| Previous changeset 5:39416af5d0bc (2013-06-24) Next changeset 7:5ad387477181 (2013-06-24) |
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Commit message:
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modified:
tool_dependencies.xml |
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| diff -r 39416af5d0bc -r 186c754d47a4 tool_dependencies.xml --- a/tool_dependencies.xml Mon Jun 24 12:46:59 2013 -0400 +++ b/tool_dependencies.xml Mon Jun 24 14:04:26 2013 -0400 |
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| @@ -1,48 +1,9 @@ <?xml version="1.0"?> <tool_dependency> <package name="SearchGUI" version="1.13.1"> - <install version="1.0"> - <actions> - <action type="download_by_url">http://searchgui.googlecode.com/files/SearchGUI-1.13.1_mac_and_linux.zip</action> - <action type="shell_command">tar -xf SearchGUI-1.13.1_mac_and_linux.tar</action> - <action type="shell_command">cd SearchGUI-1.13.1_mac_and_linux</action> - <action type="shell_command">chmod -R o+w resources</action> - <action type="move_directory_files"> - <source_directory>.</source_directory> - <destination_directory>$INSTALL_DIR/</destination_directory> - </action> - <action type="shell_command">mkdir -p $BIN_DIR</action> - <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> - </action> - </actions> - </install> - <readme> - This package downloads and installs the SearchGUI scripts develped as part of the Peptideshaker tool. - (https://github.com/jmchilton/peptide-shaker). - - </readme> - </package> - + <repository toolshed="http://toolshed.g2.bx.psu.edu" name="searchgui" owner="galaxyp" changeset_revision="57249f07debd" prior_installation_required="True"/> + </package> <package name="PeptideShaker" version="0.20.1"> - <install version="1.0"> - <actions> - <action type="download_by_url">http://peptide-shaker.googlecode.com/files/PeptideShaker-0.20.1.zip</action> - <action type="shell_command">chmod -R o+w resources</action> - <action type="move_directory_files"> - <source_directory>.</source_directory> - <destination_directory>$INSTALL_DIR/</destination_directory> - </action> - <action type="shell_command">mkdir -p $BIN_DIR</action> - <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> - </action> - </actions> - </install> - <readme> - This package downloads and installs the peptideshaker tool as a part of the peptideshaker framework. - (https://github.com/jmchilton/peptide-shaker). - - </readme> + <repository toolshed="http://toolshed.g2.bx.psu.edu" name="peptideshaker_0201" owner="galaxyp" changeset_revision="a92db19b2daa" prior_installation_required="True"/> </package> </tool_dependency> |