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Commit message:
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/repenrich commit 50a80e047ef74664d616a332f93c84f27cb6b7a0 |
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modified:
edger-repenrich.xml repenrich.xml |
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| diff -r 15e3e29f310e -r 1c9810ba0638 edger-repenrich.xml --- a/edger-repenrich.xml Tue Sep 19 17:23:15 2017 -0400 +++ b/edger-repenrich.xml Fri Sep 22 03:19:23 2017 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="edger-repenrich" name="edgeR-repenrich" version="1.4.2"> +<tool id="edger-repenrich" name="edgeR-repenrich" version="1.4.3"> <description>Determines differentially expressed features from RepEnrich counts</description> <requirements> <requirement type="package" version="3.16.5">bioconductor-edger</requirement> @@ -72,13 +72,13 @@ ]]> </command> <inputs> - <param name="factorName" type="text" value="FactorName" label="Specify a factor name, e.g. genotype or age or drug_x" + <param name="factorName" type="text" value="FactorName" label="Specify a factor name, e.g. genotype or age or drug_x" help="Only letters, numbers and underscores will be retained in this field"> <sanitizer> <valid initial="string.letters,string.digits"><add value="_" /></valid> </sanitizer> </param> - <param name="factorLevel_A" type="text" value="FactorLevel1" label="Specify a factor level, typical values could be 'wildtype' or 'control'" + <param name="factorLevel_A" type="text" value="FactorLevel1" label="Specify a factor level, typical values could be 'mutant' or 'Drug_X'" help="Only letters, numbers and underscores will be retained in this field"> <sanitizer> <valid initial="string.letters,string.digits"><add value="_" /></valid> @@ -86,7 +86,7 @@ </param> <param name="countsFiles_A" type="data" format="tabular" multiple="true" label="Counts file(s)" help="Count files must have been generated by repenrich" /> <param name="alignmentFiles_A" type="data" format="tabular" multiple="true" label="Number of aligned reads file(s)" help="files of total aligned reads generated by repenrich"/> - <param name="factorLevel_B" type="text" value="FactorLevel2" label="Specify a factor level, typical values could be 'mutant' or 'Drug_X'" + <param name="factorLevel_B" type="text" value="FactorLevel2" label="Specify a factor level, typical values could be 'wildtype' or 'control'" help="Only letters, numbers and underscores will be retained in this field"> <sanitizer> <valid initial="string.letters,string.digits"><add value="_" /></valid> |
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| diff -r 15e3e29f310e -r 1c9810ba0638 repenrich.xml --- a/repenrich.xml Tue Sep 19 17:23:15 2017 -0400 +++ b/repenrich.xml Fri Sep 22 03:19:23 2017 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="repenrich" name="RepEnrich" version="1.4.2"> +<tool id="repenrich" name="RepEnrich" version="1.4.3"> <description>Repeat Element Profiling</description> <requirements> <requirement type="package" version="1.2.0">bowtie</requirement> |