| Previous changeset 14:9d540c67d888 (2014-06-19) Next changeset 16:687a1b9e97b5 (2014-06-19) |
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Commit message:
Uploaded |
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modified:
tool_dependencies.xml |
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| diff -r 9d540c67d888 -r 176476c2ce6f tool_dependencies.xml --- a/tool_dependencies.xml Thu Jun 19 10:30:16 2014 -0400 +++ b/tool_dependencies.xml Thu Jun 19 10:39:06 2014 -0400 |
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| @@ -8,14 +8,14 @@ <actions> <!-- <action type="shell_command">git clone https://github.com/genome/pindel.git pindel</action> --> <action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action> - <!-- <action type="shell_command">ls</action> - <action type="move_directory_files"> + <action type="shell_command">ls</action> + <!-- <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> <action type="shell_command">unzip pindel-master.zip -d pindel</action> <action type="shell_command">cd master</action> --> - <action type="shell_command">make all SAMTOOLS=~/samtools</action> + <action type="shell_command">make all SAMTOOLS=~/samtools THREADS=2</action> <!-- <action type="shell_command">./INSTALL ~/samtools</action> --> <action type="move_file"> <source>pindel</source> |