| Previous changeset 5:f5a5a2b39ff2 (2021-03-25) Next changeset 7:eca7ac1eb423 (2023-10-23) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 88d7f81768f05f490f444b646f47241cf2547b44" |
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modified:
lastal.xml lastdb.xml lastsplit.xml lasttrain.xml macros_last.xml maf-convert.xml |
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| diff -r f5a5a2b39ff2 -r 19c265784f35 lastal.xml --- a/lastal.xml Thu Mar 25 20:53:27 2021 +0000 +++ b/lastal.xml Sat Nov 27 10:12:45 2021 +0000 |
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| @@ -1,13 +1,13 @@ -<tool id="last_al" name="LASTal" version="@LAST_CONDA_VERSION@+galaxy0" profile="20.01"> +<tool id="last_al" name="LASTal" version="@TOOL_VERSION@+galaxy1" profile="20.01"> <description>finds local alignments between query sequences, and reference sequences.</description> - + <expand macro="bio_tools"/> <macros> <import>macros_last.xml</import> </macros> <requirements> - <requirement type="package" version="@LAST_CONDA_VERSION@">last</requirement> + <requirement type="package" version="@TOOL_VERSION@">last</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ @@ -77,6 +77,7 @@ -w $lastal.misc_opt.w -u $lastal.misc_opt.u -g $lastal.misc_opt.g + -G $lastal.misc_opt.G -P \${GALAXY_SLOTS:-1} |
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| diff -r f5a5a2b39ff2 -r 19c265784f35 lastdb.xml --- a/lastdb.xml Thu Mar 25 20:53:27 2021 +0000 +++ b/lastdb.xml Sat Nov 27 10:12:45 2021 +0000 |
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| @@ -1,13 +1,13 @@ -<tool id="last_db" name="LASTdb" version="@LAST_CONDA_VERSION@+galaxy0" profile="20.01"> +<tool id="last_db" name="LASTdb" version="@TOOL_VERSION@+galaxy0" profile="20.01"> <description>prepares sequences for subsequent comparison and alignment using lastal.</description> - + <expand macro="bio_tools"/> <macros> <import>macros_last.xml</import> </macros> <requirements> - <requirement type="package" version="@LAST_CONDA_VERSION@">last</requirement> + <requirement type="package" version="@TOOL_VERSION@">last</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ |
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| diff -r f5a5a2b39ff2 -r 19c265784f35 lastsplit.xml --- a/lastsplit.xml Thu Mar 25 20:53:27 2021 +0000 +++ b/lastsplit.xml Sat Nov 27 10:12:45 2021 +0000 |
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| @@ -1,13 +1,13 @@ -<tool id="last_split" name="LAST-split" version="@LAST_CONDA_VERSION@+galaxy0" profile="20.01"> +<tool id="last_split" name="LAST-split" version="@TOOL_VERSION@+galaxy0" profile="20.01"> <description>finds "split alignments" (typically for DNA) or "spliced alignments" (typically for RNA).</description> - + <expand macro="bio_tools"/> <macros> <import>macros_last.xml</import> </macros> <requirements> - <requirement type="package" version="@LAST_CONDA_VERSION@">last</requirement> + <requirement type="package" version="@TOOL_VERSION@">last</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ |
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| diff -r f5a5a2b39ff2 -r 19c265784f35 lasttrain.xml --- a/lasttrain.xml Thu Mar 25 20:53:27 2021 +0000 +++ b/lasttrain.xml Sat Nov 27 10:12:45 2021 +0000 |
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| @@ -1,13 +1,13 @@ -<tool id="last_train" name="LAST-train" version="@LAST_CONDA_VERSION@+galaxy0" profile="20.01"> +<tool id="last_train" name="LAST-train" version="@TOOL_VERSION@+galaxy0" profile="20.01"> <description>finds the rates (probabilities) of insertion, deletion, and substitutions between two sets of sequences.</description> - + <expand macro="bio_tools"/> <macros> <import>macros_last.xml</import> </macros> <requirements> - <requirement type="package" version="@LAST_CONDA_VERSION@">last</requirement> + <requirement type="package" version="@TOOL_VERSION@">last</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ |
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| diff -r f5a5a2b39ff2 -r 19c265784f35 macros_last.xml --- a/macros_last.xml Thu Mar 25 20:53:27 2021 +0000 +++ b/macros_last.xml Sat Nov 27 10:12:45 2021 +0000 |
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| @@ -1,5 +1,5 @@ <macros> - <token name="@LAST_CONDA_VERSION@">1205</token> + <token name="@TOOL_VERSION@">1205</token> <token name="@LAST_HELP@"><![CDATA[ Documentation : http://last.cbrc.jp/ @@ -20,6 +20,11 @@ - Train alignment parameters for unusual kinds of sequence (e.g. nanopore). ]]></token> + <xml name="bio_tools"> + <xrefs> + <xref type="bio.tools">last</xref> + </xrefs> + </xml> <xml name="citations"> <citation type="doi">10.1101/gr.113985.110</citation> </xml> |
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| diff -r f5a5a2b39ff2 -r 19c265784f35 maf-convert.xml --- a/maf-convert.xml Thu Mar 25 20:53:27 2021 +0000 +++ b/maf-convert.xml Sat Nov 27 10:12:45 2021 +0000 |
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| @@ -1,13 +1,13 @@ -<tool id="last_maf_convert" name="MAF-convert" version="@LAST_CONDA_VERSION@+galaxy0" profile="20.01"> +<tool id="last_maf_convert" name="MAF-convert" version="@TOOL_VERSION@+galaxy0" profile="20.01"> <description>read MAF-format alignments and write them in another format.</description> - + <expand macro="bio_tools"/> <macros> <import>macros_last.xml</import> </macros> <requirements> - <requirement type="package" version="@LAST_CONDA_VERSION@">last</requirement> + <requirement type="package" version="@TOOL_VERSION@">last</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ |