| Previous changeset 3:b38275a23ce0 (2015-12-11) |
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Commit message:
planemo upload |
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modified:
readseq.xml |
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| diff -r b38275a23ce0 -r 1a40d002fdc4 readseq.xml --- a/readseq.xml Fri Dec 11 09:23:33 2015 -0500 +++ b/readseq.xml Wed Jun 15 09:18:26 2016 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="sniplay_readseq" name="Readseq" version="1.0.2"> +<tool id="sniplay_readseq" name="Readseq" version="1.0.3"> <!-- [REQUIRED] Tool description displayed after the tool name --> <description> Convert various alignment formats </description> @@ -17,7 +17,6 @@ <!-- [REQUIRED] The command to execute --> <command> - echo \$JAVA_JAR_PATH && java -jar \$JAVA_JAR_PATH/readseq.jar $filein -f $format >> $fileout_log 2>&1 && #if str( $format ) == "1": mv ${filein}.ig $fileout @@ -84,7 +83,24 @@ <!-- [REQUIRED] Output files --> <outputs> <data name="fileout_log" type="data" format="txt" label="${fileout_label}.log" /> - <data name="fileout" type="data" format="txt" label="${fileout_label}" /> + <data name="fileout" type="data" format="txt" label="${fileout_label}" > + <change_format> + <when input="format" value="1" format="ig" /> + <when input="format" value="2" format="genbank" /> + <when input="format" value="4" format="embl" /> + <when input="format" value="5" format="gcg" /> + <when input="format" value="6" format="strider" /> + <when input="format" value="8" format="fasta" /> + <when input="format" value="11" format="phylip" /> + <when input="format" value="12" format="phylip" /> + <when input="format" value="14" format="pir" /> + <when input="format" value="17" format="nexus" /> + <when input="format" value="18" format="prettyseq" /> + <when input="format" value="19" format="xml" /> + <when input="format" value="22" format="clustal" /> + <when input="format" value="25" format="acedb" /> + </change_format> + </data> </outputs> <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin --> |