| Previous changeset 0:cc02b208f3a4 (2022-09-14) Next changeset 2:db57bc3b57af (2024-03-18) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/red commit d0d15a68ae93d7557efcafaed75be750fec946a4 |
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modified:
red.xml |
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added:
test-data/small.bed |
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| diff -r cc02b208f3a4 -r 18a46265455b red.xml --- a/red.xml Wed Sep 14 12:02:55 2022 +0000 +++ b/red.xml Thu Sep 15 10:07:47 2022 +0000 |
| [ |
| @@ -2,7 +2,7 @@ <description>repeat masking</description> <macros> <token name="@TOOL_VERSION@">2018.09.10</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> </macros> <requirements> <requirement type="package" version="@TOOL_VERSION@">red</requirement> @@ -15,6 +15,8 @@ Red -gnm input/ -msk output/ +-rpt output/ +-frm 2 -cor \${GALAXY_SLOTS:-1} ]]></command> <inputs> @@ -22,11 +24,13 @@ </inputs> <outputs> <data format="fasta" name="masked" from_work_dir="output/genome.msk" /> + <data format="bed" name="bed" from_work_dir="output/genome.bed" /> </outputs> <tests> <test> <param name="input" value="small.fa" /> <output name="masked" file="small.msk" /> + <output name="bed" file="small.bed" /> </test> </tests> <help><![CDATA[ |
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| diff -r cc02b208f3a4 -r 18a46265455b test-data/small.bed --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/small.bed Thu Sep 15 10:07:47 2022 +0000 |
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| @@ -0,0 +1,5 @@ +scaffold_1 612 632 +scaffold_1 4860 4873 +scaffold_1 10619 10633 +scaffold_1 11980 11993 +scaffold_1 12005 12050 |