| Previous changeset 17:b45b85d5c7ec (2020-09-29) Next changeset 19:b531acda966c (2020-10-07) |
|
Commit message:
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit fda35ff3ea8609c4bb5e1fd9e58ba70cd5b5a997-dirty" |
|
modified:
scanpy-find-cluster.xml |
| b |
| diff -r b45b85d5c7ec -r 15e8a4c60418 scanpy-find-cluster.xml --- a/scanpy-find-cluster.xml Tue Sep 29 14:07:52 2020 +0000 +++ b/scanpy-find-cluster.xml Wed Sep 30 11:12:27 2020 +0000 |
| [ |
| @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_find_cluster" name="Scanpy FindCluster" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@"> +<tool id="scanpy_find_cluster" name="Scanpy FindCluster" version="@TOOL_VERSION@+galaxy3" profile="@PROFILE@"> <description>based on community detection on KNN graph</description> <macros> <import>scanpy_macros2.xml</import> @@ -112,6 +112,19 @@ <output name="output_h5" file="find_cluster.h5" ftype="h5" compare="sim_size"/> <output name="output_txt" file="find_cluster.tsv" ftype="tsv"/> </test> + <test> + <param name="input_obj_file" value="compute_graph.h5"/> + <param name="input_format" value="anndata"/> + <param name="output_format" value="anndata"/> + <param name="output_txt" value="true"/> + <param name="default" value="false"/> + <param name="method" value="louvain"/> + <param name="resolution" value="1.0"/> + <param name="key_added" value="METHOD_RESOLUTION"/> + <param name="random_seed" value="0"/> + <output name="output_h5" file="louvain_1.0" ftype="h5" compare="sim_size"/> + <output name="output_txt" file="louvain_1.0.tsv" ftype="tsv"/> + </test> </tests> <help><![CDATA[ |