAATGAAGTGGC\n-TGTTAGGTGAAAGCTATTTGCCCAATAATGATGCCGTCAATCGTTACTTCTTAATGTGCT\n-GGCTGTGCCTAAAGTCAGCATTGGTATAGTTCACCAATTAAAGTAATGCCGAGGCAGGAG\n-GTTGACCAACCAACAAATCTACTGTGAGTTCCGGTAAAGCTGTCAGGGAGTTGTTTTTGC\n-CCTGAATAATGAATTTTCCTTTTTGCATTAAATTTTTCCAAGAAAGCCCCCGTCGTTGAA\n-ACATTGACGTGAACCCCAATTTCAATTTTAACCCCCAAGGTTTTGATATTTTTGCCCCAG\n-GGGCCCCGTTTGGTTTCCTTGCGGGGGCCATTTCGTGGCGTGTTCGTGTGTG\n' |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 test-data/result1_scaffolds.fasta --- a/test-data/result1_scaffolds.fasta Fri Sep 28 19:18:54 2018 -0400 +++ b/test-data/result1_scaffolds.fasta Thu Nov 29 04:34:34 2018 -0500 |
| b |
| b'@@ -1,547 +1,667 @@\n >contig_1\n-ATCGAAATCAGTCGATACCGCAGTGATATATCGTGAACATGGGTGCAACGCTGAGTTACA\n-GACATGCGCCTGGGGAACGGTAGGGAAATGAACCTGGCTGAAGGCGGCTGTGACGCAAAG\n-TAAATTTGTCGATGATAACCGGCCGGTGAAGGTGAATAATGACGCGTAATTTCGTCAATG\n-ATTTGTCGGCAGACGTGAATATACCAGGCAGCTATCTAAAGCCTCATTCAGCAGTACGTT\n-TAGCGACATCTCGCGGGTGGCGGTTATAGCCATGGTGCGGTGTGGAATCCCGCATGGAAC\n-GCGTGCGCTGGTGTGAACAATCGTGCGTTCTGACCATCAACGATAAACTGCGCTCGGCGC\n-AGTTTTCCGTTTACAGATGTTGAATAGGGAAAATCTGGCGGCAAAAAAAGCCCGACCAGT\n-TACGGCGGGAAAACCTCATCCTATGGGAGAACAATGCAATAATGAAAATTGCGGGGTTAT\n-CATCTCCCAGTCATATCCAATACTAACAATAAGTTACTCTACTCAACGCAGCATAAACAT\n-TTGTTTTGTGCGTGGGAACACGCCTTAAGGTGGTAAAGGGCGAGTGGAATAGCAAATGAG\n-CGAGTATCAGCAAGAATACTCCGCGCTTTACCACAACGTGATGAGAGCGCATGAAAACTG\n-CAAGCGCAGAGATAACTCGCCTGCTTGAGATAAATGCGTGCTTTTATCAGCGGCTTTATT\n-TTCAGCTCTTACTGCTTCCGTAGGTCACGTTCAGCTCAAGAATAGAGAAATATCGCCATC\n-TTTTGCATCAAGCTGTACGTCTGTACCGATCTCAGCATCAATTTGCTACGTATTTACAAA\n-TGACCTCAGAATATCCTTTACGCACTGCGGCAGATAATGCGGTTCTGCATCGCTGCGACG\n-GCGTCAGCAAGCAATAATCTGCAGCCGTTCTTTTAGCAATGTTGCTGTGTTTTTCTTGCG\n-CTGCGAGAGAAGAAATCGAGTAATGACCATAACTTATGCCTCTCGAACAAGCGTTGAGGA\n-AGCCTTTCTTCTCCTCTTCAATGACCAGCGGAAAAGGACGTGGTCTTCTCCCAACAGACG\n-TTCTACTACGGTATCTGCGTATGGCTTTACCGCAGCGCGTTAATGTCGAGAATGACCGGT\n-TTCACACCCTGGTTAGAGCGCGCGCAATACTGATTGATCCTCTGGGATGCACGCCGACGA\n-GTTCTGATGCGCAGGATCTCACAGCACATGCTTCGCATGCTCAGCATGTCACCTCGGCTT\n-ACGCGGCCTGCGGTTATAGCGCGTTAACAGCAGGTGCATCTTTAATAGGCTCTTCGCGCC\n-ATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCCTAAAATACGTCAGAGTCGCGTAC\n-TGAGGAGACTCCGGTGTTGGTGGTAATAATGCAGCTTCGTCTGCAAAATAGAGTGCGCAT\n-TAACGCACCGGTTTACAATCCTGCGGGGAGGCACAAACGATAAATTCAAAATCCAGCGCT\n-TTCAGATCATCAAGAACTTTGCGACCCTTCACGGCTGAGGTCATCTTTATCGCGTGTTTG\n-CGACTGCCGGCAGAATATAGAGATATTTTCAGTACGCTTTATCTTTAATTAACGTAACGC\n-CTGATTTAGCGTTGCATCGCCTGAATGACGTTGACGAAATCTAGGTAAACGACCCGGCGT\n-CACAACCCATTAATCAGGTCGAGAGTACGCAGGCCGATATCAAAATACTATCACGACAGT\n-TTTGCTTTCCTTCTGGGCCAAACCAGTGGCGATGCCGCGCTGGGAGGTGTCTTACCAAAC\n-ACTTTGCCCGATAAGTAACAACAATAATGCGTGCCATAAGAATTCCTTGTTAAAAAGCCG\n-ATCAATTTAACGGTTGTAACGGTCAATAAGCGTTTTCGACTAACTGCAGTCGCGCCGCTT\n-TGCCATAAAATTCTGCTGCGGATTTGATCACTCAGCCAGTATTCACCTGCGCATGGACAC\n-CAGTTCCGCCATGCAGGTTCGTACAAAATATTTGCGTTTCCCGGTCACGCACTTGCCCCT\n-GCCAGCGCACGACCGCGCATTCATGCCATATGACATGAATGTTCCCATCGGCATCAAGTT\n-CGGCCCCAGCGCCTAACCGTGCTTGTAACAATCAGATCACATTGTGCCGAGCATTAATAC\n-GCTGCACCGGACGCACCGCGGGTCGTATCTATTAAACGCGTTTTTGTGACCGCGTTGTAT\n-TTTTGCGCTGCGGCAGCCTGCGGTGTGTTGGCGCTGGCAACGTGGCGCTTTTTCCCCTTT\n-CCTTCCGTCAGGCATAGGCAGCCCATCTTTTCAATTTCGCTTTAAGTTGCGCATCTTTGC\n-AGCCACTACGCCAATAACCGCGGCAACGCGTTGCCGAAACCGCCTGTATGCATCGCTGAC\n-AGGTTTACCGGTCTTCCAGTGCCTGACGTTGAGTACAACGGGCATGTTTTAAAAATGGCG\n-GGGCCTGAGCGATTTGTCTTCCAGCGCCTGATGGACTAACCTTAGGTTCTGCCTCATGCA\n-GATCGAAAAGCCCACAGATAAAGGGAAGCTACTGCCTTTTTCAAGCTGCGATTGGCGTGT\n-TTGACATCCTGGCCTTATCGCAATTAGCTATTAATCATCGCCACGCGCGCGATGATGTGC\n-CGACGACTATATAGGCATGTTATAGTCTGGATTATTTTGCAGGCAAGTCACCCTCCCATT\n-TATTCAGAGTAAAAGTCGTATCTGTGATAAATGGCGCTGATTCATAGCTTAAAAAATCCC\n-TTGTCAATCAACCCATTGCCGTCGTACCGGTTTGATTGTTCTTATTTACGCTTCCTTTTT\n-CCGCACCCTAATCGTGCACAGCATCTCCAGACCTGTTTAAATATCCAGTATGGAGGGGCA\n-AGTGTTATCACCACGCCAGCGCTTTCTTACTTTCCATTTTTTGCGCATGCATTAAAGAAC\n-ACGATCGCTTATCTTAATATCCGCCACAGAATTGCTCTATCATAGCAAACCGCAGAAGAC\n-GTCTGATACTTCGGTCAGCGTCATCGTAACTCGTCAGGTCAGCGGGTTTTGATTACGCGA\n-TTGATGATGACATGACGCATAAGTGTCTGTACGCGTTGGCATTATCAGGATGTGCTATGA\n-ATATATGATGCGTATTTTTATATATCGGTATTGTCAGGTGACACTGTGGGATGCCATGTT\n-CTCATCAATGGCGTCTGGGAAATGACGCTGGCGGACTTCAATCTCGGCGTGCGGCGTTGT\n-TTGCGACGCCGTATATTTGTGTGAACTCAGTATGGGCATTGCCCAGAGTTAACAAGCGAA\n-ATATCTCGGCGAGAAAAGCCGCTGAAAACCTTACAATCATACCAGGCTACGATCCCAGCG\n-AATTTACATCGCTACCGGTGTATTTGCGATGTTAAAGAAAAATTATGTCGTGATGATCGT\n-TATTTTGGGTGTGGATGGTAGCGGAGTGGAAAAATCAATCAAACCACCACAAAGATGTTA\n-TTTATGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTTATTCGTCATTAACCTCTTG\n-AGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGAGAGTCCCGTCGTTGACATTT\n-ACTTAATTTTGAATATCGACGTTTATATTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGG\n-TTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCCGTGACTA\n-TCGAGTTCTGGGGAATATCTGGATAAATCAACTGGAATCATCGATTCTGGCCCGAAGAGG\n-TAAGTATCAGCGCCTTCATTAGAGATACTCTCACATGCACTTTCTGACCTTTTTGGCAAG\n'..b'CGGTGATCTTGGCTTTCATCATGTCCAGGATGCCCTGCAGGTC\n+CTCATTCTGGAGCGTCGTGGTCAGTTCTGGCGAGCGATGCGGCGATCCTGATGGGACTTC\n+GCTCCCGCCCTTTGGGCCGGCACGCTGATGAAATCCATTGTCTTCAGGCTTGTGGCTGTC\n+GTGGAGACTGTAGTGGCCAGAGTCTCCACCTCCACAGCTGCACTGCAGTCGCTAGCTTTC\n+GGCGGCGGGGGGGCCTGCTTGCTCACCTCCCACTCCCTGGATTGGGGTTCCGACTCCTCT\n+TATGGGATCTCGATAGCCTACCACTCCTCCTAAACGGGTCGTTGGGGTCGGGGCACTGCC\n+CCCTGTGCTGTCCATCAGATATAAAGGGGGACTTTGGCTTGTTGGTCCCCAGCGCTCCGT\n+GGGAAATAGAACTAGCTTCAGTTCTTAGGTTATATTTAAAATTTTTGTTCAACTTAATTA\n+GTTCAAATTTGAATTTGAATTCGAATTTCGCGCCCAACGAGCGCGCGGCCGAATGACGAT\n+CGCACCGCTGATCTGGCAACGCCAGTCTTACCAGCTCGTCGACTGCGAAAGGTTGGCAAT\n+GCTATCAGCTGTATTGTCTGATGCAGCTGATCTGATTTATTACCAGTTTACTGGATCACT\n+CGTGAATTCGGAACGACACCGTGACGCTCAGAACGCGGCGCAAACCCCAGAGTGGATTTG\n+CGGGTTTATGTTGCAGTTTACGGCTGACCGGACTCGTATATGACGAAATTCGCGCAGCGC\n+AGCAAAAGACGTGCGAAATACGCGGGAACTCGATTCACTATCATGCCATAATGTGTGTTG\n+GTATTAGTGTGTGTGTGGAGTGAAGTAAGTCTCCAAAGTGTGTTTGATTGCGGGTAGACT\n+GGGTTCTACGCATTATTGCAACGTTCGTTCTGCACATTAAGTTTTGATCGCCGAAGAAGA\n+CAGACATGCCTCGCTCCCGAATTAAACGCGTCAGAAAACGTTACGACGACGGGTGAGAGT\n+GATGCTGAGTATAAAAGTGATTCAGATCCCACATACTTAATGCAAATAAGTTTATTTTCA\n+ACTTTTTCTATTGTAAAATGATATTTTATGTCTATGTGCTTAATTCTCTTGTGGCAAGTT\n+GGGTTATTTGCAATACTAATGCAACCTGGACCTTTTAATTCTAGTTTAATTTCTACCAAT\n+AAAAACTTGAGCCATAAGGCTTCTCTAAAACCTTCAAATAAGGCCATGTAATCTGTCTTC\n+GGTGGATGAAGCTGCAACTGATTTTTGCTTCATTGTGTTCCATGAAATTAAACAACTTTC\n+AAACAGTTTAAATAAATATCCAGTAGTACTTCGTCTGTCTGTCTCATTTCCTGCCCAATC\n+AGAATCAGCATGTCCAATAAGAATAATACTAAACTGTACACTTTTTCAATCTCAAATCAA\n+CAGTTCCTTTTAAATGCCTTAAAACTCTTTTAAGGCATAGCCATAATTCCTTATTGTTGT\n+TATTCGAATATCGACTTAAAATACTTATTGATCAAGTTTCTACATGGTGCCTCACATGAT\n+TCTACAGATTGTAGAGCCTCATAGTTTAGTTTGCTTGGAAGAGGTGTACTAACTGCATTA\n+CAGTCTTCCATATTAAACTTTTCAACACATTCTTTATATATGCAGATTAACTGAGACATA\n+TCTGACTTTTATTTCTATCAATTTTAATTCCGATAAAATATCGAACTTCCTTCAAATAAG\n+TCATTTTAAATTTATTTAGAAGGTATGATTTAAATTTAGACCTAGTTTCGGATTTACTAG\n+TGGCAATTATTACATCGTCCACATATAACAAAATATAGATATTATCTAAGAATTTTCCTT\n+TATCTAATATAAATTAGATTTTCAAATACAACATCTTTTCGCACATTTTCAAAACTTCAA\n+ACCAGCATCTTGCAGCTTGTTTACTGCATATTTTGCTTTATTAAGCTTTGCATTCTGCAT\n+TCTCATCGCAATATGGCAACCCTTTTGGAACCTTCATGTAGATTTCATCTTGCTCCAAGA\n+ATGCTGTTCTCACATCCATACGATGGACTTGTAAATTTTATTGATTTGAAAGAGCCAAAA\n+AACCGAAACTGGAAATTCGTGCAGCTGGTGCAAATGTCTCATCATAATCAGTCACATATT\n+CTTGTGTAAACCTCGTGCTACTAGCCGTGCTTTATGCTACTAAGTTTCCAAACTCATCTT\n+GTTAGTGCTACTAAAAACCCATTTACAATCTACTATGCTTTTATTATTAGGCTTCTGCAC\n+CAAACTCCACGTTTTATTTTCTGAATGTGAACCAAGTTCATCTTGTATAGCTTTTCCCAA\n+AAGATCTGTCATCCACGAAATTCAATTTCATCAAATCTATTGGGAATATCAATATCTATC\n+GATAGTTTAGGTTTATCTTTGTCCAAGTTACGGGGTTGGACTGTCACCGCTCTCCGCTCC\n+CTTTACGCTCTCCGCTCTTCACCACAGAGTCTCCAAGGAGTCTCCGCTGCGCTTGGAAGA\n+GCCTAACTAGATAGAATAAGCACCAGTGTCAAAACTCATTTCGCAGAATAAATATACGCC\n+CGGTCGCGCTCAATTACGAAAGTCTAGTGTTCGCTTTTCTTCGAGATTCTTTTCAGCATA\n+TTTGGAAATTCCAGGACAGCACCCTACAACCCATCATTTTTTATTTCTTTCACTGCGTCC\n+TGATTTCTTACTCACTTTTGCTATCATTTTATTTCATCACCAGTTTCTTTAACTGGATCG\n+GCATTCTTTAGACATGTGGAATTTTACTATGTTGTACTTTTTCTAGAATCAACAGATTCA\n+TCATTTTCCACCATTGGAAAATCGAGGACTCTACATTATCTTTATTAAAAAGAATCATAA\n+ATACTTTTATGTTGAACCTTCGAGTCTTCTTCATGTTTTAATTCGTTTGTCATCTCGATC\n+ACCGAATCGTATCTCGCTTTCAAGGCCTCATCTCTTTTGAGACGCTGCTCATTTCTTAAG\n+AACTGAGCCAACTGCGAAACAGACCTAGAATGCCTAGCCCGGAACCGATATGTTCGGGGT\n+CGCTTGAAAAGGCAGAGTAACGACATATTTGCTGCACTCGTTTCTCGTGAGTCGTTGAGA\n+GAATTCTTCTCGCACGAGATCGGATTCTTTTGCAGCTTTGTTGGTATATGTCCTCGCAGA\n+ACTGCTGAGGAGTTTGTCCAGTGAATTATCGTACGCGTGGGAGATCTGTGCCGAAAGAGA\n+AATTCTACTTGGGCTGGGCTGACACTGGCCCAGTTAGTACCCAGCGAAAGTATGGTCTCT\n+TGCCCGCCCCAAGAGAGAGCGCAGATGTTGGTTTTGTAACCCTCCAGAAGCACCGAAGAG\n+GAGGATTGCCAAATCCATGTGCGAAGAATTTCATTGGGCCCTGAAGCGAGTGCGGCAAAT\n+ATGTCGTTACTCTGCGCTTTTCGCGACCCAGTGCCTATCGGTTCCGGGCTGGGGCATTCT\n+AGGTGCTGTTTGGCTCAGTTCTTGAGCTGGCATTAAAAGATGGGCTGTGAAAGCGAGATA\n+CGATTCGGTGATCAGATGACGGCGAATTAAAACGCAGAAGAAGACTCGAAGGTTCAACAT\n+GAAATATTTTATGATTCTTTTAATAAAAGATAATGTAGAGTCGATTTTCCAATGGTGGAA\n+AATGATGAATCTGTTGATTCTAGAAAAATGTACAACATGATGAAATTCCACATGTCTAAA\n+GAATGCCGATCCAGTTAAAGAGCTGGTGATGAAATAAATGATAGCAGAAAGTGAAGTAGA\n+AATCAGACGCAGTGAAAGAAATAAAAAAATGATGGGTTGTAGGGAATCCTGGAATTTTCA\n+AATATGCTGAAAAGAAACTCTCGAAGAAGAACACTAGACTTTTCACC\n' |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 test-data/result2_assembly_graph.dot --- a/test-data/result2_assembly_graph.dot Fri Sep 28 19:18:54 2018 -0400 +++ b/test-data/result2_assembly_graph.dot Thu Nov 29 04:34:34 2018 -0500 |
| [ |
| @@ -1,10 +0,0 @@ -digraph { -nodesep = 0.5; -node [shape = circle, label = "", height = 0.3]; -"0" [style = "filled", fillcolor = "grey"]; -"1" [style = "filled", fillcolor = "grey"]; -"2" [style = "filled", fillcolor = "grey"]; -"3" [style = "filled", fillcolor = "grey"]; -"3" -> "1" [label = "id 1\l21k 2x", color = "black"] ; -"0" -> "2" [label = "id -1\l21k 2x", color = "black"] ; -} |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 test-data/result2_assembly_info.txt --- a/test-data/result2_assembly_info.txt Fri Sep 28 19:18:54 2018 -0400 +++ b/test-data/result2_assembly_info.txt Thu Nov 29 04:34:34 2018 -0500 |
| b |
| @@ -1,2 +1,2 @@ seq_name length cov. circ. repeat mult. graph_path -contig_1 22450 2 - - 2 *,1,* +contig_1 40389 36 - + 29 *,1,* |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 test-data/result2_contigs.fasta --- a/test-data/result2_contigs.fasta Fri Sep 28 19:18:54 2018 -0400 +++ b/test-data/result2_contigs.fasta Thu Nov 29 04:34:34 2018 -0500 |
| b |
| b'@@ -1,376 +0,0 @@\n->contig_1\n-AAGAAACATAAACAGAACGTCAGTAATCCAGCAAACTGACGGTTACGAAATAGGCGCGGC\n-GACAATAATCTCGTTCTTTCACCACCTCCGGCGTCAGATTCGGATTCACAGCACATCGGG\n-ACCAACGCGTTGGTGCAAACGGATGCGTGGTCCAGTTGTTCCGGGAGTCAACATCTCTAC\n-AGGCTTGAGGACCGCAAATCTCATGGAGCCCCAGTATCGCAGTTTTGTTGCACTATCCCG\n-CGTGTTTCAGGCGAGTGTTCTACCTCGAGTAGCCCGTTACAGAAGTCAAATGCGGCTCTA\n-GCACGAGTCGTAAAGAGGTGGCACCCCGCTAGGAGGGGCTAAGCATTGGCTCAGGAAACT\n-GCTGTATTAAAGAATTCGGTTGTACGGTTCCGCAAGTGAGGTCGGCCTCTAGGTCAAAAG\n-CGTCCAGTAAAGCTAATATTGTCACCGATAAGGTTGATTAACTGCTCGAAGGAAATTTAA\n-AACCATTGAGGAGGATAAGAGCGATATCGCAGTGGACCCAATTAGTGGTTCATTCTATTG\n-CCAGCGACCCATGTATATTCGGAACGTGAGGGTGAAACGTGCCTCCATGTAGAGCTTCAG\n-AGCAGGCATTAGATGCTGGTACAGCCTTTTCGTCGTCATTAATCGGGGTAAGTTACTTAA\n-TGCGACAACAGGATGCGCTTTTCGGGGCAAAATTGAAGAGCGTAGTCATGCGGGCGAACG\n-CCAGTGCGTGCTCGCCAGTAGCGTCGCACTGCATTAAGAAGCCGTTTGCGCCAGCCGTTA\n-AAGAGCGTTTCTGGTTCTACGGTGATAATATGATTTCTGGTGATCCGTGTTGCACCGGAC\n-CCATAGTTCCAGCACTTTCTTCAGTTCTAGTGATAGCGCGCCTGATATGGCTTTCGGAGA\n-TACACCCCAACCCAACGCTTTCATGATAACCGCGATCGGGTGGGAGCCGTTAGACACCAC\n-CCGTTATCATAGGCCACTGGTCAGTTAATTAAATGCAGAGTGCCCCGGCAAACATTTCCT\n-CGCCCCGATAATCGCTCCTGGGAAGAATCATGCTTCCCTGGATGTACGAACGAGAATTGA\n-CCCGCGGCGCCCGCATGGGAGATCGTGCGATTCGTCTGCCAGTTGTGCTTCTTTCGCCGC\n-CTGGTTGTACAACATGCCGTGCGGTTTGACATGACGCATTACGCGCTATCCAGCGCACGG\n-GAAATTCCTTCAGGCGCCACCAATTTTAGATACAGCGTCTGGGCGTAAACGGGGTTTCTG\n-GCGGCATCCAGCTGACGCGCTGCGAAATAAAATTTTCCCCTGTCGGGAAAACTCGGGTGA\n-GCGCCAATCGCGACACCATTTTATTGCTTCCACGCACGCAGCCTGCATGATTTGCGCATC\n-GCCTGCATGAAATCCACAGGCAATATTGTGCAGAGGAAACCAGCGTTAATAGCTCTGCGT\n-TGCTGGCGCATCGCTTCGCCCAAGTTCGGCGTTCAGGTCAATTTTCATTGTGCAGCCGCC\n-ACGCTAATTGTTCAAAAGTAACTGTTGCTGATTTGCCGTGCTTTTTAGTGCCTCTTCCAG\n-TGAACACTGGACAAAATGAATCGGCTGACCGAGCGGCGAATTTGCGCCAGATGGTACATA\n-TCAGCCTCTCAATGATACAGGCAATACGCGGGTAACCACCGGTGGTCTTGCCGTCGTTCA\n-TCAACACAATACTGCTGCCCGTCCTCTTGGCACCTGCACCACGCCCGGTGACAAACCGTG\n-AGATAACAGTTCGCGATCGGTGGTGCGTTTTAAATGTCCCCTGTAAGCGATAGCCATGCG\n-GTTATTTGCGAGCCGGCTGCCAGGCGAACGCCAGAATGCATATCCTGCGAGGCGCGATTG\n-AACTCATGATATTCCGAGTGGCGGCAAGGCGCGAATTGCGGTTGCCCCACAGCAGCTGTT\n-TAACGCCCTGCGCTTCCATAGAATTGGTACGCTTCGATTTGCCAATCGGGAGTCGGTCAC\n-CATCCTTCAGTAAACGGCCTTCCCAGCCCGCCAATCCCCATTTGCAATCACTGCGCGGTG\n-CTGCATGAGCCCATTACCGGCGGAACATCAATACCACCCGCGACCGCCAGATAACTGCGC\n-ATGTAGCGTCTTCGTGGAGGCATCCGTCAGCGTTAAACGCTGGCCTGCTGTTTTCATCGG\n-CAATCGCCAGCCGGTCCAGACGCATTATCATCCAGCCGCGCTGTCGCAACCGGCACCCGT\n-CAGAGCCGAAACCACCCATCAGTTTCGAACCTAACAGTTAACTGACCGAGCGCTGATCTC\n-CATAGCGGGGGCATTGGCGTCATTACCACCAGTATAAGTGCAATGCGTAACGCGGGCATA\n-TCAGTGCGCCGCAGTGGCTGATATCCGACTGGCGAAACCGTGACGACCGCCATCCTGCAC\n-GCGCGTATACATGCCCGCACGAATAATCTTCAGCATACTCCCTCCTTCTGCGTACAAAGC\n-CGCGGAACCTGTCTCCAGGGACGGTGTAATACAAGATGGGTTCGTCACGCGCGCCGGATT\n-AATAAGGACGATGAGTGAGGTATGACCAATCAACTGCCAGCCACCCGGCGTTGCCATAGG\n-GATAAACACCAGTGCGGCCCGCCGATCCCGACAGAACCTGCCGCTGAAAGCCACCGCGGT\n-TCAGCGCCGTGGCGTGTGTAGTTGTTCCGGCAAACTCCCGAGATACGGGAAGCCCGGTTT\n-GAAAACCTAAAAACCAGACCACGTATTCCACGCATAGAGTTATGCAATTCAACAACCTGT\n-TCGCTCAACCCGCAATGCGCCGCGACCACCGCCAAATCCGGTCCGCCTGCCACCGTAAAC\n-CAAGGGGATTTCAATCAAAGCGAGACTCGTGGGTGCCAGCGCCTCGCTCCTCTCCACCAG\n-CGTTGCAAACGCTCTATGGCATCCAGCGCCAGCGACTCAGGATTACGCAAAATCACCGTG\n-ATATTTGTTCCACCTGCCGGGAAACCTGTTCAACCACATTCGGCAATATATCCACCAGAC\n-ACCCTGCGCCAGTCGCCAGGATCCCGGTTTCTGGCTAGCCAGTTCACCGGCGGTTCTCAG\n-TTCCAGCACTACCGCCGTTTCCACCTATCAGATAACAACGCGCTCGTTGCACTTTCACGT\n-GTGGGACTATTATTCGTTATGCAGGATTAGGAATATCAATACAAAGGTCACATCAAGATT\n-TCGTATTTTCACTTCAGCCACTCGCTCAATGCGCGAATACCACCACGTTCAGAGTGGCAG\n-ATGGTGACCTGCAGCATAAAATGCAATCCCTGCTCGCGGGCCTGAATGAATGGTCTTTCA\n-GAAAACTTCGCCAGGACCAACAGGCATCCACGCCAAACGCGGCGGCTATCGATAAAACTT\n-GCCCGCCGCCCGTGCACCAGGCGACGCGCTGGACCACCTCAGTCCGGTATCGCCACACCA\n-TAACGGCTTACGTCCCAGACGCTTTCAATCCAGGAAGCCAGCTGGGCAGTCCCGGCACAG\n-GCAATTGAGTTTCGCCCCACGGCACCAACGGCTCATTTCGCCCATGACCGTGATCCCCCA\n-ATGCGCCGCCAGCTGTGCCATGTTATTGCCCAGCTCAGGATGTGCGTCAAGCGGCAAATG\n-CCAGCCATATAAGGTTGATATCAGGTTTCGCCAGCAACGTTTTTAAACGGTTACGCTTCA\n-TTCCGCGAATGACCGGAGACTCTCTCCTTCCAGAAGTAGCCATGATGCACATGACCGCAT\n-CCGCGCCCAGACGCACTGCCTCATCGAGCAAAGCCTGGGTGCGTGGTGACACCGGTAACA\n-CAATTTTGCACCGTCTCTTTGCCTTCCCACTGCAAACCATTCGGCGTGGTAATCACTAAT\n-C'..b'TGACCGTGAGATGAACTG\n-GAAGCAATATCTTTGTGCCATTCTCGGCCTGAACATGCTGGGGCTGGCGGTGCTGTTTTT\n-ATGTTGCTCGGTTCACACTAGTCTGCCGCTGTAATCTGGACACCAGCAGTTGCCGAGGGC\n-TGTCGTGCGATGATCTGGCGCTGAATACCGCCGTCAGCTTTGTCACCAATACCAACTGGC\n-AATCTTGTAGCGTGAAACCACGTTGAGCTACTTTTCAGCCAGATGGCGGGCTTAACGGTG\n-CAAAACTTTCTTTCTGCCGCCAGCGGGATTGCGGTGATTTTTGCCCTCATCCGTGCGTTT\n-ACCCGCCAGAGCATAGCAGCACGCTGCGGGAATGCCTGCGTACATCCTGCTACGCATCAC\n-GTTATGGGTGCTAGTCCCTCGTGGCGTTGTTGATTGCACGTTTGTATTCAACAAGGTGCG\n-CTGCAAAACTTTCTGCCTTATCAGGCTGTGAATAGCCGTTGAAGGCGCGCAACAGCTGTT\n-ACCCATGGGGCCTGTAGCTTCTCAGGAAGCGATCAAGATGCTCGGTACTAACGGCGGTGG\n-CTTCTTTAATGCCAACTCGTCGCATCCGTTTGAAAACCCCAACCGCACTGACCAACTTCG\n-TGCAGATGCTGGCGATCTTCTTGATCCCAACGGCGCTGCCTTTGCCTTTGGTGAAGTGAT\n-GGGCGATCGCCGCCAGGGGCGCATGTTGCTGTGGGCGATGTCAGTGATTTGTCATCTGCG\n-TAGGCGTGGTGCGTGGTAAGAAGTTCAGGGTAATCCTCATCTGCTGGCACTGGGCACGGA\n-CAGCAGCATCAATATGGAAGGTAAAAGAGCCGTTTGCGTGCTGGTCAGTAGCCTGTTTCG\n-CGTCGTGACGGGCGGCTTCCTGTGGCGCGGTGATTGCGATGCATGATTCGTTTACCGCTC\n-TGCGTGGCATGGTGCCGATGTGGCTGATGCAAATTGGTGAAAGGGTGTTCGGCGGTGTCG\n-GTTCTGAGTCTTTACGCATGATGCTGTTTGTCCTGCTGGCGGTGTTTATTGCCGGGCTGA\n-TGATTGGTCGTACACCGGAATATCTGGGTACAAAATCGACGTACGCGAGATGAAACTGAC\n-TGCACTGGCAATTCTGGTTACCCCGACGCTGGTGCTGATGGGCGCGGCGTTGGCGATGAT\n-GACCGACGCCGGACGGTGAGCGCCATGCTCAACCCTGGCCCGCACTGGTTTTAGCGAAGT\n-GCTGTACGCCGGTGTCATACCCGCCGCTAACAACAACGGCAGCGCTTTGCCGGATCCCAG\n-CGCCAACTCTCCGTTCTGGAACTGTTTACTGGCGTTCTGCATGTTTGTCGGTTGCTTCGG\n-GTGATTATCCCGGTGATGGCAATTGCCGGTTCGCTGGTGAGAGCCAAGCCGCCAGCTCCG\n-GCACATGCTGCCAACGCACGGCCCGCTGTTTGTTGGCCTGTTAATCGGCACCGTGTTGCT\n-GGTTGGCGCACTGACCTTTATCCCTGCCCTGGCGCTTGGTCCCGTGGCGGAATACCTCTC\n-CTGATGATATTGAGTGAGCACTGAATATGAGTCGTAAACAACTGGCGCTATTCGAACCAA\n-CACTTGTCGTTCAGGCAGCTGAAAGAAGCGGTGAAAATTAAACCCGCAGGGCGCAATGGC\n-GCAATCCGGTAGATGTTTATCGTCTGTATCGGCAGTCTGCTGACCACCTGTATTAGCATC\n-GCGATGGCAAGCGGTGCGCAGTGCCCGGCAATGCGCTGTTTAGCGCGGCCGTTGGCTGTG\n-GGTCTGCGATACTGTTAGCTAAGTTTGCCACCGCCGAGTGAGCGTGGCAGAAGGCCGCAG\n-TAAAGCGCAGGCCAACAGTCTGAAAAAGGGGTGACTGCCTTTGCCCGCAAGCTGCGTGAG\n-ACACGAGATATGGCGCTGCGGCGGACAAAGTTCCTTGCCGACCAACTTCGTAAAGGCGAT\n-ATCGTACTGGTAGAAGCTGGCGATATTATCCCCTGCGATGGTGAAGTTATTGAAGGGGGT\n-GCATCGGTCGATGAAAGCGCCAGCCCACCGAAACGGCAACCGTGTGTATCCGTGAATCGC\n-GGCGGCGATTTGCCGCGTCACCACGGCGGCACGTAGCGTGATTCTGGACGCGAGCTGCCC\n-GGTCATTGTAGCGGTATAGACGGCGAGACATGTCTGCATCGCGATCGACTCGCCGATGGT\n-GGAAGTGCGCAGCTGAGGGGACTGAGAACGAATCGCCCTGACCATTCTGGTGGTACATCG\n-CCCGTGACTATCGTCTTTGCTGGCAGCGCCACAGCGCGTGACGGTTTTCACGCTGTGCTG\n-CGCGCGGTACTGCTGCAGTCAGCGTAACGGGTCACTGGTGGCGCTGCTGGTCTGTCTGAG\n-CAACCACAGCAGATGCGCGGCCTGTTGTCATGTCCGGCGTCGCCGGGATGAGCCGGATGA\n-CTAGGCGCGAATGTGATTGCCACCAGCGGACGGGCAGATTCGAGAGCGGCACGGCAGGTG\n-ACGTTGACGGTCCTGCTACTGGATAAAGACCCGGGCACCATCACACTCGGTATAACCGTC\n-AGGCGTCGGAGTTTATCGCGCGCGCAGGCGTGGGATGAAAACAGCGCTGGCTCGACGCTC\n-GGATGACTGGCTTCGCTGAGCGGCGATCCGAAACGCCGGAAGGCCGCAGTATTGTGTGAT\n-CCTCGCCAAGCAGCGTTTTAACCTGCGCGAGCGCGATGTGCAGTCGCTGAGGTTGCCACC\n-TTTGTACCGTTTGATCTGCGCAAAGCCGGTCGAGCGCCGTAATCGACAACCTGACAACGA\n-TGATCGCGTAAAGGTTCTGTCGATGCCATTCGTCGCCATGTTGAGTAGACGCTATTTCAG\n-GTTCAAAGTCGATCCGATGCGCGTCAGGGAGCCACGCCGCTGGTGGTGGAAGGTTCTCGT\n-GTGCTGGGCGTTATCGTGATGAAAGATATCGTCAAAGGCGGTATTAAAGAGCGCTTCGCC\n-CAGCTGCGCAAAATGGAATTAAACGGTGATGATTACCGGCGATAACCGTCCTGACTGCCG\n-CCGCGATTGCGGGCGCGGAAGACCGGTGCGTCGATGATTTTCTCGCCGAAGCGACACCGG\n-AGGCCAAGCTGGCATTGATCCGTCAGTATCAGCGGCGGAAGGTCGTTTGGTAGCGATGAC\n-CGGCGACGGCACCAACGATGCTCCGGCTGGCGCAGGCAGATGTCGCGTGGCGATGAACTC\n-CGGCACCCAGGCGGCGAAAGAGGCGGTAATATGGTCGATCTCGACTCTAACCCGACCAAG\n-TCCGATTTCGAGGTGGTGCACATTGGCAAACAGATGCTGATGACCCGTGAGCTCGCTGAC\n-CACCTTCAGCATTGCCAACGGATGGCGAAGTACTTCGCGATTATTCGTATCGCGGCAACG\n-GTTACGCAAATGCGCTGAACATCATGTGCCTGCATTCGCCCGACTCGGAAGCAATCCTCA\n-TGCGGTGATTTTCGAACTCTACCCTGATTATCGTCTTTTGATTCCCCCGGGCGTTATAAA\n-CCGCTTAGGTTAACGAGGTTCTGCCATGTTGCGCCGGGTAACTTGGATTTACGGTCTGGG\n-TGGGCTGCTGCTGTTTTATCGCACCAAAGTCATTAAGGTGGTTCGAATCGTTTGCGGTCT\n-GGTGTGAGTTTACCATGAGTGGATTACGTTCATTATCAACATTTATCTTCTGTTATTGAT\n-TACTGGCGGCGTTTACCCGCTTCACGGTCACTGGGGCAATGGTGGTTTCCCTGGCAGGCC\n-AATGGTTTCGTTGATTCGTGAATGTAAGCGGCGGTTCGGCATTAATCGGCAGAATTTGTC\n-ACCGGCAACGGCTTTCATGGTCGCCCGTCGGCAACGGCAGAAATGCCCCGACCAGGTCCA\n-GCAACAGAAG\n' |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 test-data/result2_scaffolds.fasta --- a/test-data/result2_scaffolds.fasta Fri Sep 28 19:18:54 2018 -0400 +++ b/test-data/result2_scaffolds.fasta Thu Nov 29 04:34:34 2018 -0500 |
| b |
| b'@@ -1,376 +1,675 @@\n >contig_1\n-AAGAAACATAAACAGAACGTCAGTAATCCAGCAAACTGACGGTTACGAAATAGGCGCGGC\n-GACAATAATCTCGTTCTTTCACCACCTCCGGCGTCAGATTCGGATTCACAGCACATCGGG\n-ACCAACGCGTTGGTGCAAACGGATGCGTGGTCCAGTTGTTCCGGGAGTCAACATCTCTAC\n-AGGCTTGAGGACCGCAAATCTCATGGAGCCCCAGTATCGCAGTTTTGTTGCACTATCCCG\n-CGTGTTTCAGGCGAGTGTTCTACCTCGAGTAGCCCGTTACAGAAGTCAAATGCGGCTCTA\n-GCACGAGTCGTAAAGAGGTGGCACCCCGCTAGGAGGGGCTAAGCATTGGCTCAGGAAACT\n-GCTGTATTAAAGAATTCGGTTGTACGGTTCCGCAAGTGAGGTCGGCCTCTAGGTCAAAAG\n-CGTCCAGTAAAGCTAATATTGTCACCGATAAGGTTGATTAACTGCTCGAAGGAAATTTAA\n-AACCATTGAGGAGGATAAGAGCGATATCGCAGTGGACCCAATTAGTGGTTCATTCTATTG\n-CCAGCGACCCATGTATATTCGGAACGTGAGGGTGAAACGTGCCTCCATGTAGAGCTTCAG\n-AGCAGGCATTAGATGCTGGTACAGCCTTTTCGTCGTCATTAATCGGGGTAAGTTACTTAA\n-TGCGACAACAGGATGCGCTTTTCGGGGCAAAATTGAAGAGCGTAGTCATGCGGGCGAACG\n-CCAGTGCGTGCTCGCCAGTAGCGTCGCACTGCATTAAGAAGCCGTTTGCGCCAGCCGTTA\n-AAGAGCGTTTCTGGTTCTACGGTGATAATATGATTTCTGGTGATCCGTGTTGCACCGGAC\n-CCATAGTTCCAGCACTTTCTTCAGTTCTAGTGATAGCGCGCCTGATATGGCTTTCGGAGA\n-TACACCCCAACCCAACGCTTTCATGATAACCGCGATCGGGTGGGAGCCGTTAGACACCAC\n-CCGTTATCATAGGCCACTGGTCAGTTAATTAAATGCAGAGTGCCCCGGCAAACATTTCCT\n-CGCCCCGATAATCGCTCCTGGGAAGAATCATGCTTCCCTGGATGTACGAACGAGAATTGA\n-CCCGCGGCGCCCGCATGGGAGATCGTGCGATTCGTCTGCCAGTTGTGCTTCTTTCGCCGC\n-CTGGTTGTACAACATGCCGTGCGGTTTGACATGACGCATTACGCGCTATCCAGCGCACGG\n-GAAATTCCTTCAGGCGCCACCAATTTTAGATACAGCGTCTGGGCGTAAACGGGGTTTCTG\n-GCGGCATCCAGCTGACGCGCTGCGAAATAAAATTTTCCCCTGTCGGGAAAACTCGGGTGA\n-GCGCCAATCGCGACACCATTTTATTGCTTCCACGCACGCAGCCTGCATGATTTGCGCATC\n-GCCTGCATGAAATCCACAGGCAATATTGTGCAGAGGAAACCAGCGTTAATAGCTCTGCGT\n-TGCTGGCGCATCGCTTCGCCCAAGTTCGGCGTTCAGGTCAATTTTCATTGTGCAGCCGCC\n-ACGCTAATTGTTCAAAAGTAACTGTTGCTGATTTGCCGTGCTTTTTAGTGCCTCTTCCAG\n-TGAACACTGGACAAAATGAATCGGCTGACCGAGCGGCGAATTTGCGCCAGATGGTACATA\n-TCAGCCTCTCAATGATACAGGCAATACGCGGGTAACCACCGGTGGTCTTGCCGTCGTTCA\n-TCAACACAATACTGCTGCCCGTCCTCTTGGCACCTGCACCACGCCCGGTGACAAACCGTG\n-AGATAACAGTTCGCGATCGGTGGTGCGTTTTAAATGTCCCCTGTAAGCGATAGCCATGCG\n-GTTATTTGCGAGCCGGCTGCCAGGCGAACGCCAGAATGCATATCCTGCGAGGCGCGATTG\n-AACTCATGATATTCCGAGTGGCGGCAAGGCGCGAATTGCGGTTGCCCCACAGCAGCTGTT\n-TAACGCCCTGCGCTTCCATAGAATTGGTACGCTTCGATTTGCCAATCGGGAGTCGGTCAC\n-CATCCTTCAGTAAACGGCCTTCCCAGCCCGCCAATCCCCATTTGCAATCACTGCGCGGTG\n-CTGCATGAGCCCATTACCGGCGGAACATCAATACCACCCGCGACCGCCAGATAACTGCGC\n-ATGTAGCGTCTTCGTGGAGGCATCCGTCAGCGTTAAACGCTGGCCTGCTGTTTTCATCGG\n-CAATCGCCAGCCGGTCCAGACGCATTATCATCCAGCCGCGCTGTCGCAACCGGCACCCGT\n-CAGAGCCGAAACCACCCATCAGTTTCGAACCTAACAGTTAACTGACCGAGCGCTGATCTC\n-CATAGCGGGGGCATTGGCGTCATTACCACCAGTATAAGTGCAATGCGTAACGCGGGCATA\n-TCAGTGCGCCGCAGTGGCTGATATCCGACTGGCGAAACCGTGACGACCGCCATCCTGCAC\n-GCGCGTATACATGCCCGCACGAATAATCTTCAGCATACTCCCTCCTTCTGCGTACAAAGC\n-CGCGGAACCTGTCTCCAGGGACGGTGTAATACAAGATGGGTTCGTCACGCGCGCCGGATT\n-AATAAGGACGATGAGTGAGGTATGACCAATCAACTGCCAGCCACCCGGCGTTGCCATAGG\n-GATAAACACCAGTGCGGCCCGCCGATCCCGACAGAACCTGCCGCTGAAAGCCACCGCGGT\n-TCAGCGCCGTGGCGTGTGTAGTTGTTCCGGCAAACTCCCGAGATACGGGAAGCCCGGTTT\n-GAAAACCTAAAAACCAGACCACGTATTCCACGCATAGAGTTATGCAATTCAACAACCTGT\n-TCGCTCAACCCGCAATGCGCCGCGACCACCGCCAAATCCGGTCCGCCTGCCACCGTAAAC\n-CAAGGGGATTTCAATCAAAGCGAGACTCGTGGGTGCCAGCGCCTCGCTCCTCTCCACCAG\n-CGTTGCAAACGCTCTATGGCATCCAGCGCCAGCGACTCAGGATTACGCAAAATCACCGTG\n-ATATTTGTTCCACCTGCCGGGAAACCTGTTCAACCACATTCGGCAATATATCCACCAGAC\n-ACCCTGCGCCAGTCGCCAGGATCCCGGTTTCTGGCTAGCCAGTTCACCGGCGGTTCTCAG\n-TTCCAGCACTACCGCCGTTTCCACCTATCAGATAACAACGCGCTCGTTGCACTTTCACGT\n-GTGGGACTATTATTCGTTATGCAGGATTAGGAATATCAATACAAAGGTCACATCAAGATT\n-TCGTATTTTCACTTCAGCCACTCGCTCAATGCGCGAATACCACCACGTTCAGAGTGGCAG\n-ATGGTGACCTGCAGCATAAAATGCAATCCCTGCTCGCGGGCCTGAATGAATGGTCTTTCA\n-GAAAACTTCGCCAGGACCAACAGGCATCCACGCCAAACGCGGCGGCTATCGATAAAACTT\n-GCCCGCCGCCCGTGCACCAGGCGACGCGCTGGACCACCTCAGTCCGGTATCGCCACACCA\n-TAACGGCTTACGTCCCAGACGCTTTCAATCCAGGAAGCCAGCTGGGCAGTCCCGGCACAG\n-GCAATTGAGTTTCGCCCCACGGCACCAACGGCTCATTTCGCCCATGACCGTGATCCCCCA\n-ATGCGCCGCCAGCTGTGCCATGTTATTGCCCAGCTCAGGATGTGCGTCAAGCGGCAAATG\n-CCAGCCATATAAGGTTGATATCAGGTTTCGCCAGCAACGTTTTTAAACGGTTACGCTTCA\n-TTCCGCGAATGACCGGAGACTCTCTCCTTCCAGAAGTAGCCATGATGCACATGACCGCAT\n-CCGCGCCCAGACGCACTGCCTCATCGAGCAAAGCCTGGGTGCGTGGTGACACCGGTAACA\n-CAATTTTGCACCGTCTCTTTGCCTTCCCACTGCAAACCATTCGGCGTGGTAATCACTAAT\n'..b'CCTCATTCTGGAGCGTCGT\n+GGTCAGTTCTGGCGAGCGATGCGGCGATCCTGATGGGACTTCGCTCCCGCCCCTTTGGGC\n+CGGCACGCTGATGAAATCCATTGTCTTCAGGCTTGTGGCTGTCGTGGAGACTGTAGTGGC\n+CAGAGTCTCCACCTCCACAGCTGCACTGCAGTCGCTAGCTTTCGGCGGCGGGCCTGCTTG\n+CTCACCTCCCACTCCCTGGATTGGGGTTCCGACTCCTCTTATGGGGATCTCGATAGCCTA\n+CCACTCCTCCTAAACGGGTCGTTGGGGTCGGGGAGCACTGCCCCCTGTGCTAGTCCATCA\n+GATATAAAGGGGGACTTTGGCTTGTTGGTCCCCAGCGCTCCGTGGGAAATAGAACTAGCT\n+TCAGTTCTTAGGTTATATTTAAAATTTTTGTTCAACTTAATTAGTTCAAATTTGAATTTT\n+GAATTCGAATTTCGCGCCCAACGAGCGCGCGGCCGAATGACGATCGCACCGCTGATCTGG\n+CAACGCCAGTCTTACCAGCTCGTCGACTGCGAAAGGTTGGCAATGCTATCAGCTGTATTG\n+TCTGATGCAGCTGATCTGATTTATTACCAGTTTACTGGATCACTCGTGAATTCGGAACGA\n+CACCGTGACGCTCAGAAACGCGGCGCAAAACCCCAGAGTGGATTTGCGGGTTTATGTTGC\n+AGTTTACGGCTGACCGGACTCGTATATGACGAAATTCGCGCAGCGCAGCAAAAGACGTGC\n+GAAATACGCGGGAACTCGATTCACTATCCATGCCATAATGTGTGTTGGTATTAGTGTGTG\n+TGTGGAGTGAAGTAAGTCTCCAAAGTGTGTTTGATTGCGGGTAGACTTGGGTTCTACGCA\n+TTATTGCAACGTTCGTTCTGCACATTAAGTTTTGATCGCCGAAGAAGACAGACATGCCTC\n+GCTCCCGAATTAAACGCGTCAGAAAACGTTACGACGACGGGTAGAGAGTGATGCTGAGTA\n+TAAAAGTGATTCAGATCCCACATACTTAATGCAAATAAGTTTATTTTTCAACTTTTTCTA\n+TTGTAAAATGATATTTTATGTCTATGTGCTTAATTCTCTTGTGGCAAGTTGGGTTATTTG\n+CAATACTAATGCAACCTGGACCTTTTAATTCTAGTTTAATTTCTACCAATAAAAAGAAAC\n+TTGAGCCATAAGGCTTCTCTAAAACCTTCAAATAAGGCCATGTAATCTGTCTTCGGTGGA\n+TGAAGCTGCAACTGATTTTTGCTTCATTGTGTTCCATGAAATTAAACAACTTTCAAACAG\n+TTTAAATAAATATCCAGTAGTCACTTCGTCTGTCTGTCTCATTTCCTGCCCAATCAGAAT\n+CAGCATGTCCAATAAGAATAATACTAAACTGTACACTCTCAATCTCAAATCAACAGTTCC\n+TTTTTAAAATGCCTTAAAACTCTTTTTAAGGCATAGCCATAATTCCTTATTGTTGTTATT\n+CGAATATCGACTTAAAATACTTATTGATCAAGTTTCTACATGGTGCCTCACATGATTCTA\n+CAGATTGTAGAGCCTCATAGTTTAGTTTGCTTGGAAGAGGTGTACTAACTGCATTACAGT\n+CTTCCATATTAAACTTTTTCAACACATTCTTTATATATGCAGATTAACTGAGACATATCT\n+GACTTTTATTTCTATCAATTTTAATTCCGATAAAATATCGAACTTCCTTCAAATAAGTCA\n+TTTTAAATTTATTTAGAAGGTATGATTTAAATTTAGACCTAGTTTCGGATTTACTAGTGG\n+CAATTATTACATCGTCCACATATAACAAAATATAGATATTATCTAAGAATTTTTCCTTTA\n+TCTAATATAATATAGATTTTTCAAATACAACATCTTTTCGCACATTTTTCAAAACTTCAA\n+ACCAGCATCTTGCAGCTTGTTTTACTGCCATATTTTGCTTTATTAAGCTTTTGCATTCTG\n+CATTCTCATCGCAATATGGCAACCCTTTTTGGAACAACTTCATGTAGATTTCATCTTGCT\n+CCAAGAATGCTGTTCTCACATCCATATGATGGACTTGTAAATTTTATTGATTTGAAAGAG\n+CCAAAACCGAAAACTGGAAATTCGTGCAGCTGGTGCAAATGTCTCATCATAATCAGTCAC\n+ATATTCTTGTGTAAAACCTCGTGCTACTAGCCGTGCTTTATGCTACTAAGTTTCCAAACT\n+CATCTTGTTAGTGCTACTAAAAACCCATTTACAATCTACTATGCTTTTATTATTAGGCTT\n+CTGCACCAAACTCCACGTTTTATTTTCTCTGAATGTGAACCAAGTTCATCTTGTATAGCT\n+TTTTCCCCAAAAAGATCTGTCATCCACGAAATTCAATTTCATCAAATCTATTGGGAATAT\n+CAATATCTATCGATAGTTTAGGTTTATCTTTGTCCAAGTTACGGGGTTGGACTGTCACCC\n+GCTCTCCGCTCCCTTTTACGCTCTCCGCTCTTCACCACAGAGTCTCCCAAAGGAGTCTCC\n+GCTGCGCTTGGAAGAGCCTAACTAGATAGAATAAGCACCAGTGTCAAAACATTTCGCAGA\n+ATAAATATACGCCCGGTCGCGCCATCAATTACGAAAGTCTAGTGTTCGCTTTTTCTTCGA\n+GTTTCTTTTCAGCATATTTGGAAAATTCCAGGACAAGCACCCTACAACCCATCATTTTAT\n+TTCTTTCACTGCGTCCTGATTTCTTACTCACTTTTGCTATCATTTTTATTTCATCACCAG\n+TTTTCTTTAACTGGATCGGCATTCTTTAGACATGTGGAATTTTTACTATGTTGTACATCT\n+AGAATCAACAGATTCATCATTTTCCACCATTGGAAAATCGAGGACTCTACATTATCTCTT\n+ATTAAAGAATCATAAATACTTTTATGTTGAACCTTCGAGTCTTCTTCATGTTTTAATTCG\n+TTTGTCATCTCGATCACCAGAATCGTATCTCGCTTTCAAGGCCTCATCTCTTTTAGACGC\n+TGCTCATTTCTTAAGAACTGAGCCAACTGCGAAACAGACCTAGAATGCCTAGCCCGGAAC\n+CGATATGTTCGGGGTCGCTTGAAAAGGCAGAGTAACGACATATTTGCTCGCACTCCGTTT\n+CTCGTGAGTCGTTTGAAGAGAATTCTTCTCGCACGAGATCGGATTCTTTTGCAGCTTTGT\n+TGGTATATGTCCCTCGCAGAACTGCTGAGGGAGTTTGTCCAGTGAATTATCGTACGCGTG\n+GGAGATCTGTGCCGAAAAGAGCTACTCTAACGGGCTGGGCTGACACTGGCCCAGTTAGTA\n+CCCAGCCGAAAGTATGGTCTCTTGCCCGCCCCAAGAGAGAGCGCAGATGTTGGTTTTGTA\n+ACCCTCCAGAAGCACCGAAGAGGAGGATTGCCAAATCCATGTGCGAAGAATTTCATTGGG\n+CCCTGAAGCGAGTGCGGCAAATATGTCGTTACTCTGCGCTTTTCGCGACCCAGTGCCTAT\n+CGGTTCCGGGCTGGGGCATTCTAGGTGCTGTTTGGCTCAGTTCTTGAGCTGGCATTAAAA\n+GATGGGCTGTGAAAGCGAGATACGATTCGGTGATCAGATGACGGCGAATTAAAACGCAGA\n+AGAAGACTCGAAGGTTCAACATGAAATATTTTATGATTCTTTTAATAAAAGATAATGTAG\n+AGTCGATTTTCCAATGGTGGAAAATGATGAATCTGTTGATTCTAGAAAAATGTACAACAT\n+GATGAAATTCCACATGTCTAAAGAATGCCGATCCAGTTAAAGAGCTGGTGATGAAATAAA\n+TGATAGCAGAAAGTGAAGTAGAAATCAGACGCAGTGAAAGAAATAAAAAAATGATGGGTT\n+GTAGGGAATCCTGGAATTTTCAAATATGCTGAAAAGAAACTCTCGAAGAAGAACACTAGA\n+CTTTTCACC\n' |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 test-data/result3_contigs.fasta --- a/test-data/result3_contigs.fasta Fri Sep 28 19:18:54 2018 -0400 +++ b/test-data/result3_contigs.fasta Thu Nov 29 04:34:34 2018 -0500 |
| b |
| b'@@ -1,548 +0,0 @@\n->contig_1\n-ATCGAAATCAGTCGATACCGCAGTGATATATCGTGAACATGGGTGCAACGCTGAGTTACA\n-GACATGCGCCTGGGGAACGGTAGGGAAATGAACCTGGCTGAAGGCGGCTGTGACGCAAAG\n-TAAATTTGTCGATGATAACCGGCCGGTGAAGGTGAATAATGACGCGTAATTTCGTCAATG\n-ATTTGTCGGCAGACGTGAATATACCAGGCAGCTATCTAAAGCCTCATTCAGCAGTACGTT\n-TAGCGACATCTCGCGGGTGGCGGTTATAGCCATGGTGCGGTGTGGAATCCCGCATGGAAC\n-GCGTGCGCTGGTGTGAACAATCGTGCGTTCTGACCATCAACGATATAAACTGCGCTCGGC\n-GCAGTTTTCCGTTTACAGATGTTGAATAGGGAAAATCTGGCGGCAAAAAAAGCCCGACCA\n-GTTACGGCGGGAAAACCTCATCCTATGGGAGAACAATGCAATAATGAAAATTGCGGGGTT\n-ATCATCTCCCAGTCATATCCAATACTAACAATAAGTTACTCTACTCAACGCAGCATAAAC\n-ATTTGTTTTGTGCGTGGGAACACGCCTTAAGGTGGTAAAGGGCGAGTGGAATAGCAAATG\n-AGCGAGTATCAGCAAGAATACTCCGCGCTTTACCACAACGTGATGAGAGCGCATGAAAAC\n-TGCAAGCGCAGAGATAACTCGCCTGCTTGAGATAAATGCGTGCTTTTATCAGCGGCTTTA\n-TTTTCAGCTCTTACTGCTTCCGTAGGTCACGTTCAGCTCAAGAATAGAGAAATATCGCCA\n-TCTTTTGCATCAAGCTGTACGTCTGTACCGATCTCAGCATCAATTTGCTACGTATTTACA\n-AATGACCTCAGAATATCCTTTACGCACTGCGGCAGATAATGCGGTTCTGCATCGCTGCGA\n-CGGCGTCAGCAAGCAATAATCTGCAGCCGTTCTTTTAGCAATGTTGCTGTGTTTTTCTTG\n-CGCTGCGAGAGAAGAAATCGAGTAATGACCATAACTTATGCCTCTCGAACAAGCGTTGAG\n-GAAGCCTTTCTTCTCCTCTTCAATGACCAGCGGAAAAGGACGTGGTCTTCTCCCAACAGA\n-CGTTCTACTACGGTATCTGCGTATGGCTTTACCGCAGCGCGTTAATGTCGAGAATGACCG\n-GTTTCACACCCTGGTTAGAGCGCGCGCAATACTGATTGATCCTCTGGGATGCACGCCGAC\n-GAGTTCTGATGCGCAGGATCTCACAGCACATGCTTCGCATGCTCAGCATGTCACCTCGGC\n-TTACGCGGCCTGCGGTTATAGCGCGTTAACAGCAGGTGCATCTTTAATAGGCTCTTCGCG\n-CCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCCTAAAATTACGTCAGAGTCGCG\n-TACTGAGGAGACTCCGGTGTTGGTGGTAATAATGCAGCTTCGTCTGCAAAATAGAGTGCG\n-CATTAACGCACCGGTTTAAACAATCCTGCGGGGAGGCACAAACGATAAATTCAAAATCCA\n-GCGCTTTCAGATCATCAAGAACTTTGCGACCCTTCACGGCTGAGGTCATCTTTATCGCGT\n-GTTTGCGACTGCCGGCAGAATATAGAGATATTTTCAGTACGCTTTATCTTTAATTAACGT\n-AACGCCTGATTTAGCGTTGCATCGCCTGAATGACGTTGACGAAATCTAGGTAAACGACCC\n-GGCGTCACAACCCATTAATCAGGTCGAGAGTACGCAGGCCGATATCAAAATACTATCACG\n-ACAGTTTTGCTTTCCTTCTGGGCCAAACCAGTGGCGATGCCGCGCTGGGAGGTGTCTTAC\n-CAAACACTTTGCCCGATAAGTAACAACAATAATGCGTGCCATAAGAATTCCTTGTTAAAA\n-AGCCGATCAATTTAACGGTTGTAACGGTCAATAAGCGTTTTCGACTAACTGCAGTCGCGC\n-CGCTTTGCCATAAAATTCTGCTGCGGATTTGATCACTCAGCCAGTATTCACCTGCGCATG\n-GACACCAGTTCCGCCATGCAGGTTCGTACAAAATATTTGCGTTTCCCGGTCACGCACTTG\n-CCCCTGCCAGCGCACGACCGCGCATTCATGCCATATGACATGAATGTTCCCATCGGCATC\n-AAGTTCGGCCCCAGCGCCTAACCGTGCTTGTAACAATCAGATCACATTGTGCCGAGCATT\n-AATACGCTGCACCGGACGCACCGCGGGTCGTATCTATTAAACGCGTTTTTGTGACCGCGT\n-TGTATTTTTGCGCTGCGGCAGCCTGCGGTGTGTTGGCGCTGGCAACGTGGCGCTTTTTCC\n-CCTTTCCTTCCGTCAGGCATAGGCAGCCCATCTTTTCAATTTCGCTTTAAGTTGCGCATC\n-TTTGCAGCCACTACGCCAATAACCGCGGCAACGCGTTGCCGAAACCGCCTGTATGCATCG\n-CTGACAGGTTTACCGGTCTTCCAGTGCCTGACGTTGAGTACAACGGGCATGTTTTAAAAA\n-TGGCGGGGCCTGAGCGATTTGTCTTCCAGCGCCTGATGGACTAACCTTAGGTTCTGCCTC\n-ATGCAGATCGAAAAGCCCACAGATAAAGGGAAGCTACTGCCTTTTTCAAGCTGCGATTGG\n-CGTGTTTGACATCCTGGCCTTATCGCAATTAGCTATTAATCATCGCCACGCGCGCGATGA\n-TGTGCCGACGACTATATAGGCATGTTATAGTCTGGATTATTTTGCAGGCAAGTCACCCTC\n-CCATTTATTCAGAGTAAAAGTCGTATCTGTGATAAATGGCGCTGATTCATAGCTTAAAAA\n-ATCCCTTGTCAATCAACCCATTGCCGTCGTACCGGTTTGATTGTTCTTATTTACGCTTCC\n-TTTTTCCGCACCCTAATCGTGCACAGCATCTCCAGACCTGTTTAAATATCCAGTATGGAG\n-GGGCAAGTGTTATCACCACGCCAGCGCTTTCTTACTTTCCATTTTTTGCGCATGCATTAA\n-AGAACACGATCGCTTATCTTAATATCCGCCACAGAATTGCTCTATCATAGCAAACCGCAG\n-AAGACGTCTGATACTTCGGTCAGCGTCATCGTAACTCGTCAGGTCAGCGGGTTTTGATTA\n-CGCGATTGATGATGACATGACGCATAAGTGTCTGTACGCGTTGGCATTATCAGGATGTGC\n-TATGAATATATGATGCGTATTTTTATATATCGGTATTGTCAGGTGACACTGTGGGATGCC\n-ATGTTCTCATCAATGGCGTCTGGGAAATGACGCTGGCGGACTTCAATCTCGGCGTGCGGC\n-GTTGTTTGCGACGCCGTATATTTGTGTGAACTCAGTATGGGCATTGCCCAGAGTTAACAA\n-GCGAAATATCTCGGCGAGAAAAGCCGCTGAAAACCTTACAATCATACCAGGCTACGATCC\n-CAGCGAATTTACATCGCTACCGGTGTATTTGCGATGTTAAAGAAAAATTATGTCGTGATG\n-ATCGTTATTTTGGGTGTGGATGGTAGCGGAGTGGAAAAATCAATCAAACCACCACAAAGA\n-TGTTATTTATGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTTATTCGTCATTAACC\n-TCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGAGAGTCCCGTCGTTGA\n-CATTTACTTAATTTTGAATATCGACGTTTATATTTTTAGTTTTGTTTTTACGGGCGTCGT\n-TTCGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCCGT\n-GACTATCGAGTTCTGGGGAATATCTGGATAAATCAACTGGAATCATCGATTCTGGCCCGA\n-AGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCTCACATGCACTTTCTGACCTTTTTG\n-G'..b'AAGCAACCTTTGAAAGCCAGCACCAG\n-TTTATTATGCGGTGATAACCCTTAAACCATAATAGAACGCAGGAACCAGCTTTATTTTGT\n-GTGCTCCCATCCTGTGGAACGAGATCGGCAGTGATGACCAGTCAATTAGGAAAAGTCAAA\n-GCCATACCTCGCTCATTATGCCACAGGACGATCCGCAAACCCGCCGCTTGATTTCATTTT\n-GTCGCCAGGCGTCGCGCAGAGCCTTTCCTGTCCTGCTTTTGTGGAGAAGATGGCGTGGCA\n-AGCACTGCCCTAAGTCAGGCAATTCATAATGAAAGCGAAGCTTGCTGCAGAGGTCCTTAT\n-AATCCCGTCAATTGGAGTTATTATTGTGAGCTGCGCTGCGAATTAATTTATGTGGCGATC\n-GCTACGGACAATGGAAAATGGCCGTCTTGAGTCGGCTGGAAACTGGCACCGGCGGCACGC\n-TGTTCTTGAAAAGATTGAATATCTGGCGTTGAGTTACAGTCTGCTTTGCTTCAGGTTATC\n-AAGCAAGGGGGTTATCACCGCGGACTGGTAATGCCGGCCGTTTTAATACCAATTGATGTC\n-AAAGTGAATTGCAACAACGAACCGCGGACCTCGCAATGCTGTGGCAACCAAAATCGTTTT\n-AGTCGCCACCTGTATTACGCGCTGCCATGCACTTTGAAATTACCATCCCGCCCTCTCGTA\n-TGCGGCGTGCAGCATTTCCGTGCGCTGGTGGAATAACAAATACGCAGGCTTGAAAAACGC\n-TTCTCTACGCGGCTCTGAAAATGATGACGTGCCCTCGCCTCGCCTGGTTTCTTGGCATGG\n-CCAGGCAACGATTTGAACTTTTACAGCTCATCGAGAATCTTGCTCTGAGTAGTGATAAAC\n-GGCGCAGTCCCGTCAGTAATTTGCCTGGAAACATCTGTTTACCGCAGGCAGGCGTGACAG\n-ATGATGTCAGCGCCACCCGCCCTTTCCACCAGTCTGTCATTTCGCGGAAGTTGAAAAAGA\n-GGAATTATAACGCAGCCCAGGTACAGGCCGGTCGCATTCAGGAAAGTCGCTTATTGATCG\n-CCCCGCCACTACGCTGTGGCGGAAAATGAAGGCAAACATGGCATTGATGCAGGGCAGTTA\n-AAGCGCCGGGTATTGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCA\n-TTCCGGCCACTGCTAACAATTTTCAGCATCGTTTTAAGCTTGTCTATCCCGCCACTTTAA\n-AAAGCTAAGCGATATCCTCCGTTGACTGCTCTGATTCAAAGAGGTTACCTCGGTAATCCG\n-CTTCGAGATAGAAATGATGTGCTTGTTTGTTATACTGGCATGGACTCCCATCGCGTTATT\n-CCAGCCCATTACCGAAAACCTGTACTTCTCCCGGGAGTTGTTCAAACAGATATTTCGGTA\n-TCCCCTGAAAACTCGCGTATAGCGCCAGTCTCACATAGACATTCAGCTGGCGTTGCCTGC\n-GTATGTCATCCCCAGTTATCATGCTGGCACGCCCCAGCCAGCGATTCGTTAGTGGATTCA\n-GCATGTATATTTGAAGGCCATTACTCCCCAATCATCTCATTCTGCGCTGGCGTATGTAAG\n-CTGGGTTTGCGGCTCTAATAGAACCCATAACCAGGTAGGGACAGGTTTGACCTCTTGCCC\n-GCTTCCAGGGAGATGCTCATTTCCCATTCGCAGTGCCGTTGCGTTAACTCCGTTTGTTCT\n-GACTGTCCAGTACGTGGAAAAAACTATTTTTCTGCCGCGATGCTTTATAACGAGACGCTG\n-TAAAAACCGTTTTGTGCCATGTAAACTGGCGAACATTCCCCATGTATCTGAACGTGCGGT\n-ACGTCGCCTCCGCTATGTCCGCGATGCATGTGTTGAGCCAAATATACAGACGACATACAA\n-ACGCATACATCAGAGAGACGTTATCCCCACCAAACTGTACCGCTGTAAACCACATGTCAA\n-AGCCGCCCTCAGTTTGCCACTGGCAAAGGAAGTCCAGGCTTCCCCATAAAGCGAACCAGA\n-TATTACGTCTTTACTCGATTGCGCAGGTCACCCATCCGTGCATCAGCGTACGGTTTTCAA\n-CATAGTCAATAAGTAACCACATTGAGATAATTGCCGCCAGCATCTGCGTCGTGGTGAGCG\n-TTTAGGCGTGAGCGTTCAGGCCGTAGATCGGGCGTTGGCTATGGAGCTGAGCGGGAGCTG\n-TGTGGTTTCAGATTAGAGTCGGTTCCGAACTTTCCCGGCAAGCGTAAAGCTCCCAGTTAG\n-TTCCATTTACGGGCACATCGTTACAAGATATCCCCCAACCAACCTGAGAAACGCGCTGAA\n-CGAGGCCGCCCGTCAGTGGTTTTTACCACTGTCAAACTTTCATTTCCCGTTGTCGCCTCG\n-CTGCCCTGGTTTCGGATAGCAATACGTGATTACCAGCACTACTCCCGCTGATATTCAATT\n-TAAATCCCCTTTATTATTTAACGCCATTACCCTCGCCACACATCAGCACGCATAATAAAT\n-GGTATGTTACGCGCATTCTCTACGTTATGTGCAAGTCCGCAGTTGACCGTGGCTGCAAAA\n-TCGACAGTGAATGCTCAGCGCCAGCGTGTCGAGATTAGAATTACTTGTTAACGTTCCGAC\n-GCTGTTATTCACGCAACGTCCAGTTTCCCCATTGGAACATTATCGCTGAAGGGAGGAACC\n-TGTCCAAAACCGACCCAGGGGGCATATCCAGATTGATTAGCCCACCTTTGGAAAGAACTG\n-CTACCTTGATAAGCATACGACCGAGTCGTGAGCGCTGCGGCATAACCATCGTCATGGTGC\n-GTTGCGATGCATCTGTCGGGTTACTCATATCAATGACCAGAATCGCTCGTGAGGTCGATC\n-TGGCTGTGGTCATGGCATAAATTTCCCCTGGCTCCTTGCCGCGCCGGTGATAGCCAACTG\n-TCTCCGGTTATCTACGCCGCTGAGAGCCCACCAAACCCAGCGCCAGACTGCCATTACGAT\n-CAACTGAATATCGGTATTTTGCATTTTGACAACAGCGTTGCCGTCTGGCCAGGCACCATA\n-AAGAAACCGCCGAAAAGATCTGATTTCGTTCGCGCCTGCAGAAATGATTATCGCGTCTGA\n-ACCACTGGTGACGAGGCCACCGCCCTGCGCGAAGAAATATGCTATCTGCACCGATAGTGT\n-TGTACCACCACGGAACTTCGACGCCATTGCCGCGGCTCCAGTTACATCAACAGTGAGTGC\n-ATTCGCGCCTAAACTGGCCAAACTCCAGAGGCCGTAGCATTATCGCATTGGTTTAAGTAC\n-TGTTTGTTCCGAGATCGACACAGATTTTTCTGTACGTTTTTCCCCATGCGCGTAGCCCTG\n-GAAATCGATTGTCAGTCTGTAGCCGTAAAACGCGCAGCACCAATTGTCGTTATTGCCGTG\n-AACAACCGATATAAACACCGTATTCCATCGTCGCGTGATTTTTACTTCCGCTTCCAAGAA\n-TCACACTGTTGCCATAGTCATTGATGGTTAGCCTTATAACCGTTCGATTTTCAATGGTGA\n-ATGAAGTGGCTGTTAGGTGAAAGCTATTTGCCCAATAATGATGCCGTCAATCGTTACTTC\n-TTAATGTGCTGGCTGTGCCTAAAGTCAGCATTGGTATAGTTCACCAATTAAAGTAATGCC\n-GAGGCAGGAGGTTGACCAACCAACAAATCTACTGTGAGTTCCGGTAAAGCTGTCAGGGAG\n-TTGTTTTTGCCCTGAATAATGAATTTTCCTTTTTGCATTAAATTTTTCCAAGAAAGCCCC\n-CGTCGTTGAAACATTGACGTGAACCCCAATTTCAATTTTAACCCCCAAGGTTTTGATATT\n-TTTGCCCCAGGGGCCCCGTTTGGTTTCCTTGCGGGGGCCATTTCGTGGCGTGTTCGTGTG\n-TG\n' |
| b |
| diff -r cd256484eb1a -r 156e0da5b917 test-data/result3_scaffolds.fasta --- a/test-data/result3_scaffolds.fasta Fri Sep 28 19:18:54 2018 -0400 +++ b/test-data/result3_scaffolds.fasta Thu Nov 29 04:34:34 2018 -0500 |
| b |
| b'@@ -1,548 +1,667 @@\n >contig_1\n-ATCGAAATCAGTCGATACCGCAGTGATATATCGTGAACATGGGTGCAACGCTGAGTTACA\n-GACATGCGCCTGGGGAACGGTAGGGAAATGAACCTGGCTGAAGGCGGCTGTGACGCAAAG\n-TAAATTTGTCGATGATAACCGGCCGGTGAAGGTGAATAATGACGCGTAATTTCGTCAATG\n-ATTTGTCGGCAGACGTGAATATACCAGGCAGCTATCTAAAGCCTCATTCAGCAGTACGTT\n-TAGCGACATCTCGCGGGTGGCGGTTATAGCCATGGTGCGGTGTGGAATCCCGCATGGAAC\n-GCGTGCGCTGGTGTGAACAATCGTGCGTTCTGACCATCAACGATATAAACTGCGCTCGGC\n-GCAGTTTTCCGTTTACAGATGTTGAATAGGGAAAATCTGGCGGCAAAAAAAGCCCGACCA\n-GTTACGGCGGGAAAACCTCATCCTATGGGAGAACAATGCAATAATGAAAATTGCGGGGTT\n-ATCATCTCCCAGTCATATCCAATACTAACAATAAGTTACTCTACTCAACGCAGCATAAAC\n-ATTTGTTTTGTGCGTGGGAACACGCCTTAAGGTGGTAAAGGGCGAGTGGAATAGCAAATG\n-AGCGAGTATCAGCAAGAATACTCCGCGCTTTACCACAACGTGATGAGAGCGCATGAAAAC\n-TGCAAGCGCAGAGATAACTCGCCTGCTTGAGATAAATGCGTGCTTTTATCAGCGGCTTTA\n-TTTTCAGCTCTTACTGCTTCCGTAGGTCACGTTCAGCTCAAGAATAGAGAAATATCGCCA\n-TCTTTTGCATCAAGCTGTACGTCTGTACCGATCTCAGCATCAATTTGCTACGTATTTACA\n-AATGACCTCAGAATATCCTTTACGCACTGCGGCAGATAATGCGGTTCTGCATCGCTGCGA\n-CGGCGTCAGCAAGCAATAATCTGCAGCCGTTCTTTTAGCAATGTTGCTGTGTTTTTCTTG\n-CGCTGCGAGAGAAGAAATCGAGTAATGACCATAACTTATGCCTCTCGAACAAGCGTTGAG\n-GAAGCCTTTCTTCTCCTCTTCAATGACCAGCGGAAAAGGACGTGGTCTTCTCCCAACAGA\n-CGTTCTACTACGGTATCTGCGTATGGCTTTACCGCAGCGCGTTAATGTCGAGAATGACCG\n-GTTTCACACCCTGGTTAGAGCGCGCGCAATACTGATTGATCCTCTGGGATGCACGCCGAC\n-GAGTTCTGATGCGCAGGATCTCACAGCACATGCTTCGCATGCTCAGCATGTCACCTCGGC\n-TTACGCGGCCTGCGGTTATAGCGCGTTAACAGCAGGTGCATCTTTAATAGGCTCTTCGCG\n-CCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCCTAAAATTACGTCAGAGTCGCG\n-TACTGAGGAGACTCCGGTGTTGGTGGTAATAATGCAGCTTCGTCTGCAAAATAGAGTGCG\n-CATTAACGCACCGGTTTAAACAATCCTGCGGGGAGGCACAAACGATAAATTCAAAATCCA\n-GCGCTTTCAGATCATCAAGAACTTTGCGACCCTTCACGGCTGAGGTCATCTTTATCGCGT\n-GTTTGCGACTGCCGGCAGAATATAGAGATATTTTCAGTACGCTTTATCTTTAATTAACGT\n-AACGCCTGATTTAGCGTTGCATCGCCTGAATGACGTTGACGAAATCTAGGTAAACGACCC\n-GGCGTCACAACCCATTAATCAGGTCGAGAGTACGCAGGCCGATATCAAAATACTATCACG\n-ACAGTTTTGCTTTCCTTCTGGGCCAAACCAGTGGCGATGCCGCGCTGGGAGGTGTCTTAC\n-CAAACACTTTGCCCGATAAGTAACAACAATAATGCGTGCCATAAGAATTCCTTGTTAAAA\n-AGCCGATCAATTTAACGGTTGTAACGGTCAATAAGCGTTTTCGACTAACTGCAGTCGCGC\n-CGCTTTGCCATAAAATTCTGCTGCGGATTTGATCACTCAGCCAGTATTCACCTGCGCATG\n-GACACCAGTTCCGCCATGCAGGTTCGTACAAAATATTTGCGTTTCCCGGTCACGCACTTG\n-CCCCTGCCAGCGCACGACCGCGCATTCATGCCATATGACATGAATGTTCCCATCGGCATC\n-AAGTTCGGCCCCAGCGCCTAACCGTGCTTGTAACAATCAGATCACATTGTGCCGAGCATT\n-AATACGCTGCACCGGACGCACCGCGGGTCGTATCTATTAAACGCGTTTTTGTGACCGCGT\n-TGTATTTTTGCGCTGCGGCAGCCTGCGGTGTGTTGGCGCTGGCAACGTGGCGCTTTTTCC\n-CCTTTCCTTCCGTCAGGCATAGGCAGCCCATCTTTTCAATTTCGCTTTAAGTTGCGCATC\n-TTTGCAGCCACTACGCCAATAACCGCGGCAACGCGTTGCCGAAACCGCCTGTATGCATCG\n-CTGACAGGTTTACCGGTCTTCCAGTGCCTGACGTTGAGTACAACGGGCATGTTTTAAAAA\n-TGGCGGGGCCTGAGCGATTTGTCTTCCAGCGCCTGATGGACTAACCTTAGGTTCTGCCTC\n-ATGCAGATCGAAAAGCCCACAGATAAAGGGAAGCTACTGCCTTTTTCAAGCTGCGATTGG\n-CGTGTTTGACATCCTGGCCTTATCGCAATTAGCTATTAATCATCGCCACGCGCGCGATGA\n-TGTGCCGACGACTATATAGGCATGTTATAGTCTGGATTATTTTGCAGGCAAGTCACCCTC\n-CCATTTATTCAGAGTAAAAGTCGTATCTGTGATAAATGGCGCTGATTCATAGCTTAAAAA\n-ATCCCTTGTCAATCAACCCATTGCCGTCGTACCGGTTTGATTGTTCTTATTTACGCTTCC\n-TTTTTCCGCACCCTAATCGTGCACAGCATCTCCAGACCTGTTTAAATATCCAGTATGGAG\n-GGGCAAGTGTTATCACCACGCCAGCGCTTTCTTACTTTCCATTTTTTGCGCATGCATTAA\n-AGAACACGATCGCTTATCTTAATATCCGCCACAGAATTGCTCTATCATAGCAAACCGCAG\n-AAGACGTCTGATACTTCGGTCAGCGTCATCGTAACTCGTCAGGTCAGCGGGTTTTGATTA\n-CGCGATTGATGATGACATGACGCATAAGTGTCTGTACGCGTTGGCATTATCAGGATGTGC\n-TATGAATATATGATGCGTATTTTTATATATCGGTATTGTCAGGTGACACTGTGGGATGCC\n-ATGTTCTCATCAATGGCGTCTGGGAAATGACGCTGGCGGACTTCAATCTCGGCGTGCGGC\n-GTTGTTTGCGACGCCGTATATTTGTGTGAACTCAGTATGGGCATTGCCCAGAGTTAACAA\n-GCGAAATATCTCGGCGAGAAAAGCCGCTGAAAACCTTACAATCATACCAGGCTACGATCC\n-CAGCGAATTTACATCGCTACCGGTGTATTTGCGATGTTAAAGAAAAATTATGTCGTGATG\n-ATCGTTATTTTGGGTGTGGATGGTAGCGGAGTGGAAAAATCAATCAAACCACCACAAAGA\n-TGTTATTTATGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTTATTCGTCATTAACC\n-TCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGAGAGTCCCGTCGTTGA\n-CATTTACTTAATTTTGAATATCGACGTTTATATTTTTAGTTTTGTTTTTACGGGCGTCGT\n-TTCGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCCGT\n-GACTATCGAGTTCTGGGGAATATCTGGATAAATCAACTGGAATCATCGATTCTGGCCCGA\n-AGAGGTAAGTATCAGCGCCTTCATTAGAGATACTCTCACATGCACTTTCTGACCTTTTTG\n'..b'GTGATCTTGGCTTTCATCATGTCCAGGATGCCCTGCAGG\n+TCCTCATTCTGGAGCGTCGTGGTCAGTTCTGGCGAGCGATGCGGCGATCCTGATGGGACT\n+TCGCTCCCGCCCTTTGGGCCGGCACGCTGATGAAATCCATTGTCTTCAGGCTTGTGGCTG\n+TCGTGGAGACTGTAGTGGCCAGAGTCTCCACCTCCACAGCTGCACTGCAGTCGCTAGCTT\n+TCGGCGGCGGGGGGGCCTGCTTGCTCACCTCCCACTCCCTGGATTGGGGTTCCGACTCCT\n+CTTATGGGATCTCGATAGCCTACCACTCCTCCTAAACGGGTCGTTGGGGTCGGGGCACTG\n+CCCCCTGTGCTGTCCATCAGATATAAAGGGGGACTTTGGCTTGTTGGTCCCCAGCGCTCC\n+GTGGGAAATAGAACTAGCTTCAGTTCTTAGGTTATATTTAAAATTTTTGTTCAACTTAAT\n+TAGTTCAAATTTGAATTTGAATTCGAATTTCGCGCCCAACGAGCGCGCGGCCGAATGACG\n+ATCGCACCGCTGATCTGGCAACGCCAGTCTTACCAGCTCGTCGACTGCGAAAGGTTGGCA\n+ATGCTATCAGCTGTATTGTCTGATGCAGCTGATCTGATTTATTACCAGTTTACTGGATCA\n+CTCGTGAATTCGGAACGACACCGTGACGCTCAGAACGCGGCGCAAACCCCAGAGTGGATT\n+TGCGGGTTTATGTTGCAGTTTACGGCTGACCGGACTCGTATATGACGAAATTCGCGCAGC\n+GCAGCAAAAGACGTGCGAAATACGCGGGAACTCGATTCACTATCATGCCATAATGTGTGT\n+TGGTATTAGTGTGTGTGTGGAGTGAAGTAAGTCTCCAAAGTGTGTTTGATTGCGGGTAGA\n+CTGGGTTCTACGCATTATTGCAACGTTCGTTCTGCACATTAAGTTTTGATCGCCGAAGAA\n+GACAGACATGCCTCGCTCCCGAATTAAACGCGTCAGAAAACGTTACGACGACGGGTGAGA\n+GTGATGCTGAGTATAAAAGTGATTCAGATCCCACATACTTAATGCAAATAAGTTTATTTT\n+CAACTTTTTCTATTGTAAAATGATATTTTATGTCTATGTGCTTAATTCTCTTGTGGCAAG\n+TTGGGTTATTTGCAATACTAATGCAACCTGGACCTTTTAATTCTAGTTTAATTTCTACCA\n+ATAAAAACTTGAGCCATAAGGCTTCTCTAAAACCTTCAAATAAGGCCATGTAATCTGTCT\n+TCGGTGGATGAAGCTGCAACTGATTTTTGCTTCATTGTGTTCCATGAAATTAAACAACTT\n+TCAAACAGTTTAAATAAATATCCAGTAGTACTTCGTCTGTCTGTCTCATTTCCTGCCCAA\n+TCAGAATCAGCATGTCCAATAAGAATAATACTAAACTGTACACTTTTTCAATCTCAAATC\n+AACAGTTCCTTTTAAATGCCTTAAAACTCTTTTAAGGCATAGCCATAATTCCTTATTGTT\n+GTTATTCGAATATCGACTTAAAATACTTATTGATCAAGTTTCTACATGGTGCCTCACATG\n+ATTCTACAGATTGTAGAGCCTCATAGTTTAGTTTGCTTGGAAGAGGTGTACTAACTGCAT\n+TACAGTCTTCCATATTAAACTTTTCAACACATTCTTTATATATGCAGATTAACTGAGACA\n+TATCTGACTTTTATTTCTATCAATTTTAATTCCGATAAAATATCGAACTTCCTTCAAATA\n+AGTCATTTTAAATTTATTTAGAAGGTATGATTTAAATTTAGACCTAGTTTCGGATTTACT\n+AGTGGCAATTATTACATCGTCCACATATAACAAAATATAGATATTATCTAAGAATTTTCC\n+TTTATCTAATATAAATTAGATTTTCAAATACAACATCTTTTCGCACATTTTCAAAACTTC\n+AAACCAGCATCTTGCAGCTTGTTTACTGCATATTTTGCTTTATTAAGCTTTGCATTCTGC\n+ATTCTCATCGCAATATGGCAACCCTTTTGGAACCTTCATGTAGATTTCATCTTGCTCCAA\n+GAATGCTGTTCTCACATCCATACGATGGACTTGTAAATTTTATTGATTTGAAAGAGCCAA\n+AAAACCGAAACTGGAAATTCGTGCAGCTGGTGCAAATGTCTCATCATAATCAGTCACATA\n+TTCTTGTGTAAACCTCGTGCTACTAGCCGTGCTTTATGCTACTAAGTTTCCAAACTCATC\n+TTGTTAGTGCTACTAAAAACCCATTTACAATCTACTATGCTTTTATTATTAGGCTTCTGC\n+ACCAAACTCCACGTTTTATTTTCTGAATGTGAACCAAGTTCATCTTGTATAGCTTTTCCC\n+AAAAGATCTGTCATCCACGAAATTCAATTTCATCAAATCTATTGGGAATATCAATATCTA\n+TCGATAGTTTAGGTTTATCTTTGTCCAAGTTACGGGGTTGGACTGTCACCGCTCTCCGCT\n+CCCTTTACGCTCTCCGCTCTTCACCACAGAGTCTCCAAGGAGTCTCCGCTGCGCTTGGAA\n+GAGCCTAACTAGATAGAATAAGCACCAGTGTCAAAACTCATTTCGCAGAATAAATATACG\n+CCCGGTCGCGCTCAATTACGAAAGTCTAGTGTTCGCTTTTCTTCGAGATTCTTTTCAGCA\n+TATTTGGAAATTCCAGGACAGCACCCTACAACCCATCATTTTTTATTTCTTTCACTGCGT\n+CCTGATTTCTTACTCACTTTTGCTATCATTTTATTTCATCACCAGTTTCTTTAACTGGAT\n+CGGCATTCTTTAGACATGTGGAATTTTACTATGTTGTACTTTTTCTAGAATCAACAGATT\n+CATCATTTTCCACCATTGGAAAATCGAGGACTCTACATTATCTTTATTAAAAAGAATCAT\n+AAATACTTTTATGTTGAACCTTCGAGTCTTCTTCATGTTTTAATTCGTTTGTCATCTCGA\n+TCACTCGATCGTATCTCGCTTTCAAGGCCTCATCTCTTTTGAGACGCTGCTCATTTCTTA\n+AGAACTGAGCCAACTGCGAAACAGACCTAGAATGCCTAGCCCGGAACCGATATGTTCGGG\n+GTCGCTTGAAAAGGCAGAGTAACGACATATTTGCTGCACTCGTTTCTCGTGAGTCGTTGA\n+GAGAATTCTTCTCGCACGAGATCGGATTCTTTTGCAGCTTTGTTGGTATATGTCCTCGCA\n+GATTTCTGCTGAGGAGTTTGTCCAGTGAATTATCGTACGCGTGGGAGATCTGTGCCGAAA\n+GAGAAATTCTACTTGGGCTGGGCTGACACTGGCCCAGTTAGTACCCAGCGAAAGTATGGT\n+CTCTTGCCCGCCCCAAGAGAGAGCGCAGATGTTGGTTTTGTAACCCTCCAGAAGCACCGA\n+AGAGGAGGATTGCCAAATCCATGTGCGAAGAATTTCATTGGGCCCTGAAGCGAGTGCGGC\n+AAATATGTCGTTACTCTGCGCTTTTCGCGACCCAGTGCCTATCGGTTCCGGGCTGGGGCA\n+TTCTAGGTGCTGTTTGGCTCAGTTCTTGAGCTGGCATTAAAAGATGGGCTGTGAAAGCGA\n+GATACGATTCGGTGATCAGATGACGGCGAATTAAAACGCAGAAGAAGACTCGAAGGTTCA\n+ACATGAAATATTTTATGATTCTTTTAATAAAAGATAATGTAGAGTCGATTTTCCAATGGT\n+GGAAAATGATGAATCTGTTGATTCTAGAAAAATGTACAACATGATGAAATTCCACATGTC\n+TAAAGAATGCCGATCCAGTTAAAGAGCTGGTGATGAAATAAATGATAGCAGAAAGTGAAG\n+TAGAAATCAGACGCAGTGAAAGAAATAAAAAAATGATGGGTTGTAGGGAATCCTGGAATT\n+TTCAAATATGCTGAAAAGAAACTCTCGAAGAAGAACACTAGACTTTTCACC\n' |