| Previous changeset 2:412403eec79c (2018-06-17) Next changeset 4:b014014e685a (2018-06-17) |
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Commit message:
planemo upload |
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modified:
protein_rna_correlation.xml |
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| diff -r 412403eec79c -r 1ce4407692a0 protein_rna_correlation.xml --- a/protein_rna_correlation.xml Sun Jun 17 04:44:29 2018 -0400 +++ b/protein_rna_correlation.xml Sun Jun 17 04:59:40 2018 -0400 |
| [ |
| @@ -1,4 +1,4 @@ -<tool id="protein_rna_correlation" name="protein_rna_correlation" version="0.1.0"> +<tool id="protein_rna_correlation" name="protein_rna_correlation" version="0.1.1"> <description>Correlation between protein and rna expression (Single Sample)</description> <requirements> <requirement type="package" version="3.3.1">r-base</requirement> @@ -15,7 +15,6 @@ <requirement type="package" version="3.1-137">nlme</requirement> </requirements> <command detect_errors="exit_code" interpreter="Rscript"><![CDATA[protein_rna_correlation.r $pe_exp $ge_exp $pe_idcol $ge_idcol $pe_expcol $ge_expcol $pe_idtype $ge_idtype $organism_map $writeMapUnmap $doScale "$html_file" "$html_file.files_path"]]></command> - <inputs> <param name="pe_exp" type="data" format="tabular"> <label>Input Protein Expression File</label> @@ -54,12 +53,6 @@ <label>Biomart ID Mapping file (.map)</label> </param> - <!--<param name="method" type="select" label="Correlation Method"> - <option value="pearson" selected="true">Pearson</option> - <option value="spearman">Spearman</option> - <option value="kendall">Kendall</option> - </param>--> - <param name="writeMapUnmap" type="boolean"> <label>Create the list of Mapped and Unmapped Identifiers in HTML</label> </param> @@ -80,7 +73,6 @@ <param name="pe_idcol" value="7"/> <param name="ge_exp" value="GE_mouse_singlesample.txt"/> <param name="ge_idcol" value="1"/> - <param name="method" value="pearson"/> <param name="pe_expcol" value="13"/> <param name="ge_expcol" value="10"/> <param name="pe_idtype" value="Ensembl_with_version"/> |