| Previous changeset 7:8dc7708c3266 (2020-05-14) Next changeset 9:0c0288a9d92c (2020-10-12) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kc-align commit 000db9fd34a1056bbdd95b007acb5919873fa2b6" |
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modified:
kc-align.xml test-data/kc-align.clustal test-data/kc-align.fasta |
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| diff -r 8dc7708c3266 -r 1c65ddbaeefa kc-align.xml --- a/kc-align.xml Thu May 14 11:44:15 2020 -0400 +++ b/kc-align.xml Mon Oct 05 20:09:54 2020 +0000 |
| [ |
| @@ -1,23 +1,28 @@ -<tool id="kc-align" name="Kc-Align" version="0.2" python_template_version="3.5"> +<tool id="kc-align" name="Kc-Align" version="1.0" python_template_version="3.5"> <requirements> - <requirement type="package" version="0.6.1">kcalign</requirement> + <requirement type="package" version="1.0.2">kcalign</requirement> </requirements> <command detect_errors="exit_code"> <![CDATA[ kc-align - --mode $position.mode - --reference '$reference' - --reads '$reads' + --mode '$position.mode' + --reference '$ref' + --sequences '$seqs' #if $position.mode == "genome": - --start $position.start - --end $position.end + --start '$position.start' + --end '$position.end' + -d '$position.dist' + #end if + #if $position.mode == "mixed": + -d '$position.dist' #end if $compress - --parallel + -th '$threads' + ]]></command> <inputs> - <param name="reference" type="data" format="fasta" label="Reference Sequence" help="Single FASTA reference sequence to be aligned" /> - <param name="reads" type="data" format="fasta" label="Reads" help="Multi-FASTA of seqeunces to be aligned with the reference" /> + <param name="ref" type="data" format="fasta" label="Reference Sequence" help="Single FASTA reference sequence to be aligned" /> + <param name="seqs" type="data" format="fasta" label="Reads" help="Multi-FASTA of seqeunces to be aligned with the reference" /> <conditional name="position" > <param name="mode" type="select" label="Mode" > <option value="genome">Genome</option> @@ -27,13 +32,26 @@ <when value="genome" > <param name="start" type="text" value="0" label="Start Position(s)" help="The 1-indexed start position of the gene of interest in the reference sequence (For multi-segmented sequences, input each start site separated by a comma ex: 12562,12591)" /> <param name="end" type="text" value="0" label="End Position(s)" help="The 1-indexed end position of the gene of interest in the reference sequence (For multi-segmented sequences, input each end site separated by a comma ex: 12592,13905)" /> + <param name="dist" type="select" label="Homology distance limit" help="Sequences that are more than an empirically determined distance from the reference are discarded before the final alignment"> + <option value="none">None</option> + <option value="very-close">Very Close</option> + <option value="semi-close">Semi-Close</option> + <option value="less-close">Less Close</option> + </param> </when> <when value="gene" > </when> <when value="mixed" > + <param name="dist" type="select" label="Homology distance limit" help="Sequences that are more than an empirically determined distance from the reference are discarded before the final alignment"> + <option value="none">None</option> + <option value="very-close">Very Close</option> + <option value="semi-close">Semi Close</option> + <option value="less-close">Less Close</option> + </param> </when> </conditional> <param name="compress" type="boolean" truevalue="--compress" falsevalue="" label="Compress" help="Compress identical sequences" /> + <param name="threads" type="integer" argument="-th" value="1" label="Cores" /> </inputs> <outputs> <data name="fasta" format="fasta" from_work_dir="codon_align.fasta" label="${tool.name}: fasta output" /> @@ -41,13 +59,14 @@ </outputs> <tests> <test> - <param name="reference" ftype="fasta" value="wuhan_ref.fasta" /> - <param name="reads" ftype="fasta" value="3.fasta" /> + <param name="ref" ftype="fasta" value="wuhan_ref.fasta" /> + <param name="seqs" ftype="fasta" value="3.fasta" /> <param name="mode" value="genome" /> <param name="start" value="21563" /> <param name="end" value="25384" /> - <output name="fasta" ftype="fasta" compare="diff" value="kc-align.fasta" /> - <output name="clustal" ftype="txt" compare="diff" value="kc-align.clustal" /> + <param name="threads" value="15" /> + <output name="fasta" ftype="fasta" compare="contains" value="kc-align.fasta" /> + <output name="clustal" ftype="txt" compare="contains" value="kc-align.clustal" /> </test> </tests> <help><![CDATA[ |
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| diff -r 8dc7708c3266 -r 1c65ddbaeefa test-data/kc-align.clustal --- a/test-data/kc-align.clustal Thu May 14 11:44:15 2020 -0400 +++ b/test-data/kc-align.clustal Mon Oct 05 20:09:54 2020 +0000 |
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| b'@@ -2,388 +2,388 @@\n \n \n NC_045512.2 ATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAGTCAGTGTGTTAA\n-MT019531.1 ATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAGTCAGTGTGTTAA\n+MT019532.1 ATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAGTCAGTGTGTTAA\n MN996528.1 ATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAGTCAGTGTGTTAA\n-MT019532.1 ATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAGTCAGTGTGTTAA\n+MT019531.1 ATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAGTCAGTGTGTTAA\n \n NC_045512.2 TCTTACAACCAGAACTCAATTACCCCCTGCATACACTAATTCTTTCACAC\n-MT019531.1 TCTTACAACCAGAACTCAATTACCCCCTGCATACACTAATTCTTTCACAC\n+MT019532.1 TCTTACAACCAGAACTCAATTACCCCCTGCATACACTAATTCTTTCACAC\n MN996528.1 TCTTACAACCAGAACTCAATTACCCCCTGCATACACTAATTCTTTCACAC\n-MT019532.1 TCTTACAACCAGAACTCAATTACCCCCTGCATACACTAATTCTTTCACAC\n+MT019531.1 TCTTACAACCAGAACTCAATTACCCCCTGCATACACTAATTCTTTCACAC\n \n NC_045512.2 GTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACATTCA\n-MT019531.1 GTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACATTCA\n+MT019532.1 GTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACATTCA\n MN996528.1 GTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACATTCA\n-MT019532.1 GTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACATTCA\n+MT019531.1 GTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACATTCA\n \n NC_045512.2 ACTCAGGACTTGTTCTTACCTTTCTTTTCCAATGTTACTTGGTTCCATGC\n-MT019531.1 ACTCAGGACTTGTTCTTACCTTTCTTTTCCAATGTTACTTGGTTCCATGC\n+MT019532.1 ACTCAGGACTTGTTCTTACCTTTCTTTTCCAATGTTACTTGGTTCCATGC\n MN996528.1 ACTCAGGACTTGTTCTTACCTTTCTTTTCCAATGTTACTTGGTTCCATGC\n-MT019532.1 ACTCAGGACTTGTTCTTACCTTTCTTTTCCAATGTTACTTGGTTCCATGC\n+MT019531.1 ACTCAGGACTTGTTCTTACCTTTCTTTTCCAATGTTACTTGGTTCCATGC\n \n NC_045512.2 TATACATGTCTCTGGGACCAATGGTACTAAGAGGTTTGATAACCCTGTCC\n-MT019531.1 TATACATGTCTCTGGGACCAATGGTACTAAGAGGTTTGATAACCCTGTCC\n+MT019532.1 TATACATGTCTCTGGGACCAATGGTACTAAGAGGTTTGATAACCCTGTCC\n MN996528.1 TATACATGTCTCTGGGACCAATGGTACTAAGAGGTTTGATAACCCTGTCC\n-MT019532.1 TATACATGTCTCTGGGACCAATGGTACTAAGAGGTTTGATAACCCTGTCC\n+MT019531.1 TATACATGTCTCTGGGACCAATGGTACTAAGAGGTTTGATAACCCTGTCC\n \n NC_045512.2 TACCATTTAATGATGGTGTTTATTTTGCTTCCACTGAGAAGTCTAACATA\n-MT019531.1 TACCATTTAATGATGGTGTTTATTTTGCTTCCACTGAGAAGTCTAACATA\n+MT019532.1 TACCATTTAATGATGGTGTTTATTTTGCTTCCACTGAGAAGTCTAACATA\n MN996528.1 TACCATTTAATGATGGTGTTTATTTTGCTTCCACTGAGAAGTCTAACATA\n-MT019532.1 TACCATTTAATGATGGTGTTTATTTTGCTTCCACTGAGAAGTCTAACATA\n+MT019531.1 TACCATTTAATGATGGTGTTTATTTTGCTTCCACTGAGAAGTCTAACATA\n \n NC_045512.2 ATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAAGACCCAGTCCCT\n-MT019531.1 ATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAAGACCCAGTCCCT\n+MT019532.1 ATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAAGACCCAGTCCCT\n MN996528.1 ATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAAGACCCAGTCCCT\n-MT019532.1 ATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAAGACCCAGTCCCT\n+MT019531.1 ATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAAGACCCAGTCCCT\n \n NC_045512.2 ACTTATTGTTAATAACGCTACTAATGTTGTTATTAAAGTCTGTGAATTTC\n-MT019531.1 ACTTATTGTTAATAACGCTACTAATGTTGTTATTAAAGTCTGTGAATTTC\n+MT019532.1 ACTTATTGTTAATAACGCTACTAATGTTGTTATTAAAGTCTGTGAATTTC\n '..b'GAATCATACATCACCAGATGTTGATTTAGG\n-MT019531.1 GAGTTAGATAAATATTTTAAGAATCATACATCACCAGATGTTGATTTAGG\n+MT019532.1 GAGTTAGATAAATATTTTAAGAATCATACATCACCAGATGTTGATTTAGG\n MN996528.1 GAGTTAGATAAATATTTTAAGAATCATACATCACCAGATGTTGATTTAGG\n-MT019532.1 GAGTTAGATAAATATTTTAAGAATCATACATCACCAGATGTTGATTTAGG\n+MT019531.1 GAGTTAGATAAATATTTTAAGAATCATACATCACCAGATGTTGATTTAGG\n \n NC_045512.2 TGACATCTCTGGCATTAATGCTTCAGTTGTAAACATTCAAAAAGAAATTG\n-MT019531.1 TGACATCTCTGGCATTAATGCTTCAGTTGTAAACATTCAAAAAGAAATTG\n+MT019532.1 TGACATCTCTGGCATTAATGCTTCAGTTGTAAACATTCAAAAAGAAATTG\n MN996528.1 TGACATCTCTGGCATTAATGCTTCAGTTGTAAACATTCAAAAAGAAATTG\n-MT019532.1 TGACATCTCTGGCATTAATGCTTCAGTTGTAAACATTCAAAAAGAAATTG\n+MT019531.1 TGACATCTCTGGCATTAATGCTTCAGTTGTAAACATTCAAAAAGAAATTG\n \n NC_045512.2 ACCGCCTCAATGAGGTTGCCAAGAATTTAAATGAATCTCTCATCGATCTC\n-MT019531.1 ACCGCCTCAATGAGGTTGCCAAGAATTTAAATGAATCTCTCATCGATCTC\n+MT019532.1 ACCGCCTCAATGAGGTTGCCAAGAATTTAAATGAATCTCTCATCGATCTC\n MN996528.1 ACCGCCTCAATGAGGTTGCCAAGAATTTAAATGAATCTCTCATCGATCTC\n-MT019532.1 ACCGCCTCAATGAGGTTGCCAAGAATTTAAATGAATCTCTCATCGATCTC\n+MT019531.1 ACCGCCTCAATGAGGTTGCCAAGAATTTAAATGAATCTCTCATCGATCTC\n \n NC_045512.2 CAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCCATGGTACATTTG\n-MT019531.1 CAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCCATGGTACATTTG\n+MT019532.1 CAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCCATGGTACATTTG\n MN996528.1 CAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCCATGGTACATTTG\n-MT019532.1 CAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCCATGGTACATTTG\n+MT019531.1 CAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCCATGGTACATTTG\n \n NC_045512.2 GCTAGGTTTTATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTATGC\n-MT019531.1 GCTAGGTTTTATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTATGC\n+MT019532.1 GCTAGGTTTTATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTATGC\n MN996528.1 GCTAGGTTTTATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTATGC\n-MT019532.1 GCTAGGTTTTATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTATGC\n+MT019531.1 GCTAGGTTTTATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTATGC\n \n NC_045512.2 TTTGCTGTATGACCAGTTGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGT\n-MT019531.1 TTTGCTGTATGACCAGTTGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGT\n+MT019532.1 TTTGCTGTATGACCAGTTGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGT\n MN996528.1 TTTGCTGTATGACCAGTTGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGT\n-MT019532.1 TTTGCTGTATGACCAGTTGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGT\n+MT019531.1 TTTGCTGTATGACCAGTTGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGT\n \n NC_045512.2 GGATCCTGCTGCAAATTTGATGAAGACGACTCTGAGCCAGTGCTCAAAGG\n-MT019531.1 GGATCCTGCTGCAAATTTGATGAAGACGACTCTGAGCCAGTGCTCAAAGG\n+MT019532.1 GGATCCTGCTGCAAATTTGATGAAGACGACTCTGAGCCAGTGCTCAAAGG\n MN996528.1 GGATCCTGCTGCAAATTTGATGAAGACGACTCTGAGCCAGTGCTCAAAGG\n-MT019532.1 GGATCCTGCTGCAAATTTGATGAAGACGACTCTGAGCCAGTGCTCAAAGG\n+MT019531.1 GGATCCTGCTGCAAATTTGATGAAGACGACTCTGAGCCAGTGCTCAAAGG\n \n NC_045512.2 AGTCAAATTACATTACACA\n-MT019531.1 AGTCAAATTACATTACACA\n+MT019532.1 AGTCAAATTACATTACACA\n MN996528.1 AGTCAAATTACATTACACA\n-MT019532.1 AGTCAAATTACATTACACA\n+MT019531.1 AGTCAAATTACATTACACA\n \n \n' |
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| diff -r 8dc7708c3266 -r 1c65ddbaeefa test-data/kc-align.fasta --- a/test-data/kc-align.fasta Thu May 14 11:44:15 2020 -0400 +++ b/test-data/kc-align.fasta Mon Oct 05 20:09:54 2020 +0000 |
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| b'@@ -63,6 +63,136 @@\n ATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTATGCTTTGCTGTATGACCAGTTGC\n TGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTGCTGCAAATTTGATGAAGACGAC\n TCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACACA\n+>MT019532.1 Severe acute respiratory syndrome coronavirus 2 isolate BetaCoV/Wuhan/IPBCAMS-WH-04/2019, complete genome\n+ATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAGTCAGTGTGTTAATCTTACAACC\n+AGAACTCAATTACCCCCTGCATACACTAATTCTTTCACACGTGGTGTTTATTACCCTGAC\n+AAAGTTTTCAGATCCTCAGTTTTACATTCAACTCAGGACTTGTTCTTACCTTTCTTTTCC\n+AATGTTACTTGGTTCCATGCTATACATGTCTCTGGGACCAATGGTACTAAGAGGTTTGAT\n+AACCCTGTCCTACCATTTAATGATGGTGTTTATTTTGCTTCCACTGAGAAGTCTAACATA\n+ATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAAGACCCAGTCCCTACTTATTGTT\n+AATAACGCTACTAATGTTGTTATTAAAGTCTGTGAATTTCAATTTTGTAATGATCCATTT\n+TTGGGTGTTTATTACCACAAAAACAACAAAAGTTGGATGGAAAGTGAGTTCAGAGTTTAT\n+TCTAGTGCGAATAATTGCACTTTTGAATATGTCTCTCAGCCTTTTCTTATGGACCTTGAA\n+GGAAAACAGGGTAATTTCAAAAATCTTAGGGAATTTGTGTTTAAGAATATTGATGGTTAT\n+TTTAAAATATATTCTAAGCACACGCCTATTAATTTAGTGCGTGATCTCCCTCAGGGTTTT\n+TCGGCTTTAGAACCATTGGTAGATTTGCCAATAGGTATTAACATCACTAGGTTTCAAACT\n+TTACTTGCTTTACATAGAAGTTATTTGACTCCTGGTGATTCTTCTTCAGGTTGGACAGCT\n+GGTGCTGCAGCTTATTATGTGGGTTATCTTCAACCTAGGACTTTTCTATTAAAATATAAT\n+GAAAATGGAACCATTACAGATGCTGTAGACTGTGCACTTGACCCTCTCTCAGAAACAAAG\n+TGTACGTTGAAATCCTTCACTGTAGAAAAAGGAATCTATCAAACTTCTAACTTTAGAGTC\n+CAACCAACAGAATCTATTGTTAGATTTCCTAATATTACAAACTTGTGCCCTTTTGGTGAA\n+GTTTTTAACGCCACCAGATTTGCATCTGTTTATGCTTGGAACAGGAAGAGAATCAGCAAC\n+TGTGTTGCTGATTATTCTGTCCTATATAATTCCGCATCATTTTCCACTTTTAAGTGTTAT\n+GGAGTGTCTCCTACTAAATTAAATGATCTCTGCTTTACTAATGTCTATGCAGATTCATTT\n+GTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGGGCAAACTGGAAAGATTGCTGAT\n+TATAATTATAAATTACCAGATGATTTTACAGGCTGCGTTATAGCTTGGAATTCTAACAAT\n+CTTGATTCTAAGGTTGGTGGTAATTATAATTACCTGTATAGATTGTTTAGGAAGTCTAAT\n+CTCAAACCTTTTGAGAGAGATATTTCAACTGAAATCTATCAGGCCGGTAGCACACCTTGT\n+AATGGTGTTGAAGGTTTTAATTGTTACTTTCCTTTACAATCATATGGTTTCCAACCCACT\n+AATGGTGTTGGTTACCAACCATACAGAGTAGTAGTACTTTCTTTTGAACTTCTACATGCA\n+CCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTTGGTTAAAAACAAATGTGTCAAT\n+TTCAACTTCAATGGTTTAACAGGCACAGGTGTTCTTACTGAGTCTAACAAAAAGTTTCTG\n+CCTTTCCAACAATTTGGCAGAGACATTGCTGACACTACTGATGCTGTCCGTGATCCACAG\n+ACACTTGAGATTCTTGACATTACACCATGTTCTTTTGGTGGTGTCAGTGTTATAACACCA\n+GGAACAAATACTTCTAACCAGGTTGCTGTTCTTTATCAGGATGTTAACTGCACAGAAGTC\n+CCTGTTGCTATTCATGCAGATCAACTTACTCCTACTTGGCGTGTTTATTCTACAGGTTCT\n+AATGTTTTTCAAACACGTGCAGGCTGTTTAATAGGGGCTGAACATGTCAACAACTCATAT\n+GAGTGTGACATACCCATTGGTGCAGGTATATGCGCTAGTTATCAGACTCAGACTAATTCT\n+CCTCGGCGGGCACGTAGTGTAGCTAGTCAATCCATCATTGCCTACACTATGTCACTTGGT\n+GCAGAAAATTCAGTTGCTTACTCTAATAACTCTATTGCCATACCCACAAATTTTACTATT\n+AGTGTTACCACAGAAATTCTACCAGTGTCTATGACCAAGACATCAGTAGATTGTACAATG\n+TACATTTGTGGTGATTCAACTGAATGCAGCAATCTTTTGTTGCAATATGGCAGTTTTTGT\n+ACACAATTAAACCGTGCTTTAACTGGAATAGCTGTTGAACAAGACAAAAACACCCAAGAA\n+GTTTTTGCACAAGTCAAACAAATTTACAAAACACCACCAATTAAAGATTTTGGTGGTTTT\n+AATTTTTCACAAATATTACCAGATCCATCAAAACCAAGCAAGAGGTCATTTATTGAAGAT\n+CTACTTTTCAACAAAGTGACACTTGCAGATGCTGGCTTCATCAAACAATATGGTGATTGC\n+CTTGGTGATATTGCTGCTAGAGACCTCATTTGTGCACAAAAGTTTAACGGCCTTACTGTT\n+TTGCCACCTTTGCTCACAGATGAAATGATTGCTCAATACACTTCTGCACTGTTAGCGGGT\n+ACAATCACTTCTGGTTGGACCTTTGGTGCAGGTGCTGCATTACAAATACCATTTGCTATG\n+CAAATGGCTTATAGGTTTAATGGTATTGGAGTTACACAGAATGTTCTCTATGAGAACCAA\n+AAATTGATTGCCAACCAATTTAATAGTGCTATTGGCAAAATTCAAGACTCACTTTCTTCC\n+ACAGCAAGTGCACTTGGAAAACTTCAAGATGTGGTCAACCAAAATGCACAAGCTTTAAAC\n+ACGCTTGTTAAACAACTTAGCTCCAATTTTGGTGCAATTTCAAGTGTTTTAAATGATATC\n+CTTTCACGTCTTGACAAAGTTGAGGCTGAAGTGCAAATTGATAGGTTGATCACAGGCAGA\n+CTTCAAAGTTTGCAGACATATGTGACTCAACAATTAATTAGAGCTGCAGAAATCAGAGCT\n+TCTGCTAATCTTGCTGCTACTAAAATGTCAGAGTGTGTACTTGGACAATCAAAAAGAGTT\n+GATTTTTGTGGAAAGGGCTATCATCTTATGTCCTTCCCTCAGTCAGCACCTCATGGTGTA\n+GTCTTCTTGCATGTGACTTATGTCCCTGCACAAGAAAAGAACTTCACAACTGCTCCTGCC\n+ATTTGTCATGATGGAAAAGCACACTTTCCTCGTGAAGGTGTCTTTGTTTCAAATGGCACA\n+CACTGGTTTGTAACACAAAGGAATTTTTATGAACCACAAATCATTACTACAGACAACACA\n+TTTGTGTCTGGTAACTGTGATGTTGTAATAGGAATTGTCAACAACACAGTTTATGATCCT\n+TTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGATAAATATTTTAAGAATCATACA\n+TCACCAGATGTTGATTTAGGTGACATCTCTGGCATTAATGCTTCAGTTGTAAACATTCAA\n+AAAGAAATTGACCGCCTCAATGAGGTTGCCAAGAAT'..b'e BetaCoV/Wuhan/IPBCAMS-WH-04/2019, complete genome\n-ATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAGTCAGTGTGTTAATCTTACAACC\n-AGAACTCAATTACCCCCTGCATACACTAATTCTTTCACACGTGGTGTTTATTACCCTGAC\n-AAAGTTTTCAGATCCTCAGTTTTACATTCAACTCAGGACTTGTTCTTACCTTTCTTTTCC\n-AATGTTACTTGGTTCCATGCTATACATGTCTCTGGGACCAATGGTACTAAGAGGTTTGAT\n-AACCCTGTCCTACCATTTAATGATGGTGTTTATTTTGCTTCCACTGAGAAGTCTAACATA\n-ATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAAGACCCAGTCCCTACTTATTGTT\n-AATAACGCTACTAATGTTGTTATTAAAGTCTGTGAATTTCAATTTTGTAATGATCCATTT\n-TTGGGTGTTTATTACCACAAAAACAACAAAAGTTGGATGGAAAGTGAGTTCAGAGTTTAT\n-TCTAGTGCGAATAATTGCACTTTTGAATATGTCTCTCAGCCTTTTCTTATGGACCTTGAA\n-GGAAAACAGGGTAATTTCAAAAATCTTAGGGAATTTGTGTTTAAGAATATTGATGGTTAT\n-TTTAAAATATATTCTAAGCACACGCCTATTAATTTAGTGCGTGATCTCCCTCAGGGTTTT\n-TCGGCTTTAGAACCATTGGTAGATTTGCCAATAGGTATTAACATCACTAGGTTTCAAACT\n-TTACTTGCTTTACATAGAAGTTATTTGACTCCTGGTGATTCTTCTTCAGGTTGGACAGCT\n-GGTGCTGCAGCTTATTATGTGGGTTATCTTCAACCTAGGACTTTTCTATTAAAATATAAT\n-GAAAATGGAACCATTACAGATGCTGTAGACTGTGCACTTGACCCTCTCTCAGAAACAAAG\n-TGTACGTTGAAATCCTTCACTGTAGAAAAAGGAATCTATCAAACTTCTAACTTTAGAGTC\n-CAACCAACAGAATCTATTGTTAGATTTCCTAATATTACAAACTTGTGCCCTTTTGGTGAA\n-GTTTTTAACGCCACCAGATTTGCATCTGTTTATGCTTGGAACAGGAAGAGAATCAGCAAC\n-TGTGTTGCTGATTATTCTGTCCTATATAATTCCGCATCATTTTCCACTTTTAAGTGTTAT\n-GGAGTGTCTCCTACTAAATTAAATGATCTCTGCTTTACTAATGTCTATGCAGATTCATTT\n-GTAATTAGAGGTGATGAAGTCAGACAAATCGCTCCAGGGCAAACTGGAAAGATTGCTGAT\n-TATAATTATAAATTACCAGATGATTTTACAGGCTGCGTTATAGCTTGGAATTCTAACAAT\n-CTTGATTCTAAGGTTGGTGGTAATTATAATTACCTGTATAGATTGTTTAGGAAGTCTAAT\n-CTCAAACCTTTTGAGAGAGATATTTCAACTGAAATCTATCAGGCCGGTAGCACACCTTGT\n-AATGGTGTTGAAGGTTTTAATTGTTACTTTCCTTTACAATCATATGGTTTCCAACCCACT\n-AATGGTGTTGGTTACCAACCATACAGAGTAGTAGTACTTTCTTTTGAACTTCTACATGCA\n-CCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTTGGTTAAAAACAAATGTGTCAAT\n-TTCAACTTCAATGGTTTAACAGGCACAGGTGTTCTTACTGAGTCTAACAAAAAGTTTCTG\n-CCTTTCCAACAATTTGGCAGAGACATTGCTGACACTACTGATGCTGTCCGTGATCCACAG\n-ACACTTGAGATTCTTGACATTACACCATGTTCTTTTGGTGGTGTCAGTGTTATAACACCA\n-GGAACAAATACTTCTAACCAGGTTGCTGTTCTTTATCAGGATGTTAACTGCACAGAAGTC\n-CCTGTTGCTATTCATGCAGATCAACTTACTCCTACTTGGCGTGTTTATTCTACAGGTTCT\n-AATGTTTTTCAAACACGTGCAGGCTGTTTAATAGGGGCTGAACATGTCAACAACTCATAT\n-GAGTGTGACATACCCATTGGTGCAGGTATATGCGCTAGTTATCAGACTCAGACTAATTCT\n-CCTCGGCGGGCACGTAGTGTAGCTAGTCAATCCATCATTGCCTACACTATGTCACTTGGT\n-GCAGAAAATTCAGTTGCTTACTCTAATAACTCTATTGCCATACCCACAAATTTTACTATT\n-AGTGTTACCACAGAAATTCTACCAGTGTCTATGACCAAGACATCAGTAGATTGTACAATG\n-TACATTTGTGGTGATTCAACTGAATGCAGCAATCTTTTGTTGCAATATGGCAGTTTTTGT\n-ACACAATTAAACCGTGCTTTAACTGGAATAGCTGTTGAACAAGACAAAAACACCCAAGAA\n-GTTTTTGCACAAGTCAAACAAATTTACAAAACACCACCAATTAAAGATTTTGGTGGTTTT\n-AATTTTTCACAAATATTACCAGATCCATCAAAACCAAGCAAGAGGTCATTTATTGAAGAT\n-CTACTTTTCAACAAAGTGACACTTGCAGATGCTGGCTTCATCAAACAATATGGTGATTGC\n-CTTGGTGATATTGCTGCTAGAGACCTCATTTGTGCACAAAAGTTTAACGGCCTTACTGTT\n-TTGCCACCTTTGCTCACAGATGAAATGATTGCTCAATACACTTCTGCACTGTTAGCGGGT\n-ACAATCACTTCTGGTTGGACCTTTGGTGCAGGTGCTGCATTACAAATACCATTTGCTATG\n-CAAATGGCTTATAGGTTTAATGGTATTGGAGTTACACAGAATGTTCTCTATGAGAACCAA\n-AAATTGATTGCCAACCAATTTAATAGTGCTATTGGCAAAATTCAAGACTCACTTTCTTCC\n-ACAGCAAGTGCACTTGGAAAACTTCAAGATGTGGTCAACCAAAATGCACAAGCTTTAAAC\n-ACGCTTGTTAAACAACTTAGCTCCAATTTTGGTGCAATTTCAAGTGTTTTAAATGATATC\n-CTTTCACGTCTTGACAAAGTTGAGGCTGAAGTGCAAATTGATAGGTTGATCACAGGCAGA\n-CTTCAAAGTTTGCAGACATATGTGACTCAACAATTAATTAGAGCTGCAGAAATCAGAGCT\n-TCTGCTAATCTTGCTGCTACTAAAATGTCAGAGTGTGTACTTGGACAATCAAAAAGAGTT\n-GATTTTTGTGGAAAGGGCTATCATCTTATGTCCTTCCCTCAGTCAGCACCTCATGGTGTA\n-GTCTTCTTGCATGTGACTTATGTCCCTGCACAAGAAAAGAACTTCACAACTGCTCCTGCC\n-ATTTGTCATGATGGAAAAGCACACTTTCCTCGTGAAGGTGTCTTTGTTTCAAATGGCACA\n-CACTGGTTTGTAACACAAAGGAATTTTTATGAACCACAAATCATTACTACAGACAACACA\n-TTTGTGTCTGGTAACTGTGATGTTGTAATAGGAATTGTCAACAACACAGTTTATGATCCT\n-TTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGATAAATATTTTAAGAATCATACA\n-TCACCAGATGTTGATTTAGGTGACATCTCTGGCATTAATGCTTCAGTTGTAAACATTCAA\n-AAAGAAATTGACCGCCTCAATGAGGTTGCCAAGAATTTAAATGAATCTCTCATCGATCTC\n-CAAGAACTTGGAAAGTATGAGCAGTATATAAAATGGCCATGGTACATTTGGCTAGGTTTT\n-ATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTATGCTTTGCTGTATGACCAGTTGC\n-TGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTGCTGCAAATTTGATGAAGACGAC\n-TCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACACA\n' 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