| Previous changeset 0:1fbe84e8a740 (2021-01-27) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/strelka commit 8e20575721a463931a4b9fbbe905d90cc2863575" |
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modified:
strelka_germline.xml |
| b |
| diff -r 1fbe84e8a740 -r 19481653a22f strelka_germline.xml --- a/strelka_germline.xml Wed Jan 27 14:48:23 2021 +0000 +++ b/strelka_germline.xml Tue Mar 02 17:46:39 2021 +0000 |
| b |
| @@ -179,7 +179,7 @@ </section> <output name="out_variants" ftype="vcf_bgzip" file="variants_test2.vcf" decompress="true" compare="diff" lines_diff="8" /> </test> - <!-- #3; input bam, no defaults --> + <!-- #3; input bam, no defaults (note without s_e_e (genome) output seem not deterministic --> <test expect_num_outputs="2"> <param name="bam" value="sample1.cram,sample2.cram"/> <conditional name="ref_cond"> @@ -208,12 +208,14 @@ </assert_contents> </output> <output_collection name="out_genome" type="list" count="2"> - <element name="S1" ftype="vcf_bgzip"> + <!-- assertions are applied to compressed output (even with decomress true) + https://github.com/galaxyproject/galaxy/issues/11521 + <element name="S1" ftype="vcf_bgzip" decompress="true"> <assert_contents> - <has_n_lines n="219"/> - <has_line_matching expression="demo20	4101	.+"/> + <has_n_lines n="139"/> + <has_line_matching expression="demo20	.+"/> </assert_contents> - </element> + </element> --> </output_collection> </test> </tests> |