| Previous changeset 10:768883847008 (2020-02-03) Next changeset 12:6b7d31026d1c (2020-02-04) |
|
Commit message:
Uploaded |
|
modified:
RM_custom_search.py RM_custom_search.xml |
| b |
| diff -r 768883847008 -r 16150c85fb3a RM_custom_search.py --- a/RM_custom_search.py Mon Feb 03 06:44:58 2020 -0500 +++ b/RM_custom_search.py Tue Feb 04 07:39:32 2020 -0500 |
| [ |
| @@ -19,7 +19,10 @@ # extract only dirCLXXXX/reads.fas seq_list = [] for filein in z.namelist(): - if filein.lower().startswith("seqclust/clustering/clusters/dir_cl") and filein.endswith("reads.fas"): + c1 = filein.lower().startswith("seqclust/clustering/clusters/dir_cl") + c2 = filein.endswith("reads.fas") + c3 = filein.endswith("reads.fasta") # in newer RE2 versions + if c1 and (c2 or c3): outdir = filein.split("/")[3] outfile = outdir +"/reads.fas" source = z.open(filein) |
| b |
| diff -r 768883847008 -r 16150c85fb3a RM_custom_search.xml --- a/RM_custom_search.xml Mon Feb 03 06:44:58 2020 -0500 +++ b/RM_custom_search.xml Tue Feb 04 07:39:32 2020 -0500 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="RMsearch" name="RepeatMasker custom search" version="1.0.1"> +<tool id="RMsearch" name="RepeatMasker custom search" version="1.0.2"> <description>Scan clustering results using RepeatMasker against custom database of repeats</description> <requirements> |