| Previous changeset 5:147577841bb8 (2022-08-03) Next changeset 7:eae7ee167917 (2023-11-12) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/concoct commit 6bcf71ac8fae2a84117069dc00b3c4cac6d20fa5 |
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modified:
concoct.xml macros.xml |
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| diff -r 147577841bb8 -r 16672a3c9b65 concoct.xml --- a/concoct.xml Wed Aug 03 13:57:08 2022 +0000 +++ b/concoct.xml Sat Aug 26 02:42:23 2023 +0000 |
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| @@ -38,7 +38,7 @@ <param argument="--kmer_length" type="integer" min="0" value="4" label="Kmer length"/> <param argument="--length_threshold" type="integer" min="0" value="1000" label="Sequence length threshold" help="Contigs shorter than this value will not be included"/> <param argument="--read_length" type="integer" min="0" value="100" label="Read length for coverage"/> - <param argument="--total_percentage_pca" type="integer" min="0" value="100" label="Percentage of variance explained by the principal components for the combined data"/> + <param argument="--total_percentage_pca" type="integer" min="0" value="90" label="Percentage of variance explained by the principal components for the combined data"/> <param argument="--seed" type="integer" min="0" value="1" label="Seed for clustering" help="Zero value will use random seed"/> <param argument="--iterations" type="integer" min="0" value="500" label="Maximum number of iterations for the Variational Bayes Gaussian Mixture Models (VBGMM)"/> <param argument="--no_cov_normalization" type="boolean" truevalue="--no_cov_normalization" falsevalue="" checked="false" label="Skip normalization and only do log transorm of the coverage?" help="By default, the coverage is normalized for samples, then normalized for contigs and finally log transformed. By setting this flag you skip the normalization and only do log transorm of the coverage."/> @@ -90,7 +90,7 @@ </output> <output name="output_pca_transformed" ftype="csv"> <assert_contents> - <has_size value="834200" delta="10"/> + <has_size value="834200" delta="50"/> <has_text text="contig-21000001"/> </assert_contents> </output> @@ -127,7 +127,7 @@ </output> <output name="output_pca_transformed" ftype="csv"> <assert_contents> - <has_size value="834200" delta="10"/> + <has_size value="834200" delta="50"/> <has_text text="contig-21000001"/> </assert_contents> </output> |
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| diff -r 147577841bb8 -r 16672a3c9b65 macros.xml --- a/macros.xml Wed Aug 03 13:57:08 2022 +0000 +++ b/macros.xml Sat Aug 26 02:42:23 2023 +0000 |
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| @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">1.1.0</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <token name="@PROFILE@">21.01</token> <xml name="requirements"> <requirements> |