Repository 'phykit'
hg clone https://toolshed.g2.bx.psu.edu/repos/padge/phykit

Changeset 1:1ac6ee298657 (2022-03-28)
Previous changeset 0:37b049bf729a (2022-03-28)
Commit message:
"planemo upload for repository https://github.com/JLSteenwyk/PhyKIT commit cbe1e8577ecb1a46709034a40dff36052e876e7a-dirty"
modified:
phykit_alignment_based.xml
phykit_tree_based.xml
b
diff -r 37b049bf729a -r 1ac6ee298657 phykit_alignment_based.xml
--- a/phykit_alignment_based.xml Mon Mar 28 16:23:18 2022 +0000
+++ b/phykit_alignment_based.xml Mon Mar 28 16:30:53 2022 +0000
[
@@ -49,7 +49,7 @@
         <data name="partition" format="iqtree" label="A partition file ready for input into RAxML or IQ-tree">
             <filter>tools['tool_selector']=='create_concat'</filter>
         </data>
-        <data name="occupancy" format="txt" label="An occupancy file that summarizes the taxon occupancy per sequence">
+        <data name="occupancy" format="tabular" label="An occupancy file that summarizes the taxon occupancy per sequence">
             <filter>tools['tool_selector']=='create_concat'</filter>
         </data>
         <data name="pairwise_id" format="txt" label="Summary statistics unless used with the verbose option in which all pairwise identities will be reported.">
b
diff -r 37b049bf729a -r 1ac6ee298657 phykit_tree_based.xml
--- a/phykit_tree_based.xml Mon Mar 28 16:23:18 2022 +0000
+++ b/phykit_tree_based.xml Mon Mar 28 16:30:53 2022 +0000
b
@@ -75,7 +75,7 @@
         <test>
             <param name="tool_selector" value="evolutionary_rate" />
             <param name="input1" value="12_YPR191W_Anc_7.548_codon_aln.fasta.clipkit.treefile"/>
-            <output name="evolutionary_rate" file="test_evo_rate.txt"/>
+            <output name="evo_rate" file="test_evo_rate.txt"/>
         </test>
         <test>
             <param name="tool_selector" value="patristic_distances" />