| Previous changeset 22:71a8c9b37d45 (2017-07-10) Next changeset 24:a64925e33444 (2017-07-10) |
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Commit message:
Uploaded |
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added:
GRsetFromGEO.xml |
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| diff -r 71a8c9b37d45 -r 1bdfe0d48de8 GRsetFromGEO.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/GRsetFromGEO.xml Mon Jul 10 08:58:11 2017 -0400 |
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| @@ -0,0 +1,18 @@ +<tool id="getGRset" name="GRsetFromGEO"> + <description>downloads data from GEO</description> + <command>Rscript $__tool_directory__/GRsetFromGEO.R $input output.RData</command> + <inputs> + <param format="text" name="input" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> + </inputs> + <outputs> + <data format="RDdata" name="output" label="output.RData" /> + </outputs> + <help> + **What it does** + This R-based tool downloads data from GEO using getGEO from the GEOquery package and then returns a GenomicRatioSet object + **Input** + The GSE ID of the dataset to be downloaded from GEO "e.g. 'GSE51547'" + **Output** + GenomicRatioSet object + </help> +</tool> |