| Previous changeset 24:fb6cc7bc24df (2024-02-03) Next changeset 26:e578621acb13 (2024-02-03) |
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Commit message:
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 50ecae3ea703a1b04501cc44f0d1fa6d714a6cc9 |
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modified:
jbrowse2.py |
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| diff -r fb6cc7bc24df -r 172acf9c7a53 jbrowse2.py --- a/jbrowse2.py Sat Feb 03 11:49:56 2024 +0000 +++ b/jbrowse2.py Sat Feb 03 22:07:55 2024 +0000 |
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| @@ -459,9 +459,13 @@ genome_name # first one for all tracks - other than paf ) self.genome_firstcontig = None - fl = open(fapath, "r").readline().strip().split(">", 1) + fl = open(fapath, "r").readline().strip().split(">") if len(fl) > 1: - self.genome_firstcontig = fl[1].split().strip() + fl = fl[1] + if len(fl.split()) > 1: + self.genome_firstcontig = fl.split()[0].strip() + else: + self.genome_firstcontig = fl if self.config_json.get("assemblies", None): self.config_json["assemblies"] += assemblies else: |