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Commit message:
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r 1d307129f4f2 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Wed Nov 04 06:15:41 2015 -0500 |
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| @@ -0,0 +1,32 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="ngs_sdk" version="1.1.3"> + <repository changeset_revision="2cc3f1941cb5" name="package_ngs_sdk_1_1_3" owner="mvdbeek" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="ncbi_vdb" version="2.5.2"> + <install version="1.0"> + <actions> + <action target_filename="ncbi-vdb-2.5.2.tar.gz" type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="perl" version="5.18.1" /> + </repository> + <repository changeset_revision="2cc3f1941cb5" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="ngs_sdk" version="1.1.3" /> + </repository> + </action> + <action type="autoconf">--with-ngs-sdk-prefix=$NGS_SDK_DIR --prefix=$INSTALL_DIR --build=$INSTALL_DIR</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/</destination_directory> + </action> + <action type="set_environment"> + <environment_variable action="set_to" name="NCBI_VDB_DIR">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + ncbi-vdb, required for sra-tools package. + </readme> + </package> +</tool_dependency> |