| Previous changeset 10:f47b24cccf88 (2014-02-07) Next changeset 12:e38e97bc902d (2015-01-23) |
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Commit message:
Adding auto install for proteowizard dependency |
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modified:
MassComb.jar masscomb_dbsearch_converter.xml tool_dependencies.xml |
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| diff -r f47b24cccf88 -r 1a6fa343b981 MassComb.jar |
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| Binary file MassComb.jar has changed |
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| diff -r f47b24cccf88 -r 1a6fa343b981 masscomb_dbsearch_converter.xml --- a/masscomb_dbsearch_converter.xml Fri Feb 07 15:09:53 2014 +0100 +++ b/masscomb_dbsearch_converter.xml Fri Feb 07 15:55:38 2014 +0100 |
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| @@ -1,5 +1,9 @@ -<tool name="DB search converter" id="masscomb_dbsearch_converter" version="1.0.1"> +<tool name="DB search converter" id="masscomb_dbsearch_converter" version="1.0.5"> <description> Convert search results to MzIdentML (aka mzid) format</description> + <requirements> + <requirement type="set_environment">PWIZ_3_0_5622_PATH</requirement> + <requirement type="package" version="3.05622">proteowizard</requirement> + </requirements> <!-- For remote debugging start you listener on port 8000 and use the following as command interpreter: java -jar -Xdebug -Xrunjdwp:transport=dt_socket,address=D0100564.wurnet.nl:8000 |
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| diff -r f47b24cccf88 -r 1a6fa343b981 tool_dependencies.xml --- a/tool_dependencies.xml Fri Feb 07 15:09:53 2014 +0100 +++ b/tool_dependencies.xml Fri Feb 07 15:55:38 2014 +0100 |
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| @@ -22,7 +22,24 @@ Ensures XTandem is installed. </readme> </package> + <package name="proteowizard" version="3.05622"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://toolshed.g2.bx.psu.edu/repos/pieterlukasse/prims_masscomb/raw-file/tip/pwiz-bin-linux-x86_64-gcc48-release-3_0_5622.tar.bz2</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/pwiz_3_0_5622</destination_directory> + </action> + <action type="set_environment"> + <environment_variable name="PWIZ_3_0_5622_PATH" action="set_to">$INSTALL_DIR/pwiz_3_0_5622</environment_variable> + </action> + </actions> + </install> + <readme> +Ensures ProteoWizard binaries are installed. + </readme> + </package> <set_environment version="1.0"> - <environment_variable name="XTANDEM_12_10_01_PATH" action="set_to">$INSTALL_DIR/tandem-linux-12-10-01-1</environment_variable> + <environment_variable name="PWIZ_3_0_5622_PATH" action="set_to">$INSTALL_DIR/pwiz_3_0_5622</environment_variable> </set_environment> </tool_dependency> \ No newline at end of file |