| Previous changeset 6:3889ecd44f20 (2018-01-02) Next changeset 8:f7d344dacfeb (2018-03-07) |
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Commit message:
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit d76f2040a05a5f8752cbfe9a8bc1ef9efae45c01 |
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modified:
hicCorrectMatrix.xml |
| b |
| diff -r 3889ecd44f20 -r 1612e9458940 hicCorrectMatrix.xml --- a/hicCorrectMatrix.xml Tue Jan 02 10:17:05 2018 -0500 +++ b/hicCorrectMatrix.xml Wed Jan 03 13:30:22 2018 -0500 |
| [ |
| @@ -1,4 +1,4 @@ -<tool id="hicexplorer_hiccorrectmatrix" name="@BINARY@" version="@WRAPPER_VERSION@.0"> +<tool id="hicexplorer_hiccorrectmatrix" name="@BINARY@" version="@WRAPPER_VERSION@.1"> <description>Runs Dekker's iterative correction over a hic matrix.</description> <macros> <token name="@BINARY@">hicCorrectMatrix</token> @@ -20,11 +20,7 @@ #if $mode.mode_selector == 'correct': --iterNum $mode.iterNum - #if $mode.outputFormat == 'h5' - --outFileName matrix.h5 - #elif $mode.outputFormat == 'cool' - --outFileName matrix.cool - #end if + --outFileName matrix.$mode.outputFormat #if $mode.filterThreshold_low and $mode.filterThreshold_large: --filterThreshold $mode.filterThreshold_low $mode.filterThreshold_large @@ -60,7 +56,9 @@ --xMax $mode.xMax #end if #end if - + #if $mode.mode_selector == 'correct': + && mv matrix.$mode.outputFormat matrix + #end if ]]> </command> <inputs> @@ -114,16 +112,14 @@ </inputs> <outputs> - <data name="outFileName_h5" from_work_dir="matrix.h5" format="h5"> - <filter>outputFormat == 'h5'</filter> + <data name="outFileName" from_work_dir="matrix" format="h5"> + <change_format> + <when input="mode.outputFormat" value="cool" format="cool" /> + </change_format> <filter>mode['mode_selector'] == "correct"</filter> </data> - <data name="outFileName_cool" from_work_dir="matrix.cool" format="cool"> - <filter>outputFormat == 'cool'</filter> - <filter>mode['mode_selector'] == "correct"</filter> - - </data> + <data name="diagnostic_plot" from_work_dir="diagnostic_plot.png" format="png"> <filter>mode['mode_selector'] == "diagnostic_plot"</filter> |