| Previous changeset 1:ae969fdb8442 (2023-10-16) Next changeset 3:02fc39c8610d (2024-03-26) |
|
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc commit 01d58fe886f6ab256b6eb8d4a65b978f81b81262 |
|
modified:
baredsc_combine_2d.xml macros.xml |
| b |
| diff -r ae969fdb8442 -r 1d77986f9ddc baredsc_combine_2d.xml --- a/baredsc_combine_2d.xml Mon Oct 16 14:01:47 2023 +0000 +++ b/baredsc_combine_2d.xml Fri Dec 01 11:54:24 2023 +0000 |
| [ |
| @@ -34,6 +34,7 @@ ## Advanced @ADVANCED_COMMON_X@ @ADVANCED_COMMON_COMPLEMENT_2D@ + $advanced.getPVal ## Outputs --figure baredSC.$plots.image_file_format && mkdir output && @@ -57,6 +58,7 @@ <expand macro="macro_splity"/> </section> <section name="advanced" title="Advanced parameters" expanded="false"> + <param argument="--getPVal" type="boolean" truevalue="--getPVal" falsevalue="" checked="false" label="Use less samples to get an estimation of the p-value."/> <expand macro="macro_advanced_common_axis" axis="x" default_osamppdf="4"/> <expand macro="macro_advanced_common_axis" axis="y" default_osamppdf="4"/> <expand macro="macro_advanced_evidence"/> @@ -135,6 +137,65 @@ </element> </output_collection> </test> + <!-- Second test --> + <test> + <conditional name="input_counts"> + <param name="filetype" value="tabular"/> + <param name="input" value="nih3t3_generated_2d_2.txt"/> + </conditional> + <param name="geneXColName" value="0.5_0_0_0.5_x"/> + <param name="geneYColName" value="0.5_0_0_0.5_y"/> + <section name="MCMC"> + <param name="outputs" value="2d_small_1gauss.npz,2d_small_2gauss.npz"/> + <param name="nx" value="10"/> + <param name="ny" value="12"/> + </section> + <section name="plots"> + <param name="prettyBinsx" value="5"/> + <param name="prettyBinsy" value="5"/> + </section> + <section name="advanced"> + <param name="getPVal" value="true"/> + </section> + <output name="pdf2d" ftype="tabular"> + <assert_contents> + <has_n_lines n="6"/> + </assert_contents> + </output> + <output name="pdf2d_flat" ftype="tabular"> + <assert_contents> + <has_text_matching expression="x\s+y\s+low\s+mean\s+high\s+median"/> + <has_n_lines n="26"/> + </assert_contents> + </output> + <output name="plot" ftype="png"> + <assert_contents> + <has_size value="35696" delta="3000"/> + </assert_contents> + </output> + <output_collection name="other_outputs" count="3" type="list"> + <element name="corr" ftype="txt"> + <assert_contents> + <has_n_lines n="2"/> + <has_line_matching expression="mean\tmedian\tlow\thigh\tpval\terror"/> + <has_text_matching expression="0\.9[0-9]+\s+0\.9[0-9]+\s+0\.9[0-9]+\s+0\.9[0-9]+\s+0\.007[0-9]+\s+0\.007[0-9]+"/> + </assert_contents> + </element> + <element name="individuals" ftype="png"> + <assert_contents> + <has_size value="73051" delta="7000"/> + </assert_contents> + </element> + <element name="median" ftype="png"> + <assert_contents> + <has_size value="35686" delta="4000"/> + </assert_contents> + </element> + </output_collection> + <assert_stdout> + <has_text text="Sampling 127 independent samples."/> + </assert_stdout> + </test> </tests> <expand macro="helpcitations"/> </tool> \ No newline at end of file |
| b |
| diff -r ae969fdb8442 -r 1d77986f9ddc macros.xml --- a/macros.xml Mon Oct 16 14:01:47 2023 +0000 +++ b/macros.xml Fri Dec 01 11:54:24 2023 +0000 |
| b |
| @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">1.1.2</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">baredsc</requirement> |