| Previous changeset 0:106dc0bf83c6 (2014-08-14) Next changeset 2:e76f203fc135 (2014-08-14) |
|
Commit message:
Uploaded |
|
modified:
tool_dependencies.xml vt_normalize.xml |
| b |
| diff -r 106dc0bf83c6 -r 16f7587ab084 tool_dependencies.xml --- a/tool_dependencies.xml Thu Aug 14 07:41:51 2014 -0400 +++ b/tool_dependencies.xml Thu Aug 14 09:58:02 2014 -0400 |
| b |
| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="vt" version="5c735ab14b5603d9f14da6ee0e63d86ba3779934"> - <repository changeset_revision="91635ed3dceb" name="package_vt_5c735ab14b5603d9f14da6ee0e63d86ba3779934" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="vt" version="5c735ab14b5603d9f14da6ee0e63d86ba3779934"> + <repository changeset_revision="294fe74bded6" name="package_vt_5c735ab14b5603d9f14da6ee0e63d86ba3779934" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> |
| b |
| diff -r 106dc0bf83c6 -r 16f7587ab084 vt_normalize.xml --- a/vt_normalize.xml Thu Aug 14 07:41:51 2014 -0400 +++ b/vt_normalize.xml Thu Aug 14 09:58:02 2014 -0400 |
| [ |
| @@ -11,7 +11,7 @@ vt @BINARY@ -o "${ outfile }" ##-q do not print options and summary [] - -w window size for local sorting of variants [10000] + -w $window #if str( $intervals_file ) != 'None': -I "${intervals_file}" @@ -20,7 +20,7 @@ ##-i intervals [] #if $reference_source.reference_source_selector != "history": - -r "${reference_source.reference_genome.fields.path}"' + -r "${reference_source.reference_genome.fields.path}" #else: -r "${reference_source.reference_genome}" #end if |