| Previous changeset 0:ff1ba9b75337 (2013-08-26) Next changeset 2:85bedbea8a12 (2016-10-05) |
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Commit message:
Uploaded tool help images. |
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modified:
pileup_parser.xml |
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added:
pileup_parser_help1.png pileup_parser_help2.png pileup_parser_help3.png pileup_parser_help4.png |
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| diff -r ff1ba9b75337 -r 1670f0565000 pileup_parser.xml --- a/pileup_parser.xml Mon Aug 26 15:14:34 2013 -0400 +++ b/pileup_parser.xml Tue Jun 03 12:40:39 2014 -0400 |
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| @@ -320,7 +320,7 @@ To call all variants (with no restriction by coverage) with quality above phred value of 20, we will need to set the parameters as follows: -.. image:: ${static_path}/images/pileup_parser_help1.png +.. image:: pileup_parser_help1.png Running the tool with these parameters will return:: @@ -336,7 +336,7 @@ In addition to calling variants, it is often useful to know the quality adjusted coverage. Running the tool with these parameters: -.. image:: ${static_path}/images/pileup_parser_help2.png +.. image:: pileup_parser_help2.png will report everything from the original file:: @@ -355,7 +355,7 @@ If you set the **Print total number of differences?** to **Yes** the tool will print an additional column with the total number of reads where a devinat base is above the quality threshold. So, seetiing parametrs like this: -.. image:: ${static_path}/images/pileup_parser_help3.png +.. image:: pileup_parser_help3.png will produce this:: @@ -371,7 +371,7 @@ Setting **Print quality and base string?** to **Yes** as shown here: -.. image:: ${static_path}/images/pileup_parser_help4.png +.. image:: pileup_parser_help4.png will produce this:: |
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| diff -r ff1ba9b75337 -r 1670f0565000 pileup_parser_help1.png |
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| Binary file pileup_parser_help1.png has changed |
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| diff -r ff1ba9b75337 -r 1670f0565000 pileup_parser_help2.png |
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| Binary file pileup_parser_help2.png has changed |
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| diff -r ff1ba9b75337 -r 1670f0565000 pileup_parser_help3.png |
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| Binary file pileup_parser_help3.png has changed |
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| diff -r ff1ba9b75337 -r 1670f0565000 pileup_parser_help4.png |
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| Binary file pileup_parser_help4.png has changed |
