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prohits_dotplot_generator/Dotplot_Release.tar.gz prohits_dotplot_generator/GNU Free Documentation License.txt prohits_dotplot_generator/ProHits_DotPlot_Generator.py prohits_dotplot_generator/ProHits_DotPlot_Generator.xml prohits_dotplot_generator/test_files/SC_SAINT_list.txt prohits_dotplot_generator/tool_dependencies.xml |
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test_files/SC_SAINT_list.txt |
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| diff -r 7928f149bb99 -r 19fb3846b0cf prohits_dotplot_generator/Dotplot_Release.tar.gz |
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| diff -r 7928f149bb99 -r 19fb3846b0cf prohits_dotplot_generator/GNU Free Documentation License.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/prohits_dotplot_generator/GNU Free Documentation License.txt Tue Mar 15 16:45:20 2016 -0400 |
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| b'@@ -0,0 +1,451 @@\n+\r\n+ GNU Free Documentation License\r\n+ Version 1.3, 3 November 2008\r\n+\r\n+\r\n+ Copyright (C) 2000, 2001, 2002, 2007, 2008 Free Software Foundation, Inc.\r\n+ <http://fsf.org/>\r\n+ Everyone is permitted to copy and distribute verbatim copies\r\n+ of this license document, but changing it is not allowed.\r\n+\r\n+0. PREAMBLE\r\n+\r\n+The purpose of this License is to make a manual, textbook, or other\r\n+functional and useful document "free" in the sense of freedom: to\r\n+assure everyone the effective freedom to copy and redistribute it,\r\n+with or without modifying it, either commercially or noncommercially.\r\n+Secondarily, this License preserves for the author and publisher a way\r\n+to get credit for their work, while not being considered responsible\r\n+for modifications made by others.\r\n+\r\n+This License is a kind of "copyleft", which means that derivative\r\n+works of the document must themselves be free in the same sense. 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| diff -r 7928f149bb99 -r 19fb3846b0cf prohits_dotplot_generator/ProHits_DotPlot_Generator.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/prohits_dotplot_generator/ProHits_DotPlot_Generator.py Tue Mar 15 16:45:20 2016 -0400 |
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| @@ -0,0 +1,56 @@ +####################################################################################### +# Python-code: Dotplot Runner +# Author: Adam L Borne +# Contributers: Paul A Stewart, Brent Kuenzi +####################################################################################### +# This script runs the dotplot program found at http://prohitstools.mshri.on.ca/. +####################################################################################### +# Copyright (C) Adam Borne. +# Permission is granted to copy, distribute and/or modify this document +# under the terms of the GNU Free Documentation License, Version 1.3 +# or any later version published by the Free Software Foundation; +# with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. +# A copy of the license is included in the section entitled "GNU +# Free Documentation License". +####################################################################################### +## REQUIRED INPUT ## + +# 1) list_file: SaintExpress output file. +# 2) FDR1: Primary false discovery rate. (default = 0.01) +# 3) FDR2: Secondary false discovery rate. (default = 0.025) +# 4) spec_max: Maximum spectral count. (default = 50) +####################################################################################### +import os +import os +import sys + + +FDR1 = sys.argv[2] +FDR2 = sys.argv[3] +spec_max = sys.argv[4] +os.rename(sys.argv[1], "saint_input.txt") +ins_path = sys.argv[9] + +dirs_list = [] +for (dirpath, dirnames, filename) in os.walk(str(ins_path)): + dirs_list.extend(dirnames) + break +if r"Dotplot_Release" in dirs_list: + pass +else: + cmd = r"tar -xvf /Dotplot_Release.tar.gz " + str(ins_path) + "/Dotplot_Release.tar.gz" + os.system(cmd) + + +cmd = (str(ins_path) + r"Dotplot_Release/dotplot.bash -f saint_input.txt" + r" -c b -s " + str(FDR1) + + r" -t " + str(FDR2) + " -m " + str(spec_max)) +os.system(cmd) + +cmd1 = r"cp -a ./Output_saint_input/. ." +os.system(cmd1) + +os.rename("saint_input.txt", str(sys.argv[1])) +os.rename('dotplot.pdf', str(sys.argv[5])) +os.rename('bait2bait.pdf', str(sys.argv[6])) +os.rename('estimated.pdf', str(sys.argv[7])) +os.rename('stats.pdf', str(sys.argv[8])) \ No newline at end of file |
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| diff -r 7928f149bb99 -r 19fb3846b0cf prohits_dotplot_generator/ProHits_DotPlot_Generator.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/prohits_dotplot_generator/ProHits_DotPlot_Generator.xml Tue Mar 15 16:45:20 2016 -0400 |
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| @@ -0,0 +1,62 @@ +<tool id="ProHits_DotPlot_Generator" name="ProHits DotPlot Generator"> + <description></description> + <command interpreter="python">ProHits_DotPlot_Generator.py $saint_file $FDR1 $FDR2 $spec_max $dotplot $heatmap $estimated $stats</command> + <requirements> + <requirement type="set_environment">INSTALL_RUN_PATH</requirement> + </requirements> + <inputs> + <param format="txt" name="saint_file" type="data" label="SAINT Output"/> + <param type="float" name="FDR1" label="False Discovery Rate 1" value="0.01"/> + <param type="float" name="FDR2" label="False Discovery Rate 2" value="0.025"/> + <param type="integer" name="spec_max" label="Maximum spectral count" value="50"/> + </inputs> + <outputs> + <data format="pdf" name="dotplot" label="DotPlot" /> + <data format="pdf" name="heatmap" label="Heatmap" /> + <data format="pdf" name="estimated" label="Estimated" /> + <data format="pdf" name="stats" label="Stats" /> + </outputs> + <stdio> + <regex match="Error|error" + source="stdout" + level="fatal" + description="Unknown error"/> + <regex match="Error|error" + source="stderr" + level="fatal" + description="Unknown error"/> + <regex match="Error: bad bait" + source="stdout" + level="fatal" + description="Error: bad bait"/> + </stdio> + + <tests> + <test> + <param name="input" value="fa_gc_content_input.fa"/> + <output name="out_file1" file="fa_gc_content_output.txt"/> + </test> + </tests> + <help> +**Running ProHits DotPlot** + +This runs the biclustering version of the DotPlot tool found at http://prohitstools.mshri.on.ca/. A more interactive version can be found at http://prohits-viz.lunenfeld.ca/. This script will take a long time to run. + +INPUTS: + +Saint Output: SAINTexpress generated "list.txt" file. + +Primary False Discovery Rate + +Secondary False Discovery Rate + +Maximum Spectral Count + +------ + +**Please cite** + + * Knight, J.D., Liu, G., Zhang, J., Pasculescu, A., Choi, H., and Gingras, A.-C. (2014) A web-tool for visualizing quantitative protein-protein interaction data. Proteomics, in press. PMID:25422071. + + </help> +</tool> \ No newline at end of file |
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| diff -r 7928f149bb99 -r 19fb3846b0cf prohits_dotplot_generator/test_files/SC_SAINT_list.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/prohits_dotplot_generator/test_files/SC_SAINT_list.txt Tue Mar 15 16:45:20 2016 -0400 |
| b |
| b'@@ -0,0 +1,473 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|
| b |
| diff -r 7928f149bb99 -r 19fb3846b0cf prohits_dotplot_generator/tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/prohits_dotplot_generator/tool_dependencies.xml Tue Mar 15 16:45:20 2016 -0400 |
| b |
| @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <set_environment version="1.0"> + <environment_variable name="INSTALL_RUN_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> + </set_environment> +</tool_dependency> \ No newline at end of file |
| b |
| diff -r 7928f149bb99 -r 19fb3846b0cf test_files/SC_SAINT_list.txt --- a/test_files/SC_SAINT_list.txt Tue Mar 15 16:39:57 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,473 +0,0 @@\n-Bait\tPrey\tPreyGene\tSpec\tSpecSum\tAvgSpec\tNumReplicates\tctrlCounts\tAvgP\tMaxP\tTopoAvgP\tTopoMaxP\tSaintScore\tlogOddsScore\tFoldChange\tBFDR\tboosted_by\n-WT_EGFR\tEGFR_HUMAN\tEGFR\t67|52|45|55\t219\t54.75\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t68.87\t547.50\t0.00\t\n-WT_EGFR\tERBB2_HUMAN\tERBB2\t4|5|3|5\t17\t4.25\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t6.28\t42.50\t0.00\t\n-WT_EGFR\tP85B_HUMAN\tPIK3R2\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-WT_EGFR\tP55G_HUMAN\tPIK3R3\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-WT_EGFR\tP85A_HUMAN\tPIK3R1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-WT_EGFR\tK2C1_HUMAN\tKRT1\t3|4|6|5\t18\t4.50\t4\t10|10|7|7\t0.00\t0.00\t0.00\t0.00\t0.00\t-27.06\t0.53\t0.51\t\n-WT_EGFR\tK1C10_HUMAN\tKRT10\t2|0|3|3\t8\t2.00\t4\t1|2|4|3\t0.01\t0.02\t0.01\t0.02\t0.01\t-9.56\t0.80\t0.49\t\n-WT_EGFR\tK1C16_HUMAN\tKRT16\t0|0|2|1\t3\t0.75\t4\t1|1|2|2\t0.03\t0.12\t0.03\t0.12\t0.03\t-5.35\t0.50\t0.47\t\n-WT_EGFR\tGRB2_HUMAN\tGRB2\t2|0|2|2\t6\t1.50\t4\t0|0|0|0\t0.74\t0.99\t0.74\t0.99\t0.74\t-0.11\t15.00\t0.05\t\n-WT_EGFR\tGRP78_HUMAN\tHSPA5\t16|14|11|12\t53\t13.25\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t19.16\t132.50\t0.00\t\n-WT_EGFR\tK22E_HUMAN\tKRT2\t2|3|6|4\t15\t3.75\t4\t4|4|1|1\t0.15\t0.50\t0.15\t0.50\t0.15\t-5.61\t1.50\t0.44\t\n-WT_EGFR\tK2C8_HUMAN\tKRT8\t1|1|2|2\t6\t1.50\t4\t0|0|0|0\t0.49\t0.99\t0.49\t0.99\t0.49\t2.40\t15.00\t0.19\t\n-WT_EGFR\tK2C5_HUMAN\tKRT5\t1|1|3|2\t7\t1.75\t4\t1|1|2|0\t0.29\t0.74\t0.29\t0.74\t0.29\t-1.74\t1.75\t0.26\t\n-WT_EGFR\tK2C4_HUMAN\tKRT4\t0|0|0|0\t0\t0.00\t4\t0|1|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.65\t0.00\t0.51\t\n-WT_EGFR\tK2C6B_HUMAN\tKRT6B\t1|2|4|4\t11\t2.75\t4\t2|2|2|1\t0.25\t0.47\t0.25\t0.47\t0.25\t-4.44\t1.57\t0.42\t\n-WT_EGFR\tK2C7_HUMAN\tKRT7\t0|0|0|2\t2\t0.50\t4\t0|0|0|0\t0.25\t0.99\t0.25\t0.99\t0.25\t-0.11\t5.00\t0.28\t\n-WT_EGFR\tHSP7C_HUMAN\tHSPA8\t15|10|12|11\t48\t12.00\t4\t0|0|1|1\t1.00\t1.00\t1.00\t1.00\t1.00\t12.83\t24.00\t0.00\t\n-WT_EGFR\tPK3CA_HUMAN\tPIK3CA\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-WT_EGFR\tERBB3_HUMAN\tERBB3\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-WT_EGFR\tADT2_HUMAN\tSLC25A5\t5|3|5|5\t18\t4.50\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t6.28\t45.00\t0.00\t\n-WT_EGFR\tADT3_HUMAN\tSLC25A6\t5|4|5|5\t19\t4.75\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t8.02\t47.50\t0.00\t\n-WT_EGFR\tK1C9_HUMAN\tKRT9\t1|1|1|0\t3\t0.75\t4\t0|0|1|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.65\t3.00\t0.51\t\n-WT_EGFR\tTBA1A_HUMAN\tTUBA1A\t5|3|5|3\t16\t4.00\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t6.28\t40.00\t0.00\t\n-WT_EGFR\tTBA4A_HUMAN\tTUBA4A\t3|2|3|1\t9\t2.25\t4\t0|0|0|0\t0.75\t1.00\t0.75\t1.00\t0.75\t2.40\t22.50\t0.02\t\n-WT_EGFR\tARHG5_HUMAN\tARHGEF5\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-WT_EGFR\tPK3CB_HUMAN\tPIK3CB\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-WT_EGFR\tIRS1_HUMAN\tIRS1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-WT_EGFR\tTBB5_HUMAN\tTUBB\t8|6|5|2\t21\t5.25\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t4.43\t52.50\t0.00\t\n-WT_EGFR\tTBB3_HUMAN\tTUBB3\t2|2|3|1\t8\t2.00\t4\t0|0|0|0\t0.74\t1.00\t0.74\t1.00\t0.74\t2.40\t20.00\t0.05\t\n-WT_EGFR\tHS90A_HUMAN\tHSP90AA1\t3|3|1|2\t9\t2.25\t4\t0|0|0|0\t0.75\t1.00\t0.75\t1.00\t0.75\t2.40\t22.50\t0.02\t\n-WT_EGFR\tHS90B_HUMAN\tHSP90AB1\t4|2|1|2\t9\t2.25\t4\t0|0|0|0\t0.74\t1.00\t0.74\t1.00\t0.74\t2.40\t22.50\t0.04\t\n-WT_EGFR\t1433E_HUMAN\tYWHAE\t1|0|0|0\t1\t0.25\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t2.50\t0.51\t\n-WT_EGFR\t1433T_HUMAN\tYWHAQ\t1|0|0|0\t1\t0.25\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t2.50\t0.51\t\n-WT_EGFR\tLPPRC_HUMAN\tLRPPRC\t1|3|3|3\t10\t2.50\t4\t0|0|0|0\t0.75\t1.00\t0.75\t1.00\t0.75\t2.40\t25.00\t0.00\t\n-WT_EGFR\tERRFI_HUMAN\tERRFI1\t1|2|1|1\t5\t1.25\t4\t0|0|0|0\t0.25\t0.99\t0.25\t0.99\t0.25\t2.40\t12.50\t0.28\t\n-WT_EGFR\tAP2A1_HUMAN\tAP2A1\t1|1|1|1\t4\t1.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t2.40\t10.00\t0.51\t\n-WT_EGFR\tGRB7_HUMAN\tGRB7\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-WT_EGFR\tSTAT3_HUMAN\tSTAT3\t4|5|3|3\t15\t3.75\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t6.28\t37.50\t0.00\t\n-WT_EGFR\tANXA2_HUMAN\tANXA2\t3|4|0|1\t8\t2.00\t4\t0|0|0|0\t0.50\t1.00\t0.50\t1.00\t0.50\t-0.11\t20.00\t0.10\t\n-WT_EGFR\tPTPRA_HUMAN\tPTPRA\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-WT_EGFR\tC1QBP_HUMAN\tC1QBP\t0|0|0|0\t0\t0.00\t4\t7|'..b'\t0|0|1|1\t0.00\t0.00\t0.00\t0.00\t0.00\t-1.55\t1.00\t0.51\t\n-ER_P85B\tPK3CA_HUMAN\tPIK3CA\t3|3|6|6\t18\t4.50\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t6.28\t45.00\t0.00\t\n-ER_P85B\tERBB3_HUMAN\tERBB3\t1|0|2|1\t4\t1.00\t4\t0|0|0|0\t0.25\t0.99\t0.25\t0.99\t0.25\t-0.11\t10.00\t0.28\t\n-ER_P85B\tADT2_HUMAN\tSLC25A5\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tADT3_HUMAN\tSLC25A6\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tK1C9_HUMAN\tKRT9\t1|0|1|0\t2\t0.50\t4\t0|0|1|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.65\t2.00\t0.51\t\n-ER_P85B\tTBA1A_HUMAN\tTUBA1A\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tTBA4A_HUMAN\tTUBA4A\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tARHG5_HUMAN\tARHGEF5\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tPK3CB_HUMAN\tPIK3CB\t1|1|4|2\t8\t2.00\t4\t0|0|0|0\t0.50\t1.00\t0.50\t1.00\t0.50\t2.40\t20.00\t0.14\t\n-ER_P85B\tIRS1_HUMAN\tIRS1\t2|3|3|4\t12\t3.00\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t4.43\t30.00\t0.00\t\n-ER_P85B\tTBB5_HUMAN\tTUBB\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tTBB3_HUMAN\tTUBB3\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tHS90A_HUMAN\tHSP90AA1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tHS90B_HUMAN\tHSP90AB1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\t1433E_HUMAN\tYWHAE\t0|0|1|1\t2\t0.50\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t5.00\t0.51\t\n-ER_P85B\t1433T_HUMAN\tYWHAQ\t0|0|1|1\t2\t0.50\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t5.00\t0.51\t\n-ER_P85B\tLPPRC_HUMAN\tLRPPRC\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tERRFI_HUMAN\tERRFI1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tAP2A1_HUMAN\tAP2A1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tGRB7_HUMAN\tGRB7\t1|1|1|0\t3\t0.75\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t7.50\t0.51\t\n-ER_P85B\tSTAT3_HUMAN\tSTAT3\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tANXA2_HUMAN\tANXA2\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tPTPRA_HUMAN\tPTPRA\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tC1QBP_HUMAN\tC1QBP\t0|0|0|0\t0\t0.00\t4\t7|5|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-11.03\t0.00\t0.51\t\n-ER_P85B\tSHC1_HUMAN\tSHC1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tPTN11_HUMAN\tPTPN11\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tPON2_HUMAN\tPON2\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tMET_HUMAN\tMET\t0|0|1|1\t2\t0.50\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t5.00\t0.51\t\n-ER_P85B\tCRKL_HUMAN\tCRKL\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tCBL_HUMAN\tCBL\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tPHLA2_HUMAN\tPHLDA2\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tRT27_HUMAN\tMRPS27\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tM2OM_HUMAN\tSLC25A11\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tSTAT1_HUMAN\tSTAT1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tSLIRP_HUMAN\tSLIRP\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tPK3CD_HUMAN\tPIK3CD\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tGRP75_HUMAN\tHSPA9\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tAIFM1_HUMAN\tAIFM1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tPHB_HUMAN\tPHB\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tHNRPK_HUMAN\tHNRNPK\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tTMM33_HUMAN\tTMEM33\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n-ER_P85B\tRT34_HUMAN\tMRPS34\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n' |