| Previous changeset 5:dbe2b2204555 (2020-01-19) Next changeset 7:78608ec02d62 (2021-02-13) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/roary commit b65bd3e275828e8f4729c0f8211bc2bf6da71689" |
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modified:
roary.xml |
| b |
| diff -r dbe2b2204555 -r 15ac71df11a0 roary.xml --- a/roary.xml Sun Jan 19 04:37:17 2020 -0500 +++ b/roary.xml Mon Jun 29 08:40:27 2020 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="roary" name="Roary" version="3.13.0"> +<tool id="roary" name="Roary" version="3.13.0+galaxy0"> <description>the pangenome pipeline - Quickly generate a core gene alignment from gff3 files</description> <requirements> @@ -63,6 +63,7 @@ <option value="numpangene_rtab">Number of Genes in Pan Genome in Rtab format</option> <option value="numnew_rtab">Number of New Genes in Rtab format</option> <option value="numuniq_rtab">Number of Unique Genes in Rtab format</option> + <option value="pangenomeref">FASTA file which contains a single representative nucleotide sequence from each of the clusters in the pan genome (core and accessory)</option> </param> <section name="advanced" title="Advanced options" expanded="false"> @@ -123,6 +124,9 @@ <data format="txt" name="num_uniq_rtab" label="${tool.name} on ${on_string} Number of Unique Genes" from_work_dir="out/number_of_unique_genes.Rtab" > <filter>outputs and 'numuniq_rtab' in outputs</filter> </data> + <data format="fasta" name="pan_genome_ref" label="${tool.name} on ${on_string} pan-genome reference" from_work_dir="out/pan_genome_reference.fa" > + <filter>outputs and 'pangenomeref' in outputs</filter> + </data> </outputs> <tests> |