| Previous changeset 8:04892b463957 (2024-05-30) Next changeset 10:cf061712a184 (2024-09-16) |
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Commit message:
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit b88eaca14b030fc0023989f3c83479e4975d172a |
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modified:
macros.xml recetox_aplcms_merge_known_table.xml test-data/peak_table_galaxy.parquet test-data/remove_noise_docker.parquet |
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added:
test-data/remove_noise_docker_threshold.parquet |
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| diff -r 04892b463957 -r 17a48d0a80f4 macros.xml --- a/macros.xml Thu May 30 14:52:51 2024 +0000 +++ b/macros.xml Thu Aug 01 10:57:55 2024 +0000 |
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| @@ -1,5 +1,5 @@ <macros> - <token name="@TOOL_VERSION@">0.12.0</token> + <token name="@TOOL_VERSION@">0.13.2</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">r-recetox-aplcms</requirement> @@ -66,6 +66,8 @@ The recommended value is the machine's nominal accuracy level (e.g. for FTMS, it is 10)." /> <param name="baseline_correct" type="float" value="0" label="Baseline correction [unit of signal intensity]" help="After grouping the observations, the highest intensity in each group is found. If the highest is lower than this value, the entire group will be deleted." /> + <param name="grouping_threshold" type="float" min="0" value="Inf" label="Grouping Threshold [unit corresponds to the retention time]" + help="Maximum empty space between section of the chromatogram for splitting EICs" /> <param name="intensity_weighted" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="Weight intensity" help="Whether to weight the local density by signal intensities in initial peak detection." /> </xml> |
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| diff -r 04892b463957 -r 17a48d0a80f4 recetox_aplcms_merge_known_table.xml --- a/recetox_aplcms_merge_known_table.xml Thu May 30 14:52:51 2024 +0000 +++ b/recetox_aplcms_merge_known_table.xml Thu Aug 01 10:57:55 2024 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="recetox_aplcms_merge_known_table" name="recetox-aplcms - merge known table" version="@TOOL_VERSION@+galaxy2" profile="21.09"> +<tool id="recetox_aplcms_merge_known_table" name="recetox-aplcms - merge known table" version="@TOOL_VERSION@+galaxy0" profile="21.09"> <description>join knowledge from aligned features and known table.</description> <macros> <import>macros.xml</import> |
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| diff -r 04892b463957 -r 17a48d0a80f4 test-data/peak_table_galaxy.parquet |
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| Binary file test-data/peak_table_galaxy.parquet has changed |
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| diff -r 04892b463957 -r 17a48d0a80f4 test-data/remove_noise_docker.parquet |
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| Binary file test-data/remove_noise_docker.parquet has changed |
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| diff -r 04892b463957 -r 17a48d0a80f4 test-data/remove_noise_docker_threshold.parquet |
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| Binary file test-data/remove_noise_docker_threshold.parquet has changed |