| Previous changeset 2:e38af83df163 (2020-01-13) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit 25200b2c00364b3d371c14cb4624b246446e548b |
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modified:
qualimap_macros.xml qualimap_multi_bamqc.xml |
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| diff -r e38af83df163 -r 17b35d23731f qualimap_macros.xml --- a/qualimap_macros.xml Mon Jan 13 13:03:39 2020 -0500 +++ b/qualimap_macros.xml Thu Jul 11 14:42:25 2024 +0000 |
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| @@ -1,5 +1,6 @@ <macros> - <token name="@VERSION@">2.2.2d</token> + <token name="@VERSION@">2.3</token> + <token name="@VERSION_SUFFIX@">0</token> <xml name="requirements"> <requirements> @@ -7,7 +8,11 @@ <yield /> </requirements> </xml> - + <xml name="bio_tools"> + <xrefs> + <xref type="bio.tools">qualimap</xref> + </xrefs> + </xml> <xml name="version_command"> <version_command>qualimap --help | grep 'QualiMap v.' | cut -d '.' -f 2-</version_command> </xml> |
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| diff -r e38af83df163 -r 17b35d23731f qualimap_multi_bamqc.xml --- a/qualimap_multi_bamqc.xml Mon Jan 13 13:03:39 2020 -0500 +++ b/qualimap_multi_bamqc.xml Thu Jul 11 14:42:25 2024 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="qualimap_multi_bamqc" name="QualiMap Multi-Sample BamQC" version="@VERSION@"> +<tool id="qualimap_multi_bamqc" name="QualiMap Multi-Sample BamQC" version="@VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05"> <macros> <import>qualimap_macros.xml</import> <xml name="test_collection"> @@ -16,6 +16,7 @@ </collection> </xml> </macros> + <expand macro="bio_tools"/> <expand macro="requirements" /> <expand macro="version_command" /> <command detect_errors="exit_code"><![CDATA[ @@ -82,9 +83,7 @@ <when value="individual"> <repeat name="bam_qc_data" default="2" min="2" title="BAM QC data to combine"> - <param name="bam_qc_input" type="data_collection" collection_type="list" format="txt" - label="Single-sample BAM QC data" - help="" /> + <param name="bam_qc_input" type="data_collection" format="txt" label="Single-sample BAM QC data" help="" collection_type="list" /> <param name="sample_name" type="text" label="Name to use for this dataset" help="This is the name that will be used for this dataset throughout the Qualimap report. Default: Name of the raw data collection in the history" /> @@ -97,9 +96,7 @@ </param> <repeat name="bam_qc_data" default="1" min="1" title="Data associated with this group"> - <param name="bam_qc_input" type="data_collection" collection_type="list" format="txt" multiple="true" - label="Single-sample BAM QC data" - help="" /> + <param name="bam_qc_input" type="data_collection" format="txt" label="Single-sample BAM QC data" help="" collection_type="list" multiple="true" /> </repeat> </repeat> </when> |