| Previous changeset 106:6de08f44e551 (2020-11-28) Next changeset 108:e878bfc6b80c (2020-11-29) |
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Commit message:
Uploaded |
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modified:
toolfactory/rgToolFactory2.py |
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| diff -r 6de08f44e551 -r 18e616939a91 toolfactory/rgToolFactory2.py --- a/toolfactory/rgToolFactory2.py Sat Nov 28 00:50:29 2020 +0000 +++ b/toolfactory/rgToolFactory2.py Sat Nov 28 02:52:24 2020 +0000 |
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| @@ -725,8 +725,6 @@ slogl = str(rlog).split("\\n") slog = "\n".join(slogl) tout.write(f"## got rlog {slog} from {cl}\n") - - dgroup = grp.getgrnam("docker")[2] if os.path.exists(self.tlog): tout = open(self.tlog, "a") else: @@ -749,15 +747,13 @@ user="biodocker", volumes={f"{tvolname}": {"bind": "/toolfactory", "mode": "rw"}}, ) - cl = f"groupmod -g {dgroup} docker" - prun(container, tout, cl, user="root") cl = f"mkdir -p {destdir}" prun(container, tout, cl, user="root") cl = f"rm -rf {destdir}/*" prun(container, tout, cl, user="root") ptestpath = os.path.join(destdir, "tfout", xreal) self.copy_to_container(self.tooloutdir, destdir, container) - cl = "chmod -R a+rwx /toolfactory" + cl = "chown -R biodocker /toolfactory" prun(container, tout, cl, user="root") rlog = container.exec_run(f"ls -la {destdir}") ptestcl = f"planemo test --update_test_data --no_cleanup --test_data {destdir}/tfout/test-data --galaxy_root /home/biodocker/galaxy-central {ptestpath}" |