Repository 'saint_preprocessing'
hg clone https://toolshed.g2.bx.psu.edu/repos/bornea/saint_preprocessing

Changeset 10:1b0547d3c7bc (2016-03-29)
Previous changeset 9:d6a427973fe4 (2016-03-15) Next changeset 11:b688d0dae86b (2016-04-12)
Commit message:
Uploaded
modified:
SAINT_preprocessing.py
b
diff -r d6a427973fe4 -r 1b0547d3c7bc SAINT_preprocessing.py
--- a/SAINT_preprocessing.py Tue Mar 15 16:10:00 2016 -0400
+++ b/SAINT_preprocessing.py Tue Mar 29 14:46:04 2016 -0400
[
@@ -132,7 +132,7 @@
             if uniprot_accession_in == data_line.split("|")[1]:
                 match = count + 1
                 if 'GN=' in data_line:
-                    lst = data_linedata_line.split('GN=')
+                    lst = data_line.split('GN=')
                     lst2 = lst[1].split(' ')
                     genename = lst2[0]
                 if 'GN=' not in data_line:
@@ -144,7 +144,7 @@
                     else:
                         break
                 return ReturnValue1(seqlength, genename)
-        elif uniprot_accession_in == namer.split(" ")[0]:
+        if uniprot_accession_in == namer.split(" ")[0]:
             match = count + 1
             # Ensures consistent spacing throughout.
             if 'GN=' in data_line: