| Previous changeset 0:53eec20e8fb6 (2017-10-19) Next changeset 2:2b4526fdf7fb (2023-04-24) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_busco/ commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165" |
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modified:
data_manager/data_manager.py |
| b |
| diff -r 53eec20e8fb6 -r 15b97817550a data_manager/data_manager.py --- a/data_manager/data_manager.py Thu Oct 19 15:56:20 2017 -0400 +++ b/data_manager/data_manager.py Sun Nov 22 12:47:50 2020 +0000 |
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| @@ -50,13 +50,15 @@ data_manager_entry['name'] = args.name data_manager_entry['path'] = '.' data_manager_json = dict(data_tables=dict(busco=data_manager_entry)) - params = json.loads(open(args.output).read()) + with open(args.output) as fh: + params = json.load(fh) target_directory = params['output_data'][0]['extra_files_path'] os.mkdir(target_directory) output_path = os.path.abspath(os.path.join(os.getcwd(), 'busco')) for filename in os.listdir(workdir): shutil.move(os.path.join(output_path, filename), target_directory) - file(args.output, 'w').write(json.dumps(data_manager_json)) + with open(args.output, 'w') as fh: + json.dump(data_manager_json, fh, sort_keys=True) if __name__ == '__main__': |