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Commit message:
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 899fc661e76905ace1a27aad1563b62e01944ce7 |
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modified:
batched_lastz.xml |
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| diff -r ae309acc76e8 -r 1aee697ec0fc batched_lastz.xml --- a/batched_lastz.xml Fri Aug 16 15:45:50 2024 +0000 +++ b/batched_lastz.xml Mon Aug 19 19:42:23 2024 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="batched_lastz" name="Batched Lastz" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> +<tool id="batched_lastz" name="Batched LASTZ" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>: align batches of sequences</description> <macros> <import>macros.xml</import> @@ -17,7 +17,7 @@ <param argument="--input" type="data" format="tgz" label="Tarball"/> </inputs> <outputs> - <data name="output" label="Batched Lastz on ${on_string}" format="auto" /> + <data name="output" label="Batched LASTZ on ${on_string}" format="auto" /> </outputs> <tests> <test expect_num_outputs="1"> @@ -26,7 +26,19 @@ </test> </tests> <help><![CDATA[ - Run batched lastz +Batched LASTZ is a special version of LASTZ designed to process output of Galaxy's SegAlign tool. It outputs pairiwse alignments in a verietry of formats. + +**Using this tool** + +.. class:: warningmark + +This tool is the second part of a two-step process for generation of paiwrise alignments. The output of this tool is alignments in a format that was specified in **Output Options** section of SegAlign tool. + +**What it does** + +SegAlign processes **Target** and **Query** sequences to identify highly similar regions where gapped extension will be performed to create actual alignments. The actual alignments are generated by **Batched LASTZ** that should be run on the output of this tool. + +The default output is a MAF alignment file. Other formats can be configured in *Output Options* section. See LASTZ manual <https://lastz.github.io/lastz/#formats>`_ for description of possible formats. ]]></help> <expand macro="citations"/> </tool> |