Galaxy |

Changeset 1:1db84db797b1 (2020-02-05)

Previous changeset 0:2f279a01f3ff (2019-12-16) Next changeset 2:3df84bb4486c (2020-03-11)

Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"

added:
test-data/dm3_genes.bed.gz
test-data/domains.bed
test-data/find_TADs/multiFDR_domains.bed
test-data/small_test_R1_unsorted.sam
test-data/small_test_R2_unsorted.sam
test-data/small_test_matrix.h5

diff -r 2f279a01f3ff -r 1db84db797b1 chicSignificantInteractions.xml
--- a/chicSignificantInteractions.xml Mon Dec 16 15:37:16 2019 -0500
+++ b/chicSignificantInteractions.xml Wed Feb 05 19:52:52 2020 -0500

@@ -63,7 +63,7 @@
                 <option value="optionSinglemode" selected="True">Single file processing</option>
             </param>
             <when value="optionBatchmode">
-                <param name='interactionFilesOrderFile' type="data" format="interval" label="Interaction file order"/>
+                <param name='interactionFilesOrderFile' type="data" format="txt" label="Interaction file order"/>
                 <param name='computeSampleNumber' type="integer" value='2' label="Create one target file for n consecutive files."/>
             </when>
             <when value="optionSinglemode">

diff -r 2f279a01f3ff -r 1db84db797b1 macros.xml
--- a/macros.xml Mon Dec 16 15:37:16 2019 -0500
+++ b/macros.xml Wed Feb 05 19:52:52 2020 -0500

@@ -1,6 +1,6 @@
<macros>
     <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token>
-    <token name="@WRAPPER_VERSION@">3.3.1</token>
+    <token name="@WRAPPER_VERSION@">3.4.1</token>
     <token name="@USE_RANGE@">
         #if $use_range.select_use_range == "yes_use_range":
             --range $range_min:$range_max
@@ -361,7 +361,7 @@
             <param name="inputFormat_selector" type="select" label="Choose input file type">
                 <option value="optionCool" selected="True">cool</option>
                 <option value="optionH5">h5</option>
-                
+                <option value="optionHic">hic</option>
                 <option value="optionHomer">Homer</option>
                 <option value="optionHicpro">HiCPro</option>
             </param>
@@ -376,10 +376,10 @@
             <when value="optionH5">
                 <expand macro='matrix_h5_cooler_macro' />
             </when>
-            
+            </when>

             <when value="optionHomer">
                 <param name='matrixHomer' type='data' format='txt' label='Homer interaction matrix'/>

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,11 +1,4 @@
-# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3
-# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
#Chromosome Start End Gene Sum of interactions Relative distance Raw target
-chr1 14274000 14279000 Eya1 673.0 -22000    7.00000
-chr1 14285000 14308000 Eya1 673.0 7000 389.40000
-chr1 14310000 14322000 Eya1 673.0 21000   54.80000
-chr1 14361000 14407000 Eya1 673.0 106000   21.20000
-chr1 14426000 14432000 Eya1 673.0 131000    2.40000
-chr1 14447000 14455000 Eya1 673.0 154000    4.40000
-chr1 14460000 14465000 Eya1 673.0 164000    3.20000
-chr1 14491000 14500000 Eya1 673.0 199000   17.65000
+chr1 14331000 14344000 Eya1 673.0 43000   11.20000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,7 +1,5 @@
-# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3
-# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
#Chromosome Start End Gene Sum of interactions Relative distance Raw target
-chr1 19077000 19114000 Tfap2d 472.0 20000 344.80000
-chr1 19125000 19129000 Tfap2d 472.0 35000    7.80000
-chr1 19134000 19139000 Tfap2d 472.0 45000    8.40000
-chr1 19141000 19238000 Tfap2d 472.0 144000   47.40000
+chr1 19122000 19131000 Tfap2d 472.0 37000   10.20000
+chr1 19188000 19232000 Tfap2d 472.0 138000   23.40000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,9 +1,6 @@
-# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3
-# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
#Chromosome Start End Gene Sum of interactions Relative distance Raw target
-chr1 4472000 4503000 Sox17 810.0 15000 566.20000
-chr1 4507000 4516000 Sox17 810.0 28000   38.80000
-chr1 4520000 4531000 Sox17 810.0 43000   10.40000
-chr1 4533000 4543000 Sox17 810.0 55000    6.80000
-chr1 4562000 4593000 Sox17 810.0 105000   25.00000
-chr1 4664000 4669000 Sox17 810.0 181000    1.20000
+chr1 4512000 4529000 Sox17 810.0 41000   24.80000
+chr1 4534000 4544000 Sox17 810.0 56000    7.00000
+chr1 4585000 4590000 Sox17 810.0 102000    8.00000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,11 +1,4 @@
-# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3
-# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
#Chromosome Start End Gene Sum of interactions Relative distance Raw target
-chr1 14274000 14279000 Eya1 832.0 -22000    0.00000
-chr1 14285000 14308000 Eya1 832.0 7000 479.80000
-chr1 14310000 14322000 Eya1 832.0 21000   52.80000
-chr1 14361000 14407000 Eya1 832.0 106000   36.00000
-chr1 14426000 14432000 Eya1 832.0 131000    9.00000
-chr1 14447000 14455000 Eya1 832.0 154000   12.40000
-chr1 14460000 14465000 Eya1 832.0 164000    7.60000
-chr1 14491000 14500000 Eya1 832.0 199000   15.75000
+chr1 14331000 14344000 Eya1 832.0 43000   22.80000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,7 +1,5 @@
-# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3
-# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 800.0
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 800.0
#Chromosome Start End Gene Sum of interactions Relative distance Raw target
-chr1 19077000 19114000 Tfap2d 800.0 20000 527.80000
-chr1 19125000 19129000 Tfap2d 800.0 35000    8.80000
-chr1 19134000 19139000 Tfap2d 800.0 45000   11.20000
-chr1 19141000 19238000 Tfap2d 800.0 144000 163.00000
+chr1 19122000 19131000 Tfap2d 800.0 37000   15.80000
+chr1 19188000 19232000 Tfap2d 800.0 138000 115.00000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,9 +1,6 @@
-# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3
-# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
+# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
#Chromosome Start End Gene Sum of interactions Relative distance Raw target
-chr1 4472000 4503000 Sox17 978.0 15000 724.40000
-chr1 4507000 4516000 Sox17 978.0 28000   19.00000
-chr1 4520000 4531000 Sox17 978.0 43000   22.20000
-chr1 4533000 4543000 Sox17 978.0 55000   12.20000
-chr1 4562000 4593000 Sox17 978.0 105000   23.20000
-chr1 4664000 4669000 Sox17 978.0 181000    5.40000
+chr1 4512000 4529000 Sox17 978.0 41000   33.20000
+chr1 4534000 4544000 Sox17 978.0 56000   13.20000
+chr1 4585000 4590000 Sox17 978.0 102000    2.40000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Wed Feb 05 19:52:52 2020 -0500

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
--- a/test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Wed Feb 05 19:52:52 2020 -0500

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,11 +1,10 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by chi2 test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
-# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96904

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,17 +1,11 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by chi2 test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
-# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00335
-chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.21097
-chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.25281
-chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.10924
-chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.12863
-chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.32025
-chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.35033
+chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.17177

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,18 +1,11 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by chi2 test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
-# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00335
-chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96904
-chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.21097
-chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.25281
-chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.10924
-chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.12863
-chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.32025
-chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.35033
+chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.17177

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,11 +1,11 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by chi2 test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
-# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 800.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 800.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.60118
+chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.82442

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,13 +1,11 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by chi2 test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
-# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 800.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 800.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.25943
-chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.40802
-chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00004
+chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,14 +1,12 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by chi2 test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
-# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 800.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 800.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.25943
-chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.40802
-chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.60118
-chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00004
+chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.82442
+chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,10 +1,11 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by chi2 test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
-# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.70171

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,16 +1,12 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by chi2 test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
-# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.43072
-chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00105
-chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.12754
-chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.40725
-chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.36639
-chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.16231
+chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.33893
+chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.04116

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,16 +1,13 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by chi2 test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
-# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.43072
-chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00105
-chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.12754
-chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.40725
-chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.36639
-chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.16231
+chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.70171
+chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.33893
+chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.04116

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,12 +1,10 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by fisher test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
-# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586
-chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,16 +1,11 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by fisher test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
-# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366
-chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002
-chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706
-chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523
-chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210
-chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
+chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,18 +1,11 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by fisher test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
-# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366
-chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586
-chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002
-chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706
-chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523
-chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210
-chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425
-chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
+chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,11 +1,11 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by fisher test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
-# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 800.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 800.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.65094
+chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.69206

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,13 +1,11 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by fisher test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
-# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 800.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 800.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.27744
-chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.45206
-chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00005
+chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,14 +1,12 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by fisher test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
-# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 800.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89  Mbp 19.29  Mbp Tfap2d Sum of interactions in fixate range: 800.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.27744
-chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.45206
-chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.65094
-chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00005
+chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.69206
+chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,10 +1,11 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by fisher test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
-# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
+chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.69177

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,16 +1,12 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by fisher test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
-# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.44082
-chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00117
-chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.16402
-chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.37847
-chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.46860
-chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.30594
+chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.37830
+chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.12513

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed
--- a/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,16 +1,13 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by fisher test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
-# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 810.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29  Mbp 4.69  Mbp Sox17 Sum of interactions in fixate range: 978.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.44082
-chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00117
-chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.16402
-chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.37847
-chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.46860
-chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.30594
+chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.69177
+chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.37830
+chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.12513

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed
--- a/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,12 +1,10 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by fisher test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
-# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586
-chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed
--- a/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,16 +1,11 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by fisher test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
-# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366
-chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002
-chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706
-chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523
-chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210
-chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
+chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed
--- a/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,18 +1,11 @@
-# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3
+# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1
# This file contains the p-values computed by fisher test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
-# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
-# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 673.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10  Mbp 14.50  Mbp Eya1 Sum of interactions in fixate range: 832.0
#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
-chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366
-chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586
-chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002
-chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706
-chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523
-chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210
-chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425
-chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
+chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicPlotViewpoint/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.png

Binary file test-data/cHi-C/chicPlotViewpoint/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.png has changed

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicPlotViewpoint/batchMode/two/Eya1_FL-E13-5_MB-E10-5_chr1_chr1_14300280.png

Binary file test-data/cHi-C/chicPlotViewpoint/batchMode/two/Eya1_FL-E13-5_MB-E10-5_chr1_chr1_14300280.png has changed

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicPlotViewpoint/batchMode/two/Sox17_FL-E13-5_MB-E10-5_chr1_chr1_4487435.png

Binary file test-data/cHi-C/chicPlotViewpoint/batchMode/two/Sox17_FL-E13-5_MB-E10-5_chr1_chr1_4487435.png has changed

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicPlotViewpoint/batchMode/two/Tfap2d_FL-E13-5_MB-E10-5_chr1_chr1_19093103.png

Binary file test-data/cHi-C/chicPlotViewpoint/batchMode/two/Tfap2d_FL-E13-5_MB-E10-5_chr1_chr1_19093103.png has changed

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,8 +1,6 @@
-# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.01042503066537725509 7.81112575817000021061 5.59999999999999964473
-chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.10421572859864158822 3.78135593591500018817 39.00000000000000000000
-chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.05171206541410811042 3.19033393500999995496 10.19999999999999928946
-chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.04670037874744681350 3.51709033858399999772 9.80000000000000071054
-chr1 14480000 14488000 Eya1 673.0 184000 0.01129271916799999900 0.00000005723969254134 19.28508294646199772160 7.59999999999999875655
-chr1 14491000 14501000 Eya1 673.0 200000 0.03068350668399999828 0.00000000000003064216 56.96782483342801128856 20.64999999999999857891
+chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.00283251424532149354 7.81112575817000021061 5.59999999999999964473
+chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.00000000000000000000 3.78135593591500018817 39.00000000000000000000
+chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.00001082770154392509 3.19033393500999995496 10.19999999999999928946
+chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.00008828123932902443 3.51709033858399999772 9.80000000000000071054

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,10 +1,8 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev
-# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_8dty7wuh/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
# Mode: x-fold background with 1.5
# Used p-value: 0.2
#
chr1 14274000 14278000
chr1 14296000 14298000
chr1 14314000 14319000
-chr1 14480000 14488000
-chr1 14491000 14501000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Wed Feb 05 19:52:52 2020 -0500

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,7 +1,3 @@
-# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 14295000 14298000 Eya1 832.0 -3000 0.05985576923100000002 0.06113759528369666629 4.79015312599299925012 49.79999999999999715783
-chr1 14426000 14432000 Eya1 832.0 130000 0.01081730769300000110 0.00000042985602966006 13.72351582211000042832 9.00000000000000000000
-chr1 14447000 14455000 Eya1 832.0 149000 0.01490384615199999950 0.00000000000012301271 22.36493893927400122834 12.39999999999999857891
-chr1 14460000 14465000 Eya1 832.0 162000 0.00913461538499999934 0.00001124312488187673 12.15366029908999934150 7.59999999999999964473
-chr1 14491000 14501000 Eya1 832.0 200000 0.02253605769199999720 0.00000000000003064216 41.39757163433100117800 18.75000000000000000000
+chr1 14295000 14298000 Eya1 832.0 -3000 0.05985576923100000002 0.00000000000000000000 4.79015312599299925012 49.79999999999999715783

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,10 +1,8 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3
-# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_dodw19_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
# Mode: x-fold background with 1.5
# Used p-value: 0.2
#
chr1 14274000 14278000
chr1 14296000 14298000
chr1 14314000 14319000
-chr1 14480000 14488000
-chr1 14491000 14501000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,10 +1,6 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3
-# targetFolder/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_dodw19_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
# Mode: x-fold background with 1.5
# Used p-value: 0.2
#
chr1 14295000 14298000
-chr1 14426000 14432000
-chr1 14447000 14455000
-chr1 14460000 14465000
-chr1 14491000 14501000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Wed Feb 05 19:52:52 2020 -0500

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,10 +1,8 @@
-# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 19089000 19091000 Tfap2d 472.0 -3000 0.06101694915199999680 0.18835888966198111039 4.06818820852600016025 28.80000000000000071054
-chr1 19104000 19106000 Tfap2d 472.0 11000 0.02245762711799999950 0.11671915718551462149 3.62722049649999966903 10.59999999999999964473
-chr1 19109000 19114000 Tfap2d 472.0 18000 0.03940677966200000631 0.00080680261510490681 9.61739201792699915927 18.60000000000000142109
-chr1 19125000 19129000 Tfap2d 472.0 33000 0.01652542372999999884 0.00829653069244939978 7.28507499155399962376 7.79999999999999982236
-chr1 19133000 19138000 Tfap2d 472.0 41000 0.01949152542399999744 0.00041957482022692005 9.72184228688099949522 9.19999999999999928946
-chr1 19197000 19202000 Tfap2d 472.0 108000 0.01059322033899999863 0.00398884532051024809 10.24326734149200035517 5.00000000000000000000
-chr1 19227000 19233000 Tfap2d 472.0 137000 0.01186440677899999914 0.00244241040005155341 14.41899403645599875290 5.59999999999999964473
-chr1 19254000 19261000 Tfap2d 472.0 163000 0.01355932203300000069 0.00004326025137579848 19.68794216164500454624 6.39999999999999946709
+chr1 19089000 19091000 Tfap2d 472.0 -3000 0.06101694915199999680 0.00000000000000000000 4.06818820852600016025 28.80000000000000071054
+chr1 19104000 19106000 Tfap2d 472.0 11000 0.02245762711799999950 0.00000021753312740014 3.62722049649999966903 10.59999999999999964473
+chr1 19109000 19114000 Tfap2d 472.0 18000 0.03940677966200000631 0.00000013791919284412 9.61739201792699915927 18.60000000000000142109
+chr1 19125000 19129000 Tfap2d 472.0 33000 0.01652542372999999884 0.19640940181488197869 7.28507499155399962376 7.79999999999999982236
+chr1 19227000 19233000 Tfap2d 472.0 137000 0.01186440677899999914 0.19195463066672580066 14.41899403645599875290 5.59999999999999964473
+chr1 19097000 19098000 Tfap2d 472.0 4000 0.02542372881399999895 0.00000000000002398082 1.62514514601700010843 12.00000000000000000000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,8 +1,7 @@
-# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 4509000 4515000 Sox17 810.0 23000 0.03432098765399999724 0.00000160319175224188 11.55191083898800030738 27.80000000000000071054
-chr1 4561000 4567000 Sox17 810.0 75000 0.01432098765400000029 0.00000102319718320310 11.23656007944399881637 11.59999999999999964473
-chr1 4585000 4590000 Sox17 810.0 98000 0.00987654320999999807 0.00037019878415911478 8.98479195802099894763 8.00000000000000000000
-chr1 4652000 4658000 Sox17 810.0 169000 0.00740740740700000008 0.00005538687174366785 11.12107213938599947767 6.00000000000000000000
-chr1 4499000 4500000 Sox17 810.0 12000 0.00987654320999999981 0.15859163588059266292 1.65903762227799989049 8.00000000000000000000
-chr1 4501000 4502000 Sox17 810.0 14000 0.00765432098799999957 0.17926099806325068720 1.57677828943600006895 6.20000000000000017764
+chr1 4509000 4515000 Sox17 810.0 23000 0.03432098765399999724 0.00000000034537894766 11.55191083898800030738 27.80000000000000071054
+chr1 4585000 4590000 Sox17 810.0 98000 0.00987654320999999807 0.08235176084316242484 8.98479195802099894763 8.00000000000000000000
+chr1 4484000 4485000 Sox17 810.0 -3000 0.03283950617300000069 0.00000000000000000000 1.52393745982299999575 26.60000000000000142109
+chr1 4499000 4500000 Sox17 810.0 12000 0.00987654320999999981 0.00000762924143549171 1.65903762227799989049 8.00000000000000000000
+chr1 4501000 4502000 Sox17 810.0 14000 0.00765432098799999957 0.00092861255189025105 1.57677828943600006895 6.20000000000000017764

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,10 +1,8 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev
-# chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_83sqy1lg/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed
# Mode: x-fold background with 1.5
# Used p-value: 0.2
#
chr1 14274000 14278000
chr1 14296000 14298000
chr1 14314000 14319000
-chr1 14480000 14488000
-chr1 14491000 14501000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,13 +1,11 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev
-# chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_83sqy1lg/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
# Mode: x-fold background with 1.5
# Used p-value: 0.2
#
chr1 19089000 19091000
+chr1 19097000 19098000
chr1 19104000 19106000
chr1 19109000 19114000
chr1 19125000 19129000
-chr1 19133000 19138000
-chr1 19197000 19202000
chr1 19227000 19233000
-chr1 19254000 19261000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,10 +1,9 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev
-# chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_83sqy1lg/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed
# Mode: x-fold background with 1.5
# Used p-value: 0.2
#
+chr1 4484000 4485000
chr1 4499000 4502000
chr1 4509000 4515000
-chr1 4561000 4567000
chr1 4585000 4590000
-chr1 4652000 4658000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,8 +1,2 @@
-# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0
#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 14274000 14279000 Eya1 673.0 -26000 0.01040118870499999980 0.00284160000885891328 9.15400589712000112286 7.00000000000000000000
-chr1 14285000 14303000 Eya1 673.0 -1000 0.50282317979099999672 0.00136523720299208673 11.07298757284899970443 338.40000000000003410605
-chr1 14304000 14308000 Eya1 673.0 4000 0.05438335809800000364 0.04630738638109899163 4.54925916911999994596 36.60000000000000142109
-chr1 14310000 14322000 Eya1 673.0 11000 0.08142644873500000380 0.00000295000019367997 16.90046348151199850918 54.79999999999999715783
-chr1 14361000 14395000 Eya1 673.0 61000 0.01872213967299999823 0.00000368259652272496 14.85031269307799917101 12.60000000000000142109
-chr1 14491000 14500000 Eya1 673.0 199000 0.02622585438099999874 0.00000000000000932587 49.39210160776001146132 17.64999999999999857891

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,8 +1,3 @@
-# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0
#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 19097000 19099000 Tfap2d 472.0 4000 0.04322033898299999788 0.18510915606880684603 3.09466471690400002359 20.39999999999999857891
-chr1 19103000 19106000 Tfap2d 472.0 11000 0.03305084745700000159 0.03717817323565530963 5.08894228542100002244 15.60000000000000142109
-chr1 19110000 19114000 Tfap2d 472.0 18000 0.03135593220400000047 0.00456343459440844423 7.84960476513000049437 14.79999999999999893419
-chr1 19126000 19129000 Tfap2d 472.0 33000 0.01271186440799999991 0.01781395819889997068 5.68520760692500015665 6.00000000000000000000
-chr1 19134000 19137000 Tfap2d 472.0 41000 0.01271186440799999991 0.00778984492262324579 6.25346808942800080899 6.00000000000000000000
-chr1 19162000 19198000 Tfap2d 472.0 69000 0.02966101695299999674 0.00000060908645727054 24.93693789855100106934 14.00000000000000532907
+chr1 19124000 19130000 Tfap2d 472.0 33000 0.02076271186600000054 0.10353729660313626404 9.16165897065000045529 9.80000000000000071054

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,8 +1,3 @@
-# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0
#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 4483000 4496000 Sox17 810.0 0 0.64098765432000004427 0.00000017949046104970 15.90973968251499925941 519.20000000000004547474
-chr1 4497000 4503000 Sox17 810.0 12000 0.04592592592699999698 0.00009501601454375841 8.17222136878799965132 37.19999999999999573674
-chr1 4507000 4516000 Sox17 810.0 23000 0.04790123456699999643 0.00000000479943529363 15.54534421085400097695 38.80000000000000426326
-chr1 4533000 4543000 Sox17 810.0 46000 0.00839506173000000022 0.00536916279076038450 5.36115769549400056349 6.79999999999999893419
-chr1 4562000 4565000 Sox17 810.0 75000 0.00814814814800000030 0.00087160464483748701 6.21039574622800039094 6.59999999999999964473
-chr1 4567000 4585000 Sox17 810.0 81000 0.00814814814699999987 0.00084968562666110081 6.38963961746400066488 6.60000000000000053291
+chr1 4585000 4590000 Sox17 810.0 98000 0.00987654320999999807 0.08235176084316242484 8.98479195802099894763 8.00000000000000000000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,11 +1,3 @@
-# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0
#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 14295000 14303000 Eya1 832.0 -1000 0.51754807692400006669 0.00019954744684358428 10.99424166368200062038 430.60000000000002273737
-chr1 14304000 14307000 Eya1 832.0 4000 0.03052884615399999862 0.12043367620410594387 2.40926082355099957510 25.39999999999999857891
-chr1 14311000 14322000 Eya1 832.0 11000 0.05841346153899999727 0.00001294028787446333 12.63215080382700250539 48.59999999999999431566
-chr1 14369000 14382000 Eya1 832.0 69000 0.00793269231000000123 0.00220510219722336309 6.44339861264899926852 6.59999999999999875655
-chr1 14391000 14407000 Eya1 832.0 106000 0.01201923077000000006 0.00000515283260571486 11.00547257592000072179 10.00000000000000000000
-chr1 14426000 14432000 Eya1 832.0 130000 0.01081730769300000110 0.00000042985602966006 13.72351582211000042832 9.00000000000000000000
-chr1 14447000 14455000 Eya1 832.0 149000 0.01490384615199999950 0.00000000000012301271 22.36493893927400122834 12.39999999999999857891
-chr1 14460000 14465000 Eya1 832.0 162000 0.00913461538499999934 0.00001124312488187673 12.15366029908999934150 7.59999999999999964473
-chr1 14491000 14500000 Eya1 832.0 199000 0.01893028846099999857 0.00000000000000932587 35.26961282318300305860 15.75000000000000000000
+chr1 14331000 14344000 Eya1 832.0 39000 0.02740384615299999715 0.04109483942319203109 12.88838410144700219462 22.80000000000000071054

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,10 +1,4 @@
-# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0
#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 19077000 19082000 Tfap2d 800.0 -15000 0.01675000000000000100 0.00195382844240210574 8.20856302019300088091 13.40000000000000035527
-chr1 19083000 19095000 Tfap2d 800.0 0 0.41274999999999995026 0.00011621308769860228 18.49630381537900092326 330.19999999999998863132
-chr1 19096000 19114000 Tfap2d 800.0 3000 0.17700000000000001843 0.00042447176642534945 22.86014655871399980924 141.59999999999999431566
-chr1 19125000 19129000 Tfap2d 800.0 33000 0.01099999999999999936 0.00379145119303403444 4.83882643603000062171 8.80000000000000071054
-chr1 19135000 19139000 Tfap2d 800.0 43000 0.01175000000000000003 0.00015657417058367873 6.23967021246500053167 9.40000000000000035527
-chr1 19141000 19170000 Tfap2d 800.0 49000 0.02125000000000001193 0.00000543603606051324 15.65207577841900032922 17.00000000000000355271
-chr1 19195000 19208000 Tfap2d 800.0 105000 0.04900000000000001577 0.00000000000000000000 47.90516101420298866742 39.20000000000000284217
-chr1 19209000 19238000 Tfap2d 800.0 124000 0.09275000000000004075 0.00000000000000000000 112.06129567939001390187 74.20000000000000284217
+chr1 19122000 19131000 Tfap2d 800.0 33000 0.01975000000000000019 0.01215875106169517217 8.65480483946599932210 15.80000000000000071054
+chr1 19188000 19232000 Tfap2d 800.0 105000 0.14375000000000007216 0.00725408648394210154 156.86467065896297867766 114.99999999999997157829

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,9 +1,4 @@
-# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0
#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target
-chr1 4472000 4492000 Sox17 978.0 0 0.66196319018500004994 0.00000000202165995056 17.41734930604599895787 647.40000000000009094947
-chr1 4493000 4496000 Sox17 978.0 6000 0.02576687116499999652 0.03614683764250059550 2.69049295166299984317 25.20000000000000284217
-chr1 4497000 4503000 Sox17 978.0 12000 0.03946830265799999848 0.00007297810251505332 7.02344214143100042946 38.60000000000000142109
-chr1 4520000 4531000 Sox17 978.0 37000 0.02269938650399999994 0.00000000003034350549 10.91808266157200080215 22.20000000000000284217
-chr1 4562000 4566000 Sox17 978.0 78000 0.00920245398800000058 0.00000732123325153378 7.15040494335099996448 9.00000000000000000000
-chr1 4569000 4593000 Sox17 978.0 93000 0.01022494887899999885 0.00001986913191398543 8.54218878677400006438 9.99999999999999822364
-chr1 4664000 4669000 Sox17 978.0 179000 0.00552147239400000052 0.00001416173948909361 8.93206575494200016863 5.40000000000000035527
+chr1 4512000 4529000 Sox17 978.0 37000 0.03394683026800000142 0.03218197542328149474 15.11463155973700089874 33.19999999999999573674
+chr1 4534000 4544000 Sox17 978.0 52000 0.01349693251800000021 0.00199753407269609440 8.80743474809099957668 13.19999999999999928946

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt
--- a/test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt Wed Feb 05 19:52:52 2020 -0500

@@ -3,4 +3,4 @@
FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed
FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
-MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
+MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
\ No newline at end of file

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,13 +1,6 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3
-# targetFolder/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed
# Mode: loose p-value with 0.5
# Used p-value: 0.2
#
-chr1 14274000 14279000
-chr1 14285000 14308000
-chr1 14310000 14322000
-chr1 14361000 14407000
-chr1 14426000 14432000
-chr1 14447000 14455000
-chr1 14460000 14465000
-chr1 14491000 14500000
+chr1 14331000 14344000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,9 +1,7 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3
-# targetFolder/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed
# Mode: loose p-value with 0.5
# Used p-value: 0.2
#
-chr1 19077000 19114000
-chr1 19125000 19129000
-chr1 19134000 19139000
-chr1 19141000 19238000
+chr1 19122000 19131000
+chr1 19188000 19232000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed
--- a/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed Wed Feb 05 19:52:52 2020 -0500

@@ -1,11 +1,8 @@
-# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3
-# targetFolder/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed
+# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1
+# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed
# Mode: loose p-value with 0.5
# Used p-value: 0.2
#
-chr1 4472000 4503000
-chr1 4507000 4516000
-chr1 4520000 4531000
-chr1 4533000 4543000
-chr1 4562000 4593000
-chr1 4664000 4669000
+chr1 4512000 4529000
+chr1 4534000 4544000
+chr1 4585000 4590000

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed
--- a/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed Wed Feb 05 19:52:52 2020 -0500

b"@@ -1,405 +1,405 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev\n-# FL-E13-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 673.0\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 673.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n-chr1\t14100000\t14101000\tEya1\t673.0\t-200000\t0.000000000000\t0.880044890460\t0.000000000000\t0.000000000000\n-chr1\t14101000\t14102000\tEya1\t673.0\t-199000\t0.000000000000\t0.852151439574\t0.000000000000\t0.000000000000\n-chr1\t14102000\t14103000\tEya1\t673.0\t-198000\t0.000000000000\t0.820756603944\t0.000000000000\t0.000000000000\n-chr1\t14103000\t14104000\tEya1\t673.0\t-197000\t0.000000000000\t0.814190727178\t0.000000000000\t0.000000000000\n-chr1\t14104000\t14105000\tEya1\t673.0\t-196000\t0.000000000000\t0.827190062074\t0.000000000000\t0.000000000000\n-chr1\t14105000\t14106000\tEya1\t673.0\t-195000\t0.000000000000\t0.836281106114\t0.000000000000\t0.000000000000\n-chr1\t14106000\t14107000\tEya1\t673.0\t-194000\t0.000000000000\t0.849921252675\t0.000000000000\t0.000000000000\n-chr1\t14107000\t14108000\tEya1\t673.0\t-193000\t0.000000000000\t0.861786083744\t0.000000000000\t0.000000000000\n-chr1\t14108000\t14109000\tEya1\t673.0\t-192000\t0.000000000000\t0.859809384515\t0.000000000000\t0.000000000000\n-chr1\t14109000\t14110000\tEya1\t673.0\t-191000\t0.000000000000\t0.853754951451\t0.000000000000\t0.000000000000\n-chr1\t14110000\t14111000\tEya1\t673.0\t-190000\t0.000000000000\t0.873048946174\t0.000000000000\t0.000000000000\n-chr1\t14111000\t14112000\tEya1\t673.0\t-189000\t0.000000000000\t0.867850964512\t0.000000000000\t0.000000000000\n-chr1\t14112000\t14113000\tEya1\t673.0\t-188000\t0.000000000000\t0.860889061003\t0.000000000000\t0.000000000000\n-chr1\t14113000\t14114000\tEya1\t673.0\t-187000\t0.000000000000\t0.863889228734\t0.000000000000\t0.000000000000\n-chr1\t14114000\t14115000\tEya1\t673.0\t-186000\t0.000000000000\t0.853953368554\t0.000000000000\t0.000000000000\n-chr1\t14115000\t14116000\tEya1\t673.0\t-185000\t0.000000000000\t0.849507893763\t0.000000000000\t0.000000000000\n-chr1\t14116000\t14117000\tEya1\t673.0\t-184000\t0.000000000000\t0.846001342365\t0.000000000000\t0.000000000000\n-chr1\t14117000\t14118000\tEya1\t673.0\t-183000\t0.000000000000\t0.875951792135\t0.000000000000\t0.000000000000\n-chr1\t14118000\t14119000\tEya1\t673.0\t-182000\t0.000000000000\t0.882361637509\t0.000000000000\t0.000000000000\n+chr1\t14100000\t14101000\tEya1\t673.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14101000\t14102000\tEya1\t673.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14102000\t14103000\tEya1\t673.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14103000\t14104000\tEya1\t673.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t14104000\t14105000\tEya1\t673.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14105000\t14106000\tEya1\t673.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14106000\t14107000\tEya1\t673.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14107000\t14108000\tEya1\t673.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14108000\t14109000\tEya1\t673.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14109000\t14110000\tEya1\t673.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14110000\t14111000\tEya1\t673.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14111000\t14112000\tEya1\t673.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14112000\t14113000\tEya1\t673.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14113000\t14114000\tEya1\t673.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14114000\t14115000"..b'44260\t0.800000000000\n+chr1\t14462000\t14463000\tEya1\t673.0\t162000\t0.001188707281\t0.998003530647\t1.616154290340\t0.800000000000\n+chr1\t14463000\t14464000\tEya1\t673.0\t163000\t0.000594353640\t0.999352809734\t0.821489212945\t0.400000000000\n+chr1\t14464000\t14465000\tEya1\t673.0\t164000\t0.000594353640\t0.999664588125\t0.857051516792\t0.400000000000\n+chr1\t14465000\t14466000\tEya1\t673.0\t165000\t0.000000000000\t0.999918251505\t0.000000000000\t0.000000000000\n+chr1\t14466000\t14467000\tEya1\t673.0\t166000\t0.000000000000\t0.989304103068\t0.000000000000\t0.000000000000\n+chr1\t14467000\t14468000\tEya1\t673.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14468000\t14469000\tEya1\t673.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n+chr1\t14469000\t14470000\tEya1\t673.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n+chr1\t14470000\t14471000\tEya1\t673.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n+chr1\t14471000\t14472000\tEya1\t673.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n+chr1\t14472000\t14473000\tEya1\t673.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n+chr1\t14473000\t14474000\tEya1\t673.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n+chr1\t14474000\t14475000\tEya1\t673.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n+chr1\t14475000\t14476000\tEya1\t673.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14476000\t14477000\tEya1\t673.0\t176000\t0.000297176820\t1.000000000000\t0.421231702882\t0.200000000000\n+chr1\t14477000\t14478000\tEya1\t673.0\t177000\t0.000297176820\t1.000000000000\t0.449952046478\t0.200000000000\n+chr1\t14478000\t14479000\tEya1\t673.0\t178000\t0.000594353640\t1.000000000000\t0.933862738240\t0.400000000000\n+chr1\t14479000\t14480000\tEya1\t673.0\t179000\t0.000594353640\t1.000000000000\t0.951821637197\t0.400000000000\n+chr1\t14480000\t14481000\tEya1\t673.0\t180000\t0.001485884101\t0.000000000000\t2.512422592521\t1.000000000000\n+chr1\t14481000\t14482000\tEya1\t673.0\t181000\t0.001188707281\t1.000000000000\t2.020192860178\t0.800000000000\n+chr1\t14482000\t14483000\tEya1\t673.0\t182000\t0.001188707281\t1.000000000000\t2.128805380321\t0.800000000000\n+chr1\t14483000\t14484000\tEya1\t673.0\t183000\t0.001783060921\t0.000000000000\t3.093420317586\t1.200000000000\n+chr1\t14484000\t14485000\tEya1\t673.0\t184000\t0.002080237741\t0.000000000000\t3.380127570538\t1.400000000000\n+chr1\t14485000\t14486000\tEya1\t673.0\t185000\t0.001188707281\t1.000000000000\t1.903643274393\t0.800000000000\n+chr1\t14486000\t14487000\tEya1\t673.0\t186000\t0.001188707281\t1.000000000000\t2.106158514412\t0.800000000000\n+chr1\t14487000\t14488000\tEya1\t673.0\t187000\t0.001188707281\t1.000000000000\t2.140312436513\t0.800000000000\n+chr1\t14488000\t14489000\tEya1\t673.0\t188000\t0.000594353640\t1.000000000000\t1.058710697124\t0.400000000000\n+chr1\t14489000\t14490000\tEya1\t673.0\t189000\t0.000297176820\t1.000000000000\t0.575520059550\t0.200000000000\n+chr1\t14490000\t14491000\tEya1\t673.0\t190000\t0.000297176820\t1.000000000000\t0.578885673960\t0.200000000000\n+chr1\t14491000\t14492000\tEya1\t673.0\t191000\t0.002080237741\t0.000000000000\t3.849589730333\t1.400000000000\n+chr1\t14492000\t14493000\tEya1\t673.0\t192000\t0.003268945022\t0.000000000000\t5.982878858272\t2.200000000000\n+chr1\t14493000\t14494000\tEya1\t673.0\t193000\t0.002971768202\t0.000000000000\t5.892229182196\t2.000000000000\n+chr1\t14494000\t14495000\tEya1\t673.0\t194000\t0.003268945022\t0.000000000000\t6.294126893758\t2.200000000000\n+chr1\t14495000\t14496000\tEya1\t673.0\t195000\t0.003268945022\t0.000000000000\t6.680269651133\t2.200000000000\n+chr1\t14496000\t14497000\tEya1\t673.0\t196000\t0.002971768202\t0.000000000000\t6.072972410121\t2.000000000000\n+chr1\t14497000\t14498000\tEya1\t673.0\t197000\t0.002080237741\t0.000000000000\t3.937080406684\t1.400000000000\n+chr1\t14498000\t14499000\tEya1\t673.0\t198000\t0.002971768202\t0.000000000000\t4.852424033528\t2.000000000000\n+chr1\t14499000\t14500000\tEya1\t673.0\t199000\t0.003343239227\t0.000000000000\t5.830530441735\t2.250000000000\n+chr1\t14500000\t14501000\tEya1\t673.0\t200000\t0.004457652303\t0.000000000000\t7.575723225668\t3.000000000000\n'

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- a/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed Wed Feb 05 19:52:52 2020 -0500

b"@@ -1,405 +1,405 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev\n-# FL-E13-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 472.0\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 472.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n-chr1\t18893000\t18894000\tTfap2d\t472.0\t-200000\t0.001412429379\t0.880044890460\t8.554173074049\t0.666666666667\n-chr1\t18894000\t18895000\tTfap2d\t472.0\t-199000\t0.001059322034\t0.852151439574\t5.040852007510\t0.500000000000\n-chr1\t18895000\t18896000\tTfap2d\t472.0\t-198000\t0.000847457627\t0.820756603944\t3.282415254892\t0.400000000000\n-chr1\t18896000\t18897000\tTfap2d\t472.0\t-197000\t0.000847457627\t0.814190727178\t3.136530131373\t0.400000000000\n-chr1\t18897000\t18898000\tTfap2d\t472.0\t-196000\t0.000000000000\t0.827190062074\t0.000000000000\t0.000000000000\n-chr1\t18898000\t18899000\tTfap2d\t472.0\t-195000\t0.000000000000\t0.836281106114\t0.000000000000\t0.000000000000\n-chr1\t18899000\t18900000\tTfap2d\t472.0\t-194000\t0.000000000000\t0.849921252675\t0.000000000000\t0.000000000000\n-chr1\t18900000\t18901000\tTfap2d\t472.0\t-193000\t0.000000000000\t0.861786083744\t0.000000000000\t0.000000000000\n-chr1\t18901000\t18902000\tTfap2d\t472.0\t-192000\t0.000000000000\t0.859809384515\t0.000000000000\t0.000000000000\n-chr1\t18902000\t18903000\tTfap2d\t472.0\t-191000\t0.000000000000\t0.853754951451\t0.000000000000\t0.000000000000\n-chr1\t18903000\t18904000\tTfap2d\t472.0\t-190000\t0.000000000000\t0.873048946174\t0.000000000000\t0.000000000000\n-chr1\t18904000\t18905000\tTfap2d\t472.0\t-189000\t0.000000000000\t0.867850964512\t0.000000000000\t0.000000000000\n-chr1\t18905000\t18906000\tTfap2d\t472.0\t-188000\t0.000000000000\t0.860889061003\t0.000000000000\t0.000000000000\n-chr1\t18906000\t18907000\tTfap2d\t472.0\t-187000\t0.000000000000\t0.863889228734\t0.000000000000\t0.000000000000\n-chr1\t18907000\t18908000\tTfap2d\t472.0\t-186000\t0.000000000000\t0.853953368554\t0.000000000000\t0.000000000000\n-chr1\t18908000\t18909000\tTfap2d\t472.0\t-185000\t0.000000000000\t0.849507893763\t0.000000000000\t0.000000000000\n-chr1\t18909000\t18910000\tTfap2d\t472.0\t-184000\t0.000000000000\t0.846001342365\t0.000000000000\t0.000000000000\n-chr1\t18910000\t18911000\tTfap2d\t472.0\t-183000\t0.000000000000\t0.875951792135\t0.000000000000\t0.000000000000\n-chr1\t18911000\t18912000\tTfap2d\t472.0\t-182000\t0.000000000000\t0.882361637509\t0.000000000000\t0.000000000000\n+chr1\t18893000\t18894000\tTfap2d\t472.0\t-200000\t0.001412429379\t1.000000000000\t8.554173074049\t0.666666666667\n+chr1\t18894000\t18895000\tTfap2d\t472.0\t-199000\t0.001059322034\t1.000000000000\t5.040852007510\t0.500000000000\n+chr1\t18895000\t18896000\tTfap2d\t472.0\t-198000\t0.000847457627\t1.000000000000\t3.282415254892\t0.400000000000\n+chr1\t18896000\t18897000\tTfap2d\t472.0\t-197000\t0.000847457627\t0.999999994943\t3.136530131373\t0.400000000000\n+chr1\t18897000\t18898000\tTfap2d\t472.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18898000\t18899000\tTfap2d\t472.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18899000\t18900000\tTfap2d\t472.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18900000\t18901000\tTfap2d\t472.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18901000\t18902000\tTfap2d\t472.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18902000\t18903000\tTfap2d\t472.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18903000\t18904000\tTfap2d\t472.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18904000\t18905000\tTfap2d\t472.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18905000\t18906000\tTfap2d\t472.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18906000\t18907000\tTfap2d\t472.0\t-187000\t0.00000000000"..b'4\t0.998003530647\t2.304389486014\t0.800000000000\n+chr1\t19256000\t19257000\tTfap2d\t472.0\t163000\t0.002542372881\t0.000647190266\t3.513954917238\t1.200000000000\n+chr1\t19257000\t19258000\tTfap2d\t472.0\t164000\t0.002118644068\t0.000335411875\t3.055061815685\t1.000000000000\n+chr1\t19258000\t19259000\tTfap2d\t472.0\t165000\t0.002118644068\t0.000081748495\t3.252162579500\t1.000000000000\n+chr1\t19259000\t19260000\tTfap2d\t472.0\t166000\t0.001694915254\t0.989304103068\t2.822877120847\t0.800000000000\n+chr1\t19260000\t19261000\tTfap2d\t472.0\t167000\t0.001694915254\t1.000000000000\t2.701317818024\t0.800000000000\n+chr1\t19261000\t19262000\tTfap2d\t472.0\t168000\t0.000847457627\t0.999999999417\t1.312966101957\t0.400000000000\n+chr1\t19262000\t19263000\tTfap2d\t472.0\t169000\t0.000423728814\t0.997208984795\t0.593041411154\t0.200000000000\n+chr1\t19263000\t19264000\tTfap2d\t472.0\t170000\t0.000423728814\t0.999780212263\t0.573755512251\t0.200000000000\n+chr1\t19264000\t19265000\tTfap2d\t472.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n+chr1\t19265000\t19266000\tTfap2d\t472.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n+chr1\t19266000\t19267000\tTfap2d\t472.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n+chr1\t19267000\t19268000\tTfap2d\t472.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n+chr1\t19268000\t19269000\tTfap2d\t472.0\t175000\t0.000423728814\t1.000000000000\t0.608378689139\t0.200000000000\n+chr1\t19269000\t19270000\tTfap2d\t472.0\t176000\t0.000423728814\t1.000000000000\t0.600612152627\t0.200000000000\n+chr1\t19270000\t19271000\tTfap2d\t472.0\t177000\t0.000423728814\t1.000000000000\t0.641562981525\t0.200000000000\n+chr1\t19271000\t19272000\tTfap2d\t472.0\t178000\t0.000423728814\t1.000000000000\t0.665772905546\t0.200000000000\n+chr1\t19272000\t19273000\tTfap2d\t472.0\t179000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n+chr1\t19273000\t19274000\tTfap2d\t472.0\t180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19274000\t19275000\tTfap2d\t472.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19275000\t19276000\tTfap2d\t472.0\t182000\t0.000423728814\t1.000000000000\t0.758837934828\t0.200000000000\n+chr1\t19276000\t19277000\tTfap2d\t472.0\t183000\t0.000423728814\t1.000000000000\t0.735124249200\t0.200000000000\n+chr1\t19277000\t19278000\tTfap2d\t472.0\t184000\t0.000423728814\t1.000000000000\t0.688506614701\t0.200000000000\n+chr1\t19278000\t19279000\tTfap2d\t472.0\t185000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n+chr1\t19279000\t19280000\tTfap2d\t472.0\t186000\t0.000423728814\t1.000000000000\t0.750765190784\t0.200000000000\n+chr1\t19280000\t19281000\tTfap2d\t472.0\t187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19281000\t19282000\tTfap2d\t472.0\t188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19282000\t19283000\tTfap2d\t472.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19283000\t19284000\tTfap2d\t472.0\t190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19284000\t19285000\tTfap2d\t472.0\t191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19285000\t19286000\tTfap2d\t472.0\t192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19286000\t19287000\tTfap2d\t472.0\t193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19287000\t19288000\tTfap2d\t472.0\t194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19288000\t19289000\tTfap2d\t472.0\t195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19289000\t19290000\tTfap2d\t472.0\t196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19290000\t19291000\tTfap2d\t472.0\t197000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19291000\t19292000\tTfap2d\t472.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19292000\t19293000\tTfap2d\t472.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19293000\t19294000\tTfap2d\t472.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n'

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed
--- a/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed Wed Feb 05 19:52:52 2020 -0500

b"@@ -1,405 +1,405 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev\n-# FL-E13-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 810.0\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 810.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n-chr1\t4287000\t4288000\tSox17\t810.0\t-200000\t0.000000000000\t0.880044890460\t0.000000000000\t0.000000000000\n-chr1\t4288000\t4289000\tSox17\t810.0\t-199000\t0.000000000000\t0.852151439574\t0.000000000000\t0.000000000000\n-chr1\t4289000\t4290000\tSox17\t810.0\t-198000\t0.000000000000\t0.820756603944\t0.000000000000\t0.000000000000\n-chr1\t4290000\t4291000\tSox17\t810.0\t-197000\t0.000000000000\t0.814190727178\t0.000000000000\t0.000000000000\n-chr1\t4291000\t4292000\tSox17\t810.0\t-196000\t0.000000000000\t0.827190062074\t0.000000000000\t0.000000000000\n-chr1\t4292000\t4293000\tSox17\t810.0\t-195000\t0.000000000000\t0.836281106114\t0.000000000000\t0.000000000000\n-chr1\t4293000\t4294000\tSox17\t810.0\t-194000\t0.000000000000\t0.849921252675\t0.000000000000\t0.000000000000\n-chr1\t4294000\t4295000\tSox17\t810.0\t-193000\t0.000000000000\t0.861786083744\t0.000000000000\t0.000000000000\n-chr1\t4295000\t4296000\tSox17\t810.0\t-192000\t0.000000000000\t0.859809384515\t0.000000000000\t0.000000000000\n-chr1\t4296000\t4297000\tSox17\t810.0\t-191000\t0.000000000000\t0.853754951451\t0.000000000000\t0.000000000000\n-chr1\t4297000\t4298000\tSox17\t810.0\t-190000\t0.000000000000\t0.873048946174\t0.000000000000\t0.000000000000\n-chr1\t4298000\t4299000\tSox17\t810.0\t-189000\t0.000000000000\t0.867850964512\t0.000000000000\t0.000000000000\n-chr1\t4299000\t4300000\tSox17\t810.0\t-188000\t0.000000000000\t0.860889061003\t0.000000000000\t0.000000000000\n-chr1\t4300000\t4301000\tSox17\t810.0\t-187000\t0.000000000000\t0.863889228734\t0.000000000000\t0.000000000000\n-chr1\t4301000\t4302000\tSox17\t810.0\t-186000\t0.000000000000\t0.853953368554\t0.000000000000\t0.000000000000\n-chr1\t4302000\t4303000\tSox17\t810.0\t-185000\t0.000000000000\t0.849507893763\t0.000000000000\t0.000000000000\n-chr1\t4303000\t4304000\tSox17\t810.0\t-184000\t0.000000000000\t0.846001342365\t0.000000000000\t0.000000000000\n-chr1\t4304000\t4305000\tSox17\t810.0\t-183000\t0.000000000000\t0.875951792135\t0.000000000000\t0.000000000000\n-chr1\t4305000\t4306000\tSox17\t810.0\t-182000\t0.000000000000\t0.882361637509\t0.000000000000\t0.000000000000\n+chr1\t4287000\t4288000\tSox17\t810.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4288000\t4289000\tSox17\t810.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4289000\t4290000\tSox17\t810.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4290000\t4291000\tSox17\t810.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t4291000\t4292000\tSox17\t810.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4292000\t4293000\tSox17\t810.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4293000\t4294000\tSox17\t810.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4294000\t4295000\tSox17\t810.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4295000\t4296000\tSox17\t810.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4296000\t4297000\tSox17\t810.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4297000\t4298000\tSox17\t810.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4298000\t4299000\tSox17\t810.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4299000\t4300000\tSox17\t810.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4300000\t4301000\tSox17\t810.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4301000\t4302000\tSox17\t810.0\t-186000\t0.000000000000\t1.000"..b'0.000493827160\t1.000000000000\t0.593839639683\t0.400000000000\n+chr1\t4649000\t4650000\tSox17\t810.0\t162000\t0.000493827160\t0.998003530647\t0.671402368765\t0.400000000000\n+chr1\t4650000\t4651000\tSox17\t810.0\t163000\t0.000493827160\t0.999352809734\t0.682545975694\t0.400000000000\n+chr1\t4651000\t4652000\tSox17\t810.0\t164000\t0.000493827160\t0.999664588125\t0.712093420742\t0.400000000000\n+chr1\t4652000\t4653000\tSox17\t810.0\t165000\t0.000987654321\t0.999918251505\t1.516069864221\t0.800000000000\n+chr1\t4653000\t4654000\tSox17\t810.0\t166000\t0.000987654321\t0.989304103068\t1.644935803753\t0.800000000000\n+chr1\t4654000\t4655000\tSox17\t810.0\t167000\t0.000987654321\t1.000000000000\t1.574101247046\t0.800000000000\n+chr1\t4655000\t4656000\tSox17\t810.0\t168000\t0.001481481481\t0.000000000583\t2.295259259717\t1.200000000000\n+chr1\t4656000\t4657000\tSox17\t810.0\t169000\t0.001728395062\t0.002791015205\t2.419023237597\t1.400000000000\n+chr1\t4657000\t4658000\tSox17\t810.0\t170000\t0.001234567901\t0.000219787737\t1.671682727052\t1.000000000000\n+chr1\t4658000\t4659000\tSox17\t810.0\t171000\t0.000987654321\t0.981475867334\t1.353856628464\t0.800000000000\n+chr1\t4659000\t4660000\tSox17\t810.0\t172000\t0.000987654321\t0.944032684304\t1.270220697103\t0.800000000000\n+chr1\t4660000\t4661000\tSox17\t810.0\t173000\t0.000493827160\t0.999936032663\t0.647612520865\t0.400000000000\n+chr1\t4661000\t4662000\tSox17\t810.0\t174000\t0.000246913580\t0.999594131731\t0.342694958640\t0.200000000000\n+chr1\t4662000\t4663000\tSox17\t810.0\t175000\t0.000246913580\t1.000000000000\t0.354512026264\t0.200000000000\n+chr1\t4663000\t4664000\tSox17\t810.0\t176000\t0.000246913580\t1.000000000000\t0.349986340790\t0.200000000000\n+chr1\t4664000\t4665000\tSox17\t810.0\t177000\t0.000246913580\t1.000000000000\t0.373849046024\t0.200000000000\n+chr1\t4665000\t4666000\tSox17\t810.0\t178000\t0.000493827160\t1.000000000000\t0.775913114612\t0.400000000000\n+chr1\t4666000\t4667000\tSox17\t810.0\t179000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n+chr1\t4667000\t4668000\tSox17\t810.0\t180000\t0.000246913580\t1.000000000000\t0.417496396239\t0.200000000000\n+chr1\t4668000\t4669000\tSox17\t810.0\t181000\t0.000246913580\t1.000000000000\t0.419626479907\t0.200000000000\n+chr1\t4669000\t4670000\tSox17\t810.0\t182000\t0.000246913580\t1.000000000000\t0.442187043505\t0.200000000000\n+chr1\t4670000\t4671000\tSox17\t810.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4671000\t4672000\tSox17\t810.0\t184000\t0.000246913580\t1.000000000000\t0.401203854492\t0.200000000000\n+chr1\t4672000\t4673000\tSox17\t810.0\t185000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n+chr1\t4673000\t4674000\tSox17\t810.0\t186000\t0.000246913580\t1.000000000000\t0.437482925987\t0.200000000000\n+chr1\t4674000\t4675000\tSox17\t810.0\t187000\t0.000246913580\t1.000000000000\t0.444577243757\t0.200000000000\n+chr1\t4675000\t4676000\tSox17\t810.0\t188000\t0.000493827160\t1.000000000000\t0.879644813784\t0.400000000000\n+chr1\t4676000\t4677000\tSox17\t810.0\t189000\t0.000246913580\t1.000000000000\t0.478179012441\t0.200000000000\n+chr1\t4677000\t4678000\tSox17\t810.0\t190000\t0.000246913580\t1.000000000000\t0.480975380957\t0.200000000000\n+chr1\t4678000\t4679000\tSox17\t810.0\t191000\t0.000740740741\t1.000000000000\t1.370779835192\t0.600000000000\n+chr1\t4679000\t4680000\tSox17\t810.0\t192000\t0.000740740741\t1.000000000000\t1.355716320410\t0.600000000000\n+chr1\t4680000\t4681000\tSox17\t810.0\t193000\t0.000740740741\t1.000000000000\t1.468692681340\t0.600000000000\n+chr1\t4681000\t4682000\tSox17\t810.0\t194000\t0.000740740741\t1.000000000000\t1.426244915656\t0.600000000000\n+chr1\t4682000\t4683000\tSox17\t810.0\t195000\t0.000740740741\t1.000000000000\t1.513744604449\t0.600000000000\n+chr1\t4683000\t4684000\tSox17\t810.0\t196000\t0.000493827160\t1.000000000000\t1.009163069632\t0.400000000000\n+chr1\t4684000\t4685000\tSox17\t810.0\t197000\t0.000493827160\t1.000000000000\t0.934622615061\t0.400000000000\n+chr1\t4685000\t4686000\tSox17\t810.0\t198000\t0.000246913580\t1.000000000000\t0.403170540070\t0.200000000000\n+chr1\t4686000\t4687000\tSox17\t810.0\t199000\t0.000308641975\t1.000000000000\t0.538264332961\t0.250000000000\n+chr1\t4687000\t4688000\tSox17\t810.0\t200000\t0.000411522634\t1.000000000000\t0.699377466512\t0.333333333333\n'

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed
--- a/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed Wed Feb 05 19:52:52 2020 -0500

b"@@ -1,405 +1,405 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev\n-# MB-E10-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 832.0\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 832.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n-chr1\t14100000\t14101000\tEya1\t832.0\t-200000\t0.000400641026\t0.880044890460\t2.426424093120\t0.333333333333\n-chr1\t14101000\t14102000\tEya1\t832.0\t-199000\t0.000300480769\t0.852151439574\t1.429857059822\t0.250000000000\n-chr1\t14102000\t14103000\tEya1\t832.0\t-198000\t0.000240384615\t0.820756603944\t0.931069711724\t0.200000000000\n-chr1\t14103000\t14104000\tEya1\t832.0\t-197000\t0.000240384615\t0.814190727178\t0.889688835341\t0.200000000000\n-chr1\t14104000\t14105000\tEya1\t832.0\t-196000\t0.000240384615\t0.827190062074\t0.976487746811\t0.200000000000\n-chr1\t14105000\t14106000\tEya1\t832.0\t-195000\t0.000000000000\t0.836281106114\t0.000000000000\t0.000000000000\n-chr1\t14106000\t14107000\tEya1\t832.0\t-194000\t0.000000000000\t0.849921252675\t0.000000000000\t0.000000000000\n-chr1\t14107000\t14108000\tEya1\t832.0\t-193000\t0.000000000000\t0.861786083744\t0.000000000000\t0.000000000000\n-chr1\t14108000\t14109000\tEya1\t832.0\t-192000\t0.000000000000\t0.859809384515\t0.000000000000\t0.000000000000\n-chr1\t14109000\t14110000\tEya1\t832.0\t-191000\t0.000000000000\t0.853754951451\t0.000000000000\t0.000000000000\n-chr1\t14110000\t14111000\tEya1\t832.0\t-190000\t0.000000000000\t0.873048946174\t0.000000000000\t0.000000000000\n-chr1\t14111000\t14112000\tEya1\t832.0\t-189000\t0.000000000000\t0.867850964512\t0.000000000000\t0.000000000000\n-chr1\t14112000\t14113000\tEya1\t832.0\t-188000\t0.000000000000\t0.860889061003\t0.000000000000\t0.000000000000\n-chr1\t14113000\t14114000\tEya1\t832.0\t-187000\t0.000000000000\t0.863889228734\t0.000000000000\t0.000000000000\n-chr1\t14114000\t14115000\tEya1\t832.0\t-186000\t0.000000000000\t0.853953368554\t0.000000000000\t0.000000000000\n-chr1\t14115000\t14116000\tEya1\t832.0\t-185000\t0.000000000000\t0.849507893763\t0.000000000000\t0.000000000000\n-chr1\t14116000\t14117000\tEya1\t832.0\t-184000\t0.000000000000\t0.846001342365\t0.000000000000\t0.000000000000\n-chr1\t14117000\t14118000\tEya1\t832.0\t-183000\t0.000000000000\t0.875951792135\t0.000000000000\t0.000000000000\n-chr1\t14118000\t14119000\tEya1\t832.0\t-182000\t0.000000000000\t0.882361637509\t0.000000000000\t0.000000000000\n+chr1\t14100000\t14101000\tEya1\t832.0\t-200000\t0.000400641026\t1.000000000000\t2.426424093120\t0.333333333333\n+chr1\t14101000\t14102000\tEya1\t832.0\t-199000\t0.000300480769\t1.000000000000\t1.429857059822\t0.250000000000\n+chr1\t14102000\t14103000\tEya1\t832.0\t-198000\t0.000240384615\t1.000000000000\t0.931069711724\t0.200000000000\n+chr1\t14103000\t14104000\tEya1\t832.0\t-197000\t0.000240384615\t0.999999994943\t0.889688835341\t0.200000000000\n+chr1\t14104000\t14105000\tEya1\t832.0\t-196000\t0.000240384615\t1.000000000000\t0.976487746811\t0.200000000000\n+chr1\t14105000\t14106000\tEya1\t832.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14106000\t14107000\tEya1\t832.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14107000\t14108000\tEya1\t832.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14108000\t14109000\tEya1\t832.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14109000\t14110000\tEya1\t832.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14110000\t14111000\tEya1\t832.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14111000\t14112000\tEya1\t832.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14112000\t14113000\tEya1\t832.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14113000\t14114000\tEya1\t832.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14114000\t14115000"..b'96844\t1.600000000000\n+chr1\t14462000\t14463000\tEya1\t832.0\t162000\t0.002163461538\t0.001996469353\t2.941420233350\t1.800000000000\n+chr1\t14463000\t14464000\tEya1\t832.0\t163000\t0.001682692308\t0.000647190266\t2.325742597467\t1.400000000000\n+chr1\t14464000\t14465000\tEya1\t832.0\t164000\t0.001682692308\t0.000335411875\t2.426424095919\t1.400000000000\n+chr1\t14465000\t14466000\tEya1\t832.0\t165000\t0.000721153846\t0.999918251505\t1.106986108791\t0.600000000000\n+chr1\t14466000\t14467000\tEya1\t832.0\t166000\t0.000240384615\t0.989304103068\t0.400359976274\t0.200000000000\n+chr1\t14467000\t14468000\tEya1\t832.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14468000\t14469000\tEya1\t832.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n+chr1\t14469000\t14470000\tEya1\t832.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n+chr1\t14470000\t14471000\tEya1\t832.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n+chr1\t14471000\t14472000\tEya1\t832.0\t171000\t0.000480769231\t0.981475867334\t0.659028767461\t0.400000000000\n+chr1\t14472000\t14473000\tEya1\t832.0\t172000\t0.000480769231\t0.944032684304\t0.618316565296\t0.400000000000\n+chr1\t14473000\t14474000\tEya1\t832.0\t173000\t0.000480769231\t0.999936032663\t0.630488151323\t0.400000000000\n+chr1\t14474000\t14475000\tEya1\t832.0\t174000\t0.000480769231\t0.999594131731\t0.667266626197\t0.400000000000\n+chr1\t14475000\t14476000\tEya1\t832.0\t175000\t0.000480769231\t1.000000000000\t0.690275820369\t0.400000000000\n+chr1\t14476000\t14477000\tEya1\t832.0\t176000\t0.000240384615\t1.000000000000\t0.340731894279\t0.200000000000\n+chr1\t14477000\t14478000\tEya1\t832.0\t177000\t0.000480769231\t1.000000000000\t0.727927229038\t0.400000000000\n+chr1\t14478000\t14479000\tEya1\t832.0\t178000\t0.000480769231\t1.000000000000\t0.755396181293\t0.400000000000\n+chr1\t14479000\t14480000\tEya1\t832.0\t179000\t0.000480769231\t1.000000000000\t0.769923031050\t0.400000000000\n+chr1\t14480000\t14481000\tEya1\t832.0\t180000\t0.000480769231\t1.000000000000\t0.812913656138\t0.400000000000\n+chr1\t14481000\t14482000\tEya1\t832.0\t181000\t0.000240384615\t1.000000000000\t0.408530587410\t0.200000000000\n+chr1\t14482000\t14483000\tEya1\t832.0\t182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14483000\t14484000\tEya1\t832.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14484000\t14485000\tEya1\t832.0\t184000\t0.000240384615\t1.000000000000\t0.390595098725\t0.200000000000\n+chr1\t14485000\t14486000\tEya1\t832.0\t185000\t0.000961538462\t1.000000000000\t1.539846062099\t0.800000000000\n+chr1\t14486000\t14487000\tEya1\t832.0\t186000\t0.000961538462\t1.000000000000\t1.703659471393\t0.800000000000\n+chr1\t14487000\t14488000\tEya1\t832.0\t187000\t0.000961538462\t1.000000000000\t1.731286381939\t0.800000000000\n+chr1\t14488000\t14489000\tEya1\t832.0\t188000\t0.001201923077\t0.000000000000\t2.140962437394\t1.000000000000\n+chr1\t14489000\t14490000\tEya1\t832.0\t189000\t0.001442307692\t0.000000000000\t2.793209135173\t1.200000000000\n+chr1\t14490000\t14491000\tEya1\t832.0\t190000\t0.000721153846\t1.000000000000\t1.404771845823\t0.600000000000\n+chr1\t14491000\t14492000\tEya1\t832.0\t191000\t0.001442307692\t0.000000000000\t2.669066506024\t1.200000000000\n+chr1\t14492000\t14493000\tEya1\t832.0\t192000\t0.002403846154\t0.000000000000\t4.399560174407\t2.000000000000\n+chr1\t14493000\t14494000\tEya1\t832.0\t193000\t0.002163461538\t0.000000000000\t4.289571172663\t1.800000000000\n+chr1\t14494000\t14495000\tEya1\t832.0\t194000\t0.001682692308\t0.000000000000\t3.239907320421\t1.400000000000\n+chr1\t14495000\t14496000\tEya1\t832.0\t195000\t0.002163461538\t0.000000000000\t4.421153111551\t1.800000000000\n+chr1\t14496000\t14497000\tEya1\t832.0\t196000\t0.001682692308\t0.000000000000\t3.438674642317\t1.400000000000\n+chr1\t14497000\t14498000\tEya1\t832.0\t197000\t0.001442307692\t0.000000000000\t2.729727108893\t1.200000000000\n+chr1\t14498000\t14499000\tEya1\t832.0\t198000\t0.002644230769\t0.000000000000\t4.317607586564\t2.200000000000\n+chr1\t14499000\t14500000\tEya1\t832.0\t199000\t0.003305288462\t0.000000000000\t5.764345200343\t2.750000000000\n+chr1\t14500000\t14501000\tEya1\t832.0\t200000\t0.003605769231\t0.000000000000\t6.127958811148\t3.000000000000\n'

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- a/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed Wed Feb 05 19:52:52 2020 -0500

b"@@ -1,405 +1,405 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev\n-# MB-E10-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 800.0\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 800.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n-chr1\t18893000\t18894000\tTfap2d\t800.0\t-200000\t0.000000000000\t0.880044890460\t0.000000000000\t0.000000000000\n-chr1\t18894000\t18895000\tTfap2d\t800.0\t-199000\t0.000000000000\t0.852151439574\t0.000000000000\t0.000000000000\n-chr1\t18895000\t18896000\tTfap2d\t800.0\t-198000\t0.000000000000\t0.820756603944\t0.000000000000\t0.000000000000\n-chr1\t18896000\t18897000\tTfap2d\t800.0\t-197000\t0.000000000000\t0.814190727178\t0.000000000000\t0.000000000000\n-chr1\t18897000\t18898000\tTfap2d\t800.0\t-196000\t0.000000000000\t0.827190062074\t0.000000000000\t0.000000000000\n-chr1\t18898000\t18899000\tTfap2d\t800.0\t-195000\t0.000000000000\t0.836281106114\t0.000000000000\t0.000000000000\n-chr1\t18899000\t18900000\tTfap2d\t800.0\t-194000\t0.000000000000\t0.849921252675\t0.000000000000\t0.000000000000\n-chr1\t18900000\t18901000\tTfap2d\t800.0\t-193000\t0.000000000000\t0.861786083744\t0.000000000000\t0.000000000000\n-chr1\t18901000\t18902000\tTfap2d\t800.0\t-192000\t0.000000000000\t0.859809384515\t0.000000000000\t0.000000000000\n-chr1\t18902000\t18903000\tTfap2d\t800.0\t-191000\t0.000000000000\t0.853754951451\t0.000000000000\t0.000000000000\n-chr1\t18903000\t18904000\tTfap2d\t800.0\t-190000\t0.000000000000\t0.873048946174\t0.000000000000\t0.000000000000\n-chr1\t18904000\t18905000\tTfap2d\t800.0\t-189000\t0.000000000000\t0.867850964512\t0.000000000000\t0.000000000000\n-chr1\t18905000\t18906000\tTfap2d\t800.0\t-188000\t0.000000000000\t0.860889061003\t0.000000000000\t0.000000000000\n-chr1\t18906000\t18907000\tTfap2d\t800.0\t-187000\t0.000000000000\t0.863889228734\t0.000000000000\t0.000000000000\n-chr1\t18907000\t18908000\tTfap2d\t800.0\t-186000\t0.000000000000\t0.853953368554\t0.000000000000\t0.000000000000\n-chr1\t18908000\t18909000\tTfap2d\t800.0\t-185000\t0.000000000000\t0.849507893763\t0.000000000000\t0.000000000000\n-chr1\t18909000\t18910000\tTfap2d\t800.0\t-184000\t0.000000000000\t0.846001342365\t0.000000000000\t0.000000000000\n-chr1\t18910000\t18911000\tTfap2d\t800.0\t-183000\t0.000000000000\t0.875951792135\t0.000000000000\t0.000000000000\n-chr1\t18911000\t18912000\tTfap2d\t800.0\t-182000\t0.000000000000\t0.882361637509\t0.000000000000\t0.000000000000\n+chr1\t18893000\t18894000\tTfap2d\t800.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18894000\t18895000\tTfap2d\t800.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18895000\t18896000\tTfap2d\t800.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18896000\t18897000\tTfap2d\t800.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t18897000\t18898000\tTfap2d\t800.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18898000\t18899000\tTfap2d\t800.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18899000\t18900000\tTfap2d\t800.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18900000\t18901000\tTfap2d\t800.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18901000\t18902000\tTfap2d\t800.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18902000\t18903000\tTfap2d\t800.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18903000\t18904000\tTfap2d\t800.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18904000\t18905000\tTfap2d\t800.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18905000\t18906000\tTfap2d\t800.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18906000\t18907000\tTfap2d\t800.0\t-187000\t0.00000000000"..b'0\t0.998003530647\t0.000000000000\t0.000000000000\n+chr1\t19256000\t19257000\tTfap2d\t800.0\t163000\t0.000000000000\t0.999352809734\t0.000000000000\t0.000000000000\n+chr1\t19257000\t19258000\tTfap2d\t800.0\t164000\t0.000000000000\t0.999664588125\t0.000000000000\t0.000000000000\n+chr1\t19258000\t19259000\tTfap2d\t800.0\t165000\t0.000250000000\t0.999918251505\t0.383755184381\t0.200000000000\n+chr1\t19259000\t19260000\tTfap2d\t800.0\t166000\t0.000500000000\t0.989304103068\t0.832748750650\t0.400000000000\n+chr1\t19260000\t19261000\tTfap2d\t800.0\t167000\t0.000750000000\t1.000000000000\t1.195333134476\t0.600000000000\n+chr1\t19261000\t19262000\tTfap2d\t800.0\t168000\t0.000750000000\t0.999999999417\t1.161975000232\t0.600000000000\n+chr1\t19262000\t19263000\tTfap2d\t800.0\t169000\t0.001000000000\t0.997208984795\t1.399577730324\t0.800000000000\n+chr1\t19263000\t19264000\tTfap2d\t800.0\t170000\t0.000750000000\t0.999780212263\t1.015547256684\t0.600000000000\n+chr1\t19264000\t19265000\tTfap2d\t800.0\t171000\t0.000750000000\t0.981475867334\t1.028084877240\t0.600000000000\n+chr1\t19265000\t19266000\tTfap2d\t800.0\t172000\t0.000500000000\t0.944032684304\t0.643049227908\t0.400000000000\n+chr1\t19266000\t19267000\tTfap2d\t800.0\t173000\t0.000750000000\t0.999936032663\t0.983561516064\t0.600000000000\n+chr1\t19267000\t19268000\tTfap2d\t800.0\t174000\t0.000500000000\t0.999594131731\t0.693957291245\t0.400000000000\n+chr1\t19268000\t19269000\tTfap2d\t800.0\t175000\t0.000750000000\t1.000000000000\t1.076830279776\t0.600000000000\n+chr1\t19269000\t19270000\tTfap2d\t800.0\t176000\t0.000750000000\t1.000000000000\t1.063083510150\t0.600000000000\n+chr1\t19270000\t19271000\tTfap2d\t800.0\t177000\t0.000750000000\t1.000000000000\t1.135566477299\t0.600000000000\n+chr1\t19271000\t19272000\tTfap2d\t800.0\t178000\t0.000500000000\t1.000000000000\t0.785612028545\t0.400000000000\n+chr1\t19272000\t19273000\tTfap2d\t800.0\t179000\t0.000500000000\t1.000000000000\t0.800719952292\t0.400000000000\n+chr1\t19273000\t19274000\tTfap2d\t800.0\t180000\t0.000250000000\t1.000000000000\t0.422715101192\t0.200000000000\n+chr1\t19274000\t19275000\tTfap2d\t800.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19275000\t19276000\tTfap2d\t800.0\t182000\t0.000250000000\t1.000000000000\t0.447714381549\t0.200000000000\n+chr1\t19276000\t19277000\tTfap2d\t800.0\t183000\t0.000250000000\t1.000000000000\t0.433723307028\t0.200000000000\n+chr1\t19277000\t19278000\tTfap2d\t800.0\t184000\t0.000750000000\t1.000000000000\t1.218656708021\t0.600000000000\n+chr1\t19278000\t19279000\tTfap2d\t800.0\t185000\t0.000750000000\t1.000000000000\t1.201079928437\t0.600000000000\n+chr1\t19279000\t19280000\tTfap2d\t800.0\t186000\t0.000750000000\t1.000000000000\t1.328854387687\t0.600000000000\n+chr1\t19280000\t19281000\tTfap2d\t800.0\t187000\t0.000500000000\t1.000000000000\t0.900268918608\t0.400000000000\n+chr1\t19281000\t19282000\tTfap2d\t800.0\t188000\t0.000500000000\t1.000000000000\t0.890640373956\t0.400000000000\n+chr1\t19282000\t19283000\tTfap2d\t800.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19283000\t19284000\tTfap2d\t800.0\t190000\t0.000250000000\t1.000000000000\t0.486987573219\t0.200000000000\n+chr1\t19284000\t19285000\tTfap2d\t800.0\t191000\t0.000250000000\t1.000000000000\t0.462638194377\t0.200000000000\n+chr1\t19285000\t19286000\tTfap2d\t800.0\t192000\t0.000250000000\t1.000000000000\t0.457554258138\t0.200000000000\n+chr1\t19286000\t19287000\tTfap2d\t800.0\t193000\t0.000500000000\t1.000000000000\t0.991367559904\t0.400000000000\n+chr1\t19287000\t19288000\tTfap2d\t800.0\t194000\t0.000500000000\t1.000000000000\t0.962715318068\t0.400000000000\n+chr1\t19288000\t19289000\tTfap2d\t800.0\t195000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n+chr1\t19289000\t19290000\tTfap2d\t800.0\t196000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n+chr1\t19290000\t19291000\tTfap2d\t800.0\t197000\t0.000250000000\t1.000000000000\t0.473152698875\t0.200000000000\n+chr1\t19291000\t19292000\tTfap2d\t800.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19292000\t19293000\tTfap2d\t800.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19293000\t19294000\tTfap2d\t800.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n'

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed
--- a/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed Wed Feb 05 19:52:52 2020 -0500

b"@@ -1,405 +1,405 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev\n-# MB-E10-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 978.0\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.3.1\n+# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 978.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n-chr1\t4287000\t4288000\tSox17\t978.0\t-200000\t0.000000000000\t0.880044890460\t0.000000000000\t0.000000000000\n-chr1\t4288000\t4289000\tSox17\t978.0\t-199000\t0.000000000000\t0.852151439574\t0.000000000000\t0.000000000000\n-chr1\t4289000\t4290000\tSox17\t978.0\t-198000\t0.000000000000\t0.820756603944\t0.000000000000\t0.000000000000\n-chr1\t4290000\t4291000\tSox17\t978.0\t-197000\t0.000000000000\t0.814190727178\t0.000000000000\t0.000000000000\n-chr1\t4291000\t4292000\tSox17\t978.0\t-196000\t0.000000000000\t0.827190062074\t0.000000000000\t0.000000000000\n-chr1\t4292000\t4293000\tSox17\t978.0\t-195000\t0.000000000000\t0.836281106114\t0.000000000000\t0.000000000000\n-chr1\t4293000\t4294000\tSox17\t978.0\t-194000\t0.000000000000\t0.849921252675\t0.000000000000\t0.000000000000\n-chr1\t4294000\t4295000\tSox17\t978.0\t-193000\t0.000000000000\t0.861786083744\t0.000000000000\t0.000000000000\n-chr1\t4295000\t4296000\tSox17\t978.0\t-192000\t0.000000000000\t0.859809384515\t0.000000000000\t0.000000000000\n-chr1\t4296000\t4297000\tSox17\t978.0\t-191000\t0.000000000000\t0.853754951451\t0.000000000000\t0.000000000000\n-chr1\t4297000\t4298000\tSox17\t978.0\t-190000\t0.000000000000\t0.873048946174\t0.000000000000\t0.000000000000\n-chr1\t4298000\t4299000\tSox17\t978.0\t-189000\t0.000000000000\t0.867850964512\t0.000000000000\t0.000000000000\n-chr1\t4299000\t4300000\tSox17\t978.0\t-188000\t0.000000000000\t0.860889061003\t0.000000000000\t0.000000000000\n-chr1\t4300000\t4301000\tSox17\t978.0\t-187000\t0.000000000000\t0.863889228734\t0.000000000000\t0.000000000000\n-chr1\t4301000\t4302000\tSox17\t978.0\t-186000\t0.000000000000\t0.853953368554\t0.000000000000\t0.000000000000\n-chr1\t4302000\t4303000\tSox17\t978.0\t-185000\t0.000000000000\t0.849507893763\t0.000000000000\t0.000000000000\n-chr1\t4303000\t4304000\tSox17\t978.0\t-184000\t0.000000000000\t0.846001342365\t0.000000000000\t0.000000000000\n-chr1\t4304000\t4305000\tSox17\t978.0\t-183000\t0.000000000000\t0.875951792135\t0.000000000000\t0.000000000000\n-chr1\t4305000\t4306000\tSox17\t978.0\t-182000\t0.000000000000\t0.882361637509\t0.000000000000\t0.000000000000\n+chr1\t4287000\t4288000\tSox17\t978.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4288000\t4289000\tSox17\t978.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4289000\t4290000\tSox17\t978.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4290000\t4291000\tSox17\t978.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t4291000\t4292000\tSox17\t978.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4292000\t4293000\tSox17\t978.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4293000\t4294000\tSox17\t978.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4294000\t4295000\tSox17\t978.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4295000\t4296000\tSox17\t978.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4296000\t4297000\tSox17\t978.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4297000\t4298000\tSox17\t978.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4298000\t4299000\tSox17\t978.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4299000\t4300000\tSox17\t978.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4300000\t4301000\tSox17\t978.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4301000\t4302000\tSox17\t978.0\t-186000\t0.000000000000\t1.000"..b'0.000613496933\t1.000000000000\t0.737745564637\t0.600000000000\n+chr1\t4649000\t4650000\tSox17\t978.0\t162000\t0.000408997955\t0.998003530647\t0.556069446523\t0.400000000000\n+chr1\t4650000\t4651000\tSox17\t978.0\t163000\t0.000204498978\t0.999352809734\t0.282649407113\t0.200000000000\n+chr1\t4651000\t4652000\tSox17\t978.0\t164000\t0.000204498978\t0.999664588125\t0.294885312271\t0.200000000000\n+chr1\t4652000\t4653000\tSox17\t978.0\t165000\t0.000204498978\t0.999918251505\t0.313910171273\t0.200000000000\n+chr1\t4653000\t4654000\tSox17\t978.0\t166000\t0.000817995910\t0.989304103068\t1.362370144213\t0.800000000000\n+chr1\t4654000\t4655000\tSox17\t978.0\t167000\t0.000817995910\t1.000000000000\t1.303703486817\t0.800000000000\n+chr1\t4655000\t4656000\tSox17\t978.0\t168000\t0.000817995910\t0.999999999417\t1.267321063648\t0.800000000000\n+chr1\t4656000\t4657000\tSox17\t978.0\t169000\t0.001226993865\t0.002791015205\t1.717273288741\t1.200000000000\n+chr1\t4657000\t4658000\tSox17\t978.0\t170000\t0.001226993865\t0.000219787737\t1.661427004800\t1.200000000000\n+chr1\t4658000\t4659000\tSox17\t978.0\t171000\t0.000613496933\t0.981475867334\t0.840969224736\t0.600000000000\n+chr1\t4659000\t4660000\tSox17\t978.0\t172000\t0.000613496933\t0.944032684304\t0.789017457556\t0.600000000000\n+chr1\t4660000\t4661000\tSox17\t978.0\t173000\t0.000613496933\t0.999936032663\t0.804549297394\t0.600000000000\n+chr1\t4661000\t4662000\tSox17\t978.0\t174000\t0.000204498978\t0.999594131731\t0.283827112984\t0.200000000000\n+chr1\t4662000\t4663000\tSox17\t978.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4663000\t4664000\tSox17\t978.0\t176000\t0.000408997955\t1.000000000000\t0.579731975542\t0.400000000000\n+chr1\t4664000\t4665000\tSox17\t978.0\t177000\t0.001022494888\t0.000000000000\t1.548147889979\t1.000000000000\n+chr1\t4665000\t4666000\tSox17\t978.0\t178000\t0.001022494888\t0.000000000000\t1.606568565531\t1.000000000000\n+chr1\t4666000\t4667000\tSox17\t978.0\t179000\t0.001226993865\t0.000000000000\t1.964956938139\t1.200000000000\n+chr1\t4667000\t4668000\tSox17\t978.0\t180000\t0.001226993865\t0.000000000000\t2.074675343272\t1.200000000000\n+chr1\t4668000\t4669000\tSox17\t978.0\t181000\t0.001022494888\t0.000000000000\t1.737717018021\t1.000000000000\n+chr1\t4669000\t4670000\tSox17\t978.0\t182000\t0.000408997955\t1.000000000000\t0.732457065928\t0.400000000000\n+chr1\t4670000\t4671000\tSox17\t978.0\t183000\t0.000613496933\t1.000000000000\t1.064351673689\t0.600000000000\n+chr1\t4671000\t4672000\tSox17\t978.0\t184000\t0.000817995910\t1.000000000000\t1.329141603840\t0.800000000000\n+chr1\t4672000\t4673000\tSox17\t978.0\t185000\t0.000817995910\t1.000000000000\t1.309971292093\t0.800000000000\n+chr1\t4673000\t4674000\tSox17\t978.0\t186000\t0.000817995910\t1.000000000000\t1.449329938854\t0.800000000000\n+chr1\t4674000\t4675000\tSox17\t978.0\t187000\t0.001226993865\t0.000000000000\t2.209248880021\t1.200000000000\n+chr1\t4675000\t4676000\tSox17\t978.0\t188000\t0.001022494888\t0.000000000000\t1.821350457987\t1.000000000000\n+chr1\t4676000\t4677000\tSox17\t978.0\t189000\t0.000817995910\t1.000000000000\t1.584151329559\t0.800000000000\n+chr1\t4677000\t4678000\tSox17\t978.0\t190000\t0.001022494888\t0.000000000000\t1.991769215618\t1.000000000000\n+chr1\t4678000\t4679000\tSox17\t978.0\t191000\t0.001226993865\t0.000000000000\t2.270616904920\t1.200000000000\n+chr1\t4679000\t4680000\tSox17\t978.0\t192000\t0.000817995910\t1.000000000000\t1.497110047078\t0.800000000000\n+chr1\t4680000\t4681000\tSox17\t978.0\t193000\t0.001022494888\t0.000000000000\t2.027336523322\t1.000000000000\n+chr1\t4681000\t4682000\tSox17\t978.0\t194000\t0.000817995910\t1.000000000000\t1.574994385387\t0.800000000000\n+chr1\t4682000\t4683000\tSox17\t978.0\t195000\t0.000613496933\t1.000000000000\t1.253714856445\t0.600000000000\n+chr1\t4683000\t4684000\tSox17\t978.0\t196000\t0.000204498978\t1.000000000000\t0.417904952148\t0.200000000000\n+chr1\t4684000\t4685000\tSox17\t978.0\t197000\t0.001022494888\t0.000000000000\t1.935184862473\t1.000000000000\n+chr1\t4685000\t4686000\tSox17\t978.0\t198000\t0.000817995910\t1.000000000000\t1.335657003912\t0.800000000000\n+chr1\t4686000\t4687000\tSox17\t978.0\t199000\t0.001022494888\t0.000000000000\t1.783206992633\t1.000000000000\n+chr1\t4687000\t4688000\tSox17\t978.0\t200000\t0.001363326517\t0.000000000000\t2.316956024029\t1.333333333333\n'

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed
--- a/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed Wed Feb 05 19:52:52 2020 -0500

b"@@ -1,405 +1,405 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n # FL-E13-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 673.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n-chr1\t14100000\t14101000\tEya1\t673.0\t-200000\t0.000000000000\t0.880044890460\t0.000000000000\t0.000000000000\n-chr1\t14101000\t14102000\tEya1\t673.0\t-199000\t0.000000000000\t0.852151439574\t0.000000000000\t0.000000000000\n-chr1\t14102000\t14103000\tEya1\t673.0\t-198000\t0.000000000000\t0.820756603944\t0.000000000000\t0.000000000000\n-chr1\t14103000\t14104000\tEya1\t673.0\t-197000\t0.000000000000\t0.814190727178\t0.000000000000\t0.000000000000\n-chr1\t14104000\t14105000\tEya1\t673.0\t-196000\t0.000000000000\t0.827190062074\t0.000000000000\t0.000000000000\n-chr1\t14105000\t14106000\tEya1\t673.0\t-195000\t0.000000000000\t0.836281106114\t0.000000000000\t0.000000000000\n-chr1\t14106000\t14107000\tEya1\t673.0\t-194000\t0.000000000000\t0.849921252675\t0.000000000000\t0.000000000000\n-chr1\t14107000\t14108000\tEya1\t673.0\t-193000\t0.000000000000\t0.861786083744\t0.000000000000\t0.000000000000\n-chr1\t14108000\t14109000\tEya1\t673.0\t-192000\t0.000000000000\t0.859809384515\t0.000000000000\t0.000000000000\n-chr1\t14109000\t14110000\tEya1\t673.0\t-191000\t0.000000000000\t0.853754951451\t0.000000000000\t0.000000000000\n-chr1\t14110000\t14111000\tEya1\t673.0\t-190000\t0.000000000000\t0.873048946174\t0.000000000000\t0.000000000000\n-chr1\t14111000\t14112000\tEya1\t673.0\t-189000\t0.000000000000\t0.867850964512\t0.000000000000\t0.000000000000\n-chr1\t14112000\t14113000\tEya1\t673.0\t-188000\t0.000000000000\t0.860889061003\t0.000000000000\t0.000000000000\n-chr1\t14113000\t14114000\tEya1\t673.0\t-187000\t0.000000000000\t0.863889228734\t0.000000000000\t0.000000000000\n-chr1\t14114000\t14115000\tEya1\t673.0\t-186000\t0.000000000000\t0.853953368554\t0.000000000000\t0.000000000000\n-chr1\t14115000\t14116000\tEya1\t673.0\t-185000\t0.000000000000\t0.849507893763\t0.000000000000\t0.000000000000\n-chr1\t14116000\t14117000\tEya1\t673.0\t-184000\t0.000000000000\t0.846001342365\t0.000000000000\t0.000000000000\n-chr1\t14117000\t14118000\tEya1\t673.0\t-183000\t0.000000000000\t0.875951792135\t0.000000000000\t0.000000000000\n-chr1\t14118000\t14119000\tEya1\t673.0\t-182000\t0.000000000000\t0.882361637509\t0.000000000000\t0.000000000000\n+chr1\t14100000\t14101000\tEya1\t673.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14101000\t14102000\tEya1\t673.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14102000\t14103000\tEya1\t673.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14103000\t14104000\tEya1\t673.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t14104000\t14105000\tEya1\t673.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14105000\t14106000\tEya1\t673.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14106000\t14107000\tEya1\t673.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14107000\t14108000\tEya1\t673.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14108000\t14109000\tEya1\t673.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14109000\t14110000\tEya1\t673.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14110000\t14111000\tEya1\t673.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14111000\t14112000\tEya1\t673.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14112000\t14113000\tEya1\t673.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14113000\t14114000\tEya1\t673.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14114000\t14115000\tEya1\t673.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14115000\t14116000\tEya1\t673.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n"..b'44260\t0.800000000000\n+chr1\t14462000\t14463000\tEya1\t673.0\t162000\t0.001188707281\t0.998003530647\t1.616154290340\t0.800000000000\n+chr1\t14463000\t14464000\tEya1\t673.0\t163000\t0.000594353640\t0.999352809734\t0.821489212945\t0.400000000000\n+chr1\t14464000\t14465000\tEya1\t673.0\t164000\t0.000594353640\t0.999664588125\t0.857051516792\t0.400000000000\n+chr1\t14465000\t14466000\tEya1\t673.0\t165000\t0.000000000000\t0.999918251505\t0.000000000000\t0.000000000000\n+chr1\t14466000\t14467000\tEya1\t673.0\t166000\t0.000000000000\t0.989304103068\t0.000000000000\t0.000000000000\n+chr1\t14467000\t14468000\tEya1\t673.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14468000\t14469000\tEya1\t673.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n+chr1\t14469000\t14470000\tEya1\t673.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n+chr1\t14470000\t14471000\tEya1\t673.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n+chr1\t14471000\t14472000\tEya1\t673.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n+chr1\t14472000\t14473000\tEya1\t673.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n+chr1\t14473000\t14474000\tEya1\t673.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n+chr1\t14474000\t14475000\tEya1\t673.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n+chr1\t14475000\t14476000\tEya1\t673.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14476000\t14477000\tEya1\t673.0\t176000\t0.000297176820\t1.000000000000\t0.421231702882\t0.200000000000\n+chr1\t14477000\t14478000\tEya1\t673.0\t177000\t0.000297176820\t1.000000000000\t0.449952046478\t0.200000000000\n+chr1\t14478000\t14479000\tEya1\t673.0\t178000\t0.000594353640\t1.000000000000\t0.933862738240\t0.400000000000\n+chr1\t14479000\t14480000\tEya1\t673.0\t179000\t0.000594353640\t1.000000000000\t0.951821637197\t0.400000000000\n+chr1\t14480000\t14481000\tEya1\t673.0\t180000\t0.001485884101\t0.000000000000\t2.512422592521\t1.000000000000\n+chr1\t14481000\t14482000\tEya1\t673.0\t181000\t0.001188707281\t1.000000000000\t2.020192860178\t0.800000000000\n+chr1\t14482000\t14483000\tEya1\t673.0\t182000\t0.001188707281\t1.000000000000\t2.128805380321\t0.800000000000\n+chr1\t14483000\t14484000\tEya1\t673.0\t183000\t0.001783060921\t0.000000000000\t3.093420317586\t1.200000000000\n+chr1\t14484000\t14485000\tEya1\t673.0\t184000\t0.002080237741\t0.000000000000\t3.380127570538\t1.400000000000\n+chr1\t14485000\t14486000\tEya1\t673.0\t185000\t0.001188707281\t1.000000000000\t1.903643274393\t0.800000000000\n+chr1\t14486000\t14487000\tEya1\t673.0\t186000\t0.001188707281\t1.000000000000\t2.106158514412\t0.800000000000\n+chr1\t14487000\t14488000\tEya1\t673.0\t187000\t0.001188707281\t1.000000000000\t2.140312436513\t0.800000000000\n+chr1\t14488000\t14489000\tEya1\t673.0\t188000\t0.000594353640\t1.000000000000\t1.058710697124\t0.400000000000\n+chr1\t14489000\t14490000\tEya1\t673.0\t189000\t0.000297176820\t1.000000000000\t0.575520059550\t0.200000000000\n+chr1\t14490000\t14491000\tEya1\t673.0\t190000\t0.000297176820\t1.000000000000\t0.578885673960\t0.200000000000\n+chr1\t14491000\t14492000\tEya1\t673.0\t191000\t0.002080237741\t0.000000000000\t3.849589730333\t1.400000000000\n+chr1\t14492000\t14493000\tEya1\t673.0\t192000\t0.003268945022\t0.000000000000\t5.982878858272\t2.200000000000\n+chr1\t14493000\t14494000\tEya1\t673.0\t193000\t0.002971768202\t0.000000000000\t5.892229182196\t2.000000000000\n+chr1\t14494000\t14495000\tEya1\t673.0\t194000\t0.003268945022\t0.000000000000\t6.294126893758\t2.200000000000\n+chr1\t14495000\t14496000\tEya1\t673.0\t195000\t0.003268945022\t0.000000000000\t6.680269651133\t2.200000000000\n+chr1\t14496000\t14497000\tEya1\t673.0\t196000\t0.002971768202\t0.000000000000\t6.072972410121\t2.000000000000\n+chr1\t14497000\t14498000\tEya1\t673.0\t197000\t0.002080237741\t0.000000000000\t3.937080406684\t1.400000000000\n+chr1\t14498000\t14499000\tEya1\t673.0\t198000\t0.002971768202\t0.000000000000\t4.852424033528\t2.000000000000\n+chr1\t14499000\t14500000\tEya1\t673.0\t199000\t0.003343239227\t0.000000000000\t5.830530441735\t2.250000000000\n+chr1\t14500000\t14501000\tEya1\t673.0\t200000\t0.004457652303\t0.000000000000\t7.575723225668\t3.000000000000\n'

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- a/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed Wed Feb 05 19:52:52 2020 -0500

b"@@ -1,405 +1,405 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n # FL-E13-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 472.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n-chr1\t18893000\t18894000\tTfap2d\t472.0\t-200000\t0.001412429379\t0.880044890460\t8.554173074049\t0.666666666667\n-chr1\t18894000\t18895000\tTfap2d\t472.0\t-199000\t0.001059322034\t0.852151439574\t5.040852007510\t0.500000000000\n-chr1\t18895000\t18896000\tTfap2d\t472.0\t-198000\t0.000847457627\t0.820756603944\t3.282415254892\t0.400000000000\n-chr1\t18896000\t18897000\tTfap2d\t472.0\t-197000\t0.000847457627\t0.814190727178\t3.136530131373\t0.400000000000\n-chr1\t18897000\t18898000\tTfap2d\t472.0\t-196000\t0.000000000000\t0.827190062074\t0.000000000000\t0.000000000000\n-chr1\t18898000\t18899000\tTfap2d\t472.0\t-195000\t0.000000000000\t0.836281106114\t0.000000000000\t0.000000000000\n-chr1\t18899000\t18900000\tTfap2d\t472.0\t-194000\t0.000000000000\t0.849921252675\t0.000000000000\t0.000000000000\n-chr1\t18900000\t18901000\tTfap2d\t472.0\t-193000\t0.000000000000\t0.861786083744\t0.000000000000\t0.000000000000\n-chr1\t18901000\t18902000\tTfap2d\t472.0\t-192000\t0.000000000000\t0.859809384515\t0.000000000000\t0.000000000000\n-chr1\t18902000\t18903000\tTfap2d\t472.0\t-191000\t0.000000000000\t0.853754951451\t0.000000000000\t0.000000000000\n-chr1\t18903000\t18904000\tTfap2d\t472.0\t-190000\t0.000000000000\t0.873048946174\t0.000000000000\t0.000000000000\n-chr1\t18904000\t18905000\tTfap2d\t472.0\t-189000\t0.000000000000\t0.867850964512\t0.000000000000\t0.000000000000\n-chr1\t18905000\t18906000\tTfap2d\t472.0\t-188000\t0.000000000000\t0.860889061003\t0.000000000000\t0.000000000000\n-chr1\t18906000\t18907000\tTfap2d\t472.0\t-187000\t0.000000000000\t0.863889228734\t0.000000000000\t0.000000000000\n-chr1\t18907000\t18908000\tTfap2d\t472.0\t-186000\t0.000000000000\t0.853953368554\t0.000000000000\t0.000000000000\n-chr1\t18908000\t18909000\tTfap2d\t472.0\t-185000\t0.000000000000\t0.849507893763\t0.000000000000\t0.000000000000\n-chr1\t18909000\t18910000\tTfap2d\t472.0\t-184000\t0.000000000000\t0.846001342365\t0.000000000000\t0.000000000000\n-chr1\t18910000\t18911000\tTfap2d\t472.0\t-183000\t0.000000000000\t0.875951792135\t0.000000000000\t0.000000000000\n-chr1\t18911000\t18912000\tTfap2d\t472.0\t-182000\t0.000000000000\t0.882361637509\t0.000000000000\t0.000000000000\n+chr1\t18893000\t18894000\tTfap2d\t472.0\t-200000\t0.001412429379\t1.000000000000\t8.554173074049\t0.666666666667\n+chr1\t18894000\t18895000\tTfap2d\t472.0\t-199000\t0.001059322034\t1.000000000000\t5.040852007510\t0.500000000000\n+chr1\t18895000\t18896000\tTfap2d\t472.0\t-198000\t0.000847457627\t1.000000000000\t3.282415254892\t0.400000000000\n+chr1\t18896000\t18897000\tTfap2d\t472.0\t-197000\t0.000847457627\t0.999999994943\t3.136530131373\t0.400000000000\n+chr1\t18897000\t18898000\tTfap2d\t472.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18898000\t18899000\tTfap2d\t472.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18899000\t18900000\tTfap2d\t472.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18900000\t18901000\tTfap2d\t472.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18901000\t18902000\tTfap2d\t472.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18902000\t18903000\tTfap2d\t472.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18903000\t18904000\tTfap2d\t472.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18904000\t18905000\tTfap2d\t472.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18905000\t18906000\tTfap2d\t472.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18906000\t18907000\tTfap2d\t472.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18907000\t18908000\tTfap2d\t472.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18908000\t18909000\tTfap2d\t47"..b'4\t0.998003530647\t2.304389486014\t0.800000000000\n+chr1\t19256000\t19257000\tTfap2d\t472.0\t163000\t0.002542372881\t0.000647190266\t3.513954917238\t1.200000000000\n+chr1\t19257000\t19258000\tTfap2d\t472.0\t164000\t0.002118644068\t0.000335411875\t3.055061815685\t1.000000000000\n+chr1\t19258000\t19259000\tTfap2d\t472.0\t165000\t0.002118644068\t0.000081748495\t3.252162579500\t1.000000000000\n+chr1\t19259000\t19260000\tTfap2d\t472.0\t166000\t0.001694915254\t0.989304103068\t2.822877120847\t0.800000000000\n+chr1\t19260000\t19261000\tTfap2d\t472.0\t167000\t0.001694915254\t1.000000000000\t2.701317818024\t0.800000000000\n+chr1\t19261000\t19262000\tTfap2d\t472.0\t168000\t0.000847457627\t0.999999999417\t1.312966101957\t0.400000000000\n+chr1\t19262000\t19263000\tTfap2d\t472.0\t169000\t0.000423728814\t0.997208984795\t0.593041411154\t0.200000000000\n+chr1\t19263000\t19264000\tTfap2d\t472.0\t170000\t0.000423728814\t0.999780212263\t0.573755512251\t0.200000000000\n+chr1\t19264000\t19265000\tTfap2d\t472.0\t171000\t0.000000000000\t0.981475867334\t0.000000000000\t0.000000000000\n+chr1\t19265000\t19266000\tTfap2d\t472.0\t172000\t0.000000000000\t0.944032684304\t0.000000000000\t0.000000000000\n+chr1\t19266000\t19267000\tTfap2d\t472.0\t173000\t0.000000000000\t0.999936032663\t0.000000000000\t0.000000000000\n+chr1\t19267000\t19268000\tTfap2d\t472.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n+chr1\t19268000\t19269000\tTfap2d\t472.0\t175000\t0.000423728814\t1.000000000000\t0.608378689139\t0.200000000000\n+chr1\t19269000\t19270000\tTfap2d\t472.0\t176000\t0.000423728814\t1.000000000000\t0.600612152627\t0.200000000000\n+chr1\t19270000\t19271000\tTfap2d\t472.0\t177000\t0.000423728814\t1.000000000000\t0.641562981525\t0.200000000000\n+chr1\t19271000\t19272000\tTfap2d\t472.0\t178000\t0.000423728814\t1.000000000000\t0.665772905546\t0.200000000000\n+chr1\t19272000\t19273000\tTfap2d\t472.0\t179000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n+chr1\t19273000\t19274000\tTfap2d\t472.0\t180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19274000\t19275000\tTfap2d\t472.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19275000\t19276000\tTfap2d\t472.0\t182000\t0.000423728814\t1.000000000000\t0.758837934828\t0.200000000000\n+chr1\t19276000\t19277000\tTfap2d\t472.0\t183000\t0.000423728814\t1.000000000000\t0.735124249200\t0.200000000000\n+chr1\t19277000\t19278000\tTfap2d\t472.0\t184000\t0.000423728814\t1.000000000000\t0.688506614701\t0.200000000000\n+chr1\t19278000\t19279000\tTfap2d\t472.0\t185000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n+chr1\t19279000\t19280000\tTfap2d\t472.0\t186000\t0.000423728814\t1.000000000000\t0.750765190784\t0.200000000000\n+chr1\t19280000\t19281000\tTfap2d\t472.0\t187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19281000\t19282000\tTfap2d\t472.0\t188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19282000\t19283000\tTfap2d\t472.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19283000\t19284000\tTfap2d\t472.0\t190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19284000\t19285000\tTfap2d\t472.0\t191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19285000\t19286000\tTfap2d\t472.0\t192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19286000\t19287000\tTfap2d\t472.0\t193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19287000\t19288000\tTfap2d\t472.0\t194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19288000\t19289000\tTfap2d\t472.0\t195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19289000\t19290000\tTfap2d\t472.0\t196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19290000\t19291000\tTfap2d\t472.0\t197000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19291000\t19292000\tTfap2d\t472.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19292000\t19293000\tTfap2d\t472.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19293000\t19294000\tTfap2d\t472.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n'

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed
--- a/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed Wed Feb 05 19:52:52 2020 -0500

b"@@ -1,405 +1,405 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n # FL-E13-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 810.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n-chr1\t4287000\t4288000\tSox17\t810.0\t-200000\t0.000000000000\t0.880044890460\t0.000000000000\t0.000000000000\n-chr1\t4288000\t4289000\tSox17\t810.0\t-199000\t0.000000000000\t0.852151439574\t0.000000000000\t0.000000000000\n-chr1\t4289000\t4290000\tSox17\t810.0\t-198000\t0.000000000000\t0.820756603944\t0.000000000000\t0.000000000000\n-chr1\t4290000\t4291000\tSox17\t810.0\t-197000\t0.000000000000\t0.814190727178\t0.000000000000\t0.000000000000\n-chr1\t4291000\t4292000\tSox17\t810.0\t-196000\t0.000000000000\t0.827190062074\t0.000000000000\t0.000000000000\n-chr1\t4292000\t4293000\tSox17\t810.0\t-195000\t0.000000000000\t0.836281106114\t0.000000000000\t0.000000000000\n-chr1\t4293000\t4294000\tSox17\t810.0\t-194000\t0.000000000000\t0.849921252675\t0.000000000000\t0.000000000000\n-chr1\t4294000\t4295000\tSox17\t810.0\t-193000\t0.000000000000\t0.861786083744\t0.000000000000\t0.000000000000\n-chr1\t4295000\t4296000\tSox17\t810.0\t-192000\t0.000000000000\t0.859809384515\t0.000000000000\t0.000000000000\n-chr1\t4296000\t4297000\tSox17\t810.0\t-191000\t0.000000000000\t0.853754951451\t0.000000000000\t0.000000000000\n-chr1\t4297000\t4298000\tSox17\t810.0\t-190000\t0.000000000000\t0.873048946174\t0.000000000000\t0.000000000000\n-chr1\t4298000\t4299000\tSox17\t810.0\t-189000\t0.000000000000\t0.867850964512\t0.000000000000\t0.000000000000\n-chr1\t4299000\t4300000\tSox17\t810.0\t-188000\t0.000000000000\t0.860889061003\t0.000000000000\t0.000000000000\n-chr1\t4300000\t4301000\tSox17\t810.0\t-187000\t0.000000000000\t0.863889228734\t0.000000000000\t0.000000000000\n-chr1\t4301000\t4302000\tSox17\t810.0\t-186000\t0.000000000000\t0.853953368554\t0.000000000000\t0.000000000000\n-chr1\t4302000\t4303000\tSox17\t810.0\t-185000\t0.000000000000\t0.849507893763\t0.000000000000\t0.000000000000\n-chr1\t4303000\t4304000\tSox17\t810.0\t-184000\t0.000000000000\t0.846001342365\t0.000000000000\t0.000000000000\n-chr1\t4304000\t4305000\tSox17\t810.0\t-183000\t0.000000000000\t0.875951792135\t0.000000000000\t0.000000000000\n-chr1\t4305000\t4306000\tSox17\t810.0\t-182000\t0.000000000000\t0.882361637509\t0.000000000000\t0.000000000000\n+chr1\t4287000\t4288000\tSox17\t810.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4288000\t4289000\tSox17\t810.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4289000\t4290000\tSox17\t810.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4290000\t4291000\tSox17\t810.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t4291000\t4292000\tSox17\t810.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4292000\t4293000\tSox17\t810.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4293000\t4294000\tSox17\t810.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4294000\t4295000\tSox17\t810.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4295000\t4296000\tSox17\t810.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4296000\t4297000\tSox17\t810.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4297000\t4298000\tSox17\t810.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4298000\t4299000\tSox17\t810.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4299000\t4300000\tSox17\t810.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4300000\t4301000\tSox17\t810.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4301000\t4302000\tSox17\t810.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4302000\t4303000\tSox17\t810.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4303000\t4304000\tSox17\t810.0\t-184"..b'0.000493827160\t1.000000000000\t0.593839639683\t0.400000000000\n+chr1\t4649000\t4650000\tSox17\t810.0\t162000\t0.000493827160\t0.998003530647\t0.671402368765\t0.400000000000\n+chr1\t4650000\t4651000\tSox17\t810.0\t163000\t0.000493827160\t0.999352809734\t0.682545975694\t0.400000000000\n+chr1\t4651000\t4652000\tSox17\t810.0\t164000\t0.000493827160\t0.999664588125\t0.712093420742\t0.400000000000\n+chr1\t4652000\t4653000\tSox17\t810.0\t165000\t0.000987654321\t0.999918251505\t1.516069864221\t0.800000000000\n+chr1\t4653000\t4654000\tSox17\t810.0\t166000\t0.000987654321\t0.989304103068\t1.644935803753\t0.800000000000\n+chr1\t4654000\t4655000\tSox17\t810.0\t167000\t0.000987654321\t1.000000000000\t1.574101247046\t0.800000000000\n+chr1\t4655000\t4656000\tSox17\t810.0\t168000\t0.001481481481\t0.000000000583\t2.295259259717\t1.200000000000\n+chr1\t4656000\t4657000\tSox17\t810.0\t169000\t0.001728395062\t0.002791015205\t2.419023237597\t1.400000000000\n+chr1\t4657000\t4658000\tSox17\t810.0\t170000\t0.001234567901\t0.000219787737\t1.671682727052\t1.000000000000\n+chr1\t4658000\t4659000\tSox17\t810.0\t171000\t0.000987654321\t0.981475867334\t1.353856628464\t0.800000000000\n+chr1\t4659000\t4660000\tSox17\t810.0\t172000\t0.000987654321\t0.944032684304\t1.270220697103\t0.800000000000\n+chr1\t4660000\t4661000\tSox17\t810.0\t173000\t0.000493827160\t0.999936032663\t0.647612520865\t0.400000000000\n+chr1\t4661000\t4662000\tSox17\t810.0\t174000\t0.000246913580\t0.999594131731\t0.342694958640\t0.200000000000\n+chr1\t4662000\t4663000\tSox17\t810.0\t175000\t0.000246913580\t1.000000000000\t0.354512026264\t0.200000000000\n+chr1\t4663000\t4664000\tSox17\t810.0\t176000\t0.000246913580\t1.000000000000\t0.349986340790\t0.200000000000\n+chr1\t4664000\t4665000\tSox17\t810.0\t177000\t0.000246913580\t1.000000000000\t0.373849046024\t0.200000000000\n+chr1\t4665000\t4666000\tSox17\t810.0\t178000\t0.000493827160\t1.000000000000\t0.775913114612\t0.400000000000\n+chr1\t4666000\t4667000\tSox17\t810.0\t179000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n+chr1\t4667000\t4668000\tSox17\t810.0\t180000\t0.000246913580\t1.000000000000\t0.417496396239\t0.200000000000\n+chr1\t4668000\t4669000\tSox17\t810.0\t181000\t0.000246913580\t1.000000000000\t0.419626479907\t0.200000000000\n+chr1\t4669000\t4670000\tSox17\t810.0\t182000\t0.000246913580\t1.000000000000\t0.442187043505\t0.200000000000\n+chr1\t4670000\t4671000\tSox17\t810.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4671000\t4672000\tSox17\t810.0\t184000\t0.000246913580\t1.000000000000\t0.401203854492\t0.200000000000\n+chr1\t4672000\t4673000\tSox17\t810.0\t185000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n+chr1\t4673000\t4674000\tSox17\t810.0\t186000\t0.000246913580\t1.000000000000\t0.437482925987\t0.200000000000\n+chr1\t4674000\t4675000\tSox17\t810.0\t187000\t0.000246913580\t1.000000000000\t0.444577243757\t0.200000000000\n+chr1\t4675000\t4676000\tSox17\t810.0\t188000\t0.000493827160\t1.000000000000\t0.879644813784\t0.400000000000\n+chr1\t4676000\t4677000\tSox17\t810.0\t189000\t0.000246913580\t1.000000000000\t0.478179012441\t0.200000000000\n+chr1\t4677000\t4678000\tSox17\t810.0\t190000\t0.000246913580\t1.000000000000\t0.480975380957\t0.200000000000\n+chr1\t4678000\t4679000\tSox17\t810.0\t191000\t0.000740740741\t1.000000000000\t1.370779835192\t0.600000000000\n+chr1\t4679000\t4680000\tSox17\t810.0\t192000\t0.000740740741\t1.000000000000\t1.355716320410\t0.600000000000\n+chr1\t4680000\t4681000\tSox17\t810.0\t193000\t0.000740740741\t1.000000000000\t1.468692681340\t0.600000000000\n+chr1\t4681000\t4682000\tSox17\t810.0\t194000\t0.000740740741\t1.000000000000\t1.426244915656\t0.600000000000\n+chr1\t4682000\t4683000\tSox17\t810.0\t195000\t0.000740740741\t1.000000000000\t1.513744604449\t0.600000000000\n+chr1\t4683000\t4684000\tSox17\t810.0\t196000\t0.000493827160\t1.000000000000\t1.009163069632\t0.400000000000\n+chr1\t4684000\t4685000\tSox17\t810.0\t197000\t0.000493827160\t1.000000000000\t0.934622615061\t0.400000000000\n+chr1\t4685000\t4686000\tSox17\t810.0\t198000\t0.000246913580\t1.000000000000\t0.403170540070\t0.200000000000\n+chr1\t4686000\t4687000\tSox17\t810.0\t199000\t0.000308641975\t1.000000000000\t0.538264332961\t0.250000000000\n+chr1\t4687000\t4688000\tSox17\t810.0\t200000\t0.000411522634\t1.000000000000\t0.699377466512\t0.333333333333\n'

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed
--- a/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed Wed Feb 05 19:52:52 2020 -0500

b"@@ -1,405 +1,405 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n # MB-E10-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 832.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n-chr1\t14100000\t14101000\tEya1\t832.0\t-200000\t0.000400641026\t0.880044890460\t2.426424093120\t0.333333333333\n-chr1\t14101000\t14102000\tEya1\t832.0\t-199000\t0.000300480769\t0.852151439574\t1.429857059822\t0.250000000000\n-chr1\t14102000\t14103000\tEya1\t832.0\t-198000\t0.000240384615\t0.820756603944\t0.931069711724\t0.200000000000\n-chr1\t14103000\t14104000\tEya1\t832.0\t-197000\t0.000240384615\t0.814190727178\t0.889688835341\t0.200000000000\n-chr1\t14104000\t14105000\tEya1\t832.0\t-196000\t0.000240384615\t0.827190062074\t0.976487746811\t0.200000000000\n-chr1\t14105000\t14106000\tEya1\t832.0\t-195000\t0.000000000000\t0.836281106114\t0.000000000000\t0.000000000000\n-chr1\t14106000\t14107000\tEya1\t832.0\t-194000\t0.000000000000\t0.849921252675\t0.000000000000\t0.000000000000\n-chr1\t14107000\t14108000\tEya1\t832.0\t-193000\t0.000000000000\t0.861786083744\t0.000000000000\t0.000000000000\n-chr1\t14108000\t14109000\tEya1\t832.0\t-192000\t0.000000000000\t0.859809384515\t0.000000000000\t0.000000000000\n-chr1\t14109000\t14110000\tEya1\t832.0\t-191000\t0.000000000000\t0.853754951451\t0.000000000000\t0.000000000000\n-chr1\t14110000\t14111000\tEya1\t832.0\t-190000\t0.000000000000\t0.873048946174\t0.000000000000\t0.000000000000\n-chr1\t14111000\t14112000\tEya1\t832.0\t-189000\t0.000000000000\t0.867850964512\t0.000000000000\t0.000000000000\n-chr1\t14112000\t14113000\tEya1\t832.0\t-188000\t0.000000000000\t0.860889061003\t0.000000000000\t0.000000000000\n-chr1\t14113000\t14114000\tEya1\t832.0\t-187000\t0.000000000000\t0.863889228734\t0.000000000000\t0.000000000000\n-chr1\t14114000\t14115000\tEya1\t832.0\t-186000\t0.000000000000\t0.853953368554\t0.000000000000\t0.000000000000\n-chr1\t14115000\t14116000\tEya1\t832.0\t-185000\t0.000000000000\t0.849507893763\t0.000000000000\t0.000000000000\n-chr1\t14116000\t14117000\tEya1\t832.0\t-184000\t0.000000000000\t0.846001342365\t0.000000000000\t0.000000000000\n-chr1\t14117000\t14118000\tEya1\t832.0\t-183000\t0.000000000000\t0.875951792135\t0.000000000000\t0.000000000000\n-chr1\t14118000\t14119000\tEya1\t832.0\t-182000\t0.000000000000\t0.882361637509\t0.000000000000\t0.000000000000\n+chr1\t14100000\t14101000\tEya1\t832.0\t-200000\t0.000400641026\t1.000000000000\t2.426424093120\t0.333333333333\n+chr1\t14101000\t14102000\tEya1\t832.0\t-199000\t0.000300480769\t1.000000000000\t1.429857059822\t0.250000000000\n+chr1\t14102000\t14103000\tEya1\t832.0\t-198000\t0.000240384615\t1.000000000000\t0.931069711724\t0.200000000000\n+chr1\t14103000\t14104000\tEya1\t832.0\t-197000\t0.000240384615\t0.999999994943\t0.889688835341\t0.200000000000\n+chr1\t14104000\t14105000\tEya1\t832.0\t-196000\t0.000240384615\t1.000000000000\t0.976487746811\t0.200000000000\n+chr1\t14105000\t14106000\tEya1\t832.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14106000\t14107000\tEya1\t832.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14107000\t14108000\tEya1\t832.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14108000\t14109000\tEya1\t832.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14109000\t14110000\tEya1\t832.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14110000\t14111000\tEya1\t832.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14111000\t14112000\tEya1\t832.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14112000\t14113000\tEya1\t832.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14113000\t14114000\tEya1\t832.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14114000\t14115000\tEya1\t832.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14115000\t14116000\tEya1\t832.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n"..b'96844\t1.600000000000\n+chr1\t14462000\t14463000\tEya1\t832.0\t162000\t0.002163461538\t0.001996469353\t2.941420233350\t1.800000000000\n+chr1\t14463000\t14464000\tEya1\t832.0\t163000\t0.001682692308\t0.000647190266\t2.325742597467\t1.400000000000\n+chr1\t14464000\t14465000\tEya1\t832.0\t164000\t0.001682692308\t0.000335411875\t2.426424095919\t1.400000000000\n+chr1\t14465000\t14466000\tEya1\t832.0\t165000\t0.000721153846\t0.999918251505\t1.106986108791\t0.600000000000\n+chr1\t14466000\t14467000\tEya1\t832.0\t166000\t0.000240384615\t0.989304103068\t0.400359976274\t0.200000000000\n+chr1\t14467000\t14468000\tEya1\t832.0\t167000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14468000\t14469000\tEya1\t832.0\t168000\t0.000000000000\t0.999999999417\t0.000000000000\t0.000000000000\n+chr1\t14469000\t14470000\tEya1\t832.0\t169000\t0.000000000000\t0.997208984795\t0.000000000000\t0.000000000000\n+chr1\t14470000\t14471000\tEya1\t832.0\t170000\t0.000000000000\t0.999780212263\t0.000000000000\t0.000000000000\n+chr1\t14471000\t14472000\tEya1\t832.0\t171000\t0.000480769231\t0.981475867334\t0.659028767461\t0.400000000000\n+chr1\t14472000\t14473000\tEya1\t832.0\t172000\t0.000480769231\t0.944032684304\t0.618316565296\t0.400000000000\n+chr1\t14473000\t14474000\tEya1\t832.0\t173000\t0.000480769231\t0.999936032663\t0.630488151323\t0.400000000000\n+chr1\t14474000\t14475000\tEya1\t832.0\t174000\t0.000480769231\t0.999594131731\t0.667266626197\t0.400000000000\n+chr1\t14475000\t14476000\tEya1\t832.0\t175000\t0.000480769231\t1.000000000000\t0.690275820369\t0.400000000000\n+chr1\t14476000\t14477000\tEya1\t832.0\t176000\t0.000240384615\t1.000000000000\t0.340731894279\t0.200000000000\n+chr1\t14477000\t14478000\tEya1\t832.0\t177000\t0.000480769231\t1.000000000000\t0.727927229038\t0.400000000000\n+chr1\t14478000\t14479000\tEya1\t832.0\t178000\t0.000480769231\t1.000000000000\t0.755396181293\t0.400000000000\n+chr1\t14479000\t14480000\tEya1\t832.0\t179000\t0.000480769231\t1.000000000000\t0.769923031050\t0.400000000000\n+chr1\t14480000\t14481000\tEya1\t832.0\t180000\t0.000480769231\t1.000000000000\t0.812913656138\t0.400000000000\n+chr1\t14481000\t14482000\tEya1\t832.0\t181000\t0.000240384615\t1.000000000000\t0.408530587410\t0.200000000000\n+chr1\t14482000\t14483000\tEya1\t832.0\t182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14483000\t14484000\tEya1\t832.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14484000\t14485000\tEya1\t832.0\t184000\t0.000240384615\t1.000000000000\t0.390595098725\t0.200000000000\n+chr1\t14485000\t14486000\tEya1\t832.0\t185000\t0.000961538462\t1.000000000000\t1.539846062099\t0.800000000000\n+chr1\t14486000\t14487000\tEya1\t832.0\t186000\t0.000961538462\t1.000000000000\t1.703659471393\t0.800000000000\n+chr1\t14487000\t14488000\tEya1\t832.0\t187000\t0.000961538462\t1.000000000000\t1.731286381939\t0.800000000000\n+chr1\t14488000\t14489000\tEya1\t832.0\t188000\t0.001201923077\t0.000000000000\t2.140962437394\t1.000000000000\n+chr1\t14489000\t14490000\tEya1\t832.0\t189000\t0.001442307692\t0.000000000000\t2.793209135173\t1.200000000000\n+chr1\t14490000\t14491000\tEya1\t832.0\t190000\t0.000721153846\t1.000000000000\t1.404771845823\t0.600000000000\n+chr1\t14491000\t14492000\tEya1\t832.0\t191000\t0.001442307692\t0.000000000000\t2.669066506024\t1.200000000000\n+chr1\t14492000\t14493000\tEya1\t832.0\t192000\t0.002403846154\t0.000000000000\t4.399560174407\t2.000000000000\n+chr1\t14493000\t14494000\tEya1\t832.0\t193000\t0.002163461538\t0.000000000000\t4.289571172663\t1.800000000000\n+chr1\t14494000\t14495000\tEya1\t832.0\t194000\t0.001682692308\t0.000000000000\t3.239907320421\t1.400000000000\n+chr1\t14495000\t14496000\tEya1\t832.0\t195000\t0.002163461538\t0.000000000000\t4.421153111551\t1.800000000000\n+chr1\t14496000\t14497000\tEya1\t832.0\t196000\t0.001682692308\t0.000000000000\t3.438674642317\t1.400000000000\n+chr1\t14497000\t14498000\tEya1\t832.0\t197000\t0.001442307692\t0.000000000000\t2.729727108893\t1.200000000000\n+chr1\t14498000\t14499000\tEya1\t832.0\t198000\t0.002644230769\t0.000000000000\t4.317607586564\t2.200000000000\n+chr1\t14499000\t14500000\tEya1\t832.0\t199000\t0.003305288462\t0.000000000000\t5.764345200343\t2.750000000000\n+chr1\t14500000\t14501000\tEya1\t832.0\t200000\t0.003605769231\t0.000000000000\t6.127958811148\t3.000000000000\n'

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- a/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed Wed Feb 05 19:52:52 2020 -0500

b"@@ -1,405 +1,405 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n # MB-E10-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 800.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n-chr1\t18893000\t18894000\tTfap2d\t800.0\t-200000\t0.000000000000\t0.880044890460\t0.000000000000\t0.000000000000\n-chr1\t18894000\t18895000\tTfap2d\t800.0\t-199000\t0.000000000000\t0.852151439574\t0.000000000000\t0.000000000000\n-chr1\t18895000\t18896000\tTfap2d\t800.0\t-198000\t0.000000000000\t0.820756603944\t0.000000000000\t0.000000000000\n-chr1\t18896000\t18897000\tTfap2d\t800.0\t-197000\t0.000000000000\t0.814190727178\t0.000000000000\t0.000000000000\n-chr1\t18897000\t18898000\tTfap2d\t800.0\t-196000\t0.000000000000\t0.827190062074\t0.000000000000\t0.000000000000\n-chr1\t18898000\t18899000\tTfap2d\t800.0\t-195000\t0.000000000000\t0.836281106114\t0.000000000000\t0.000000000000\n-chr1\t18899000\t18900000\tTfap2d\t800.0\t-194000\t0.000000000000\t0.849921252675\t0.000000000000\t0.000000000000\n-chr1\t18900000\t18901000\tTfap2d\t800.0\t-193000\t0.000000000000\t0.861786083744\t0.000000000000\t0.000000000000\n-chr1\t18901000\t18902000\tTfap2d\t800.0\t-192000\t0.000000000000\t0.859809384515\t0.000000000000\t0.000000000000\n-chr1\t18902000\t18903000\tTfap2d\t800.0\t-191000\t0.000000000000\t0.853754951451\t0.000000000000\t0.000000000000\n-chr1\t18903000\t18904000\tTfap2d\t800.0\t-190000\t0.000000000000\t0.873048946174\t0.000000000000\t0.000000000000\n-chr1\t18904000\t18905000\tTfap2d\t800.0\t-189000\t0.000000000000\t0.867850964512\t0.000000000000\t0.000000000000\n-chr1\t18905000\t18906000\tTfap2d\t800.0\t-188000\t0.000000000000\t0.860889061003\t0.000000000000\t0.000000000000\n-chr1\t18906000\t18907000\tTfap2d\t800.0\t-187000\t0.000000000000\t0.863889228734\t0.000000000000\t0.000000000000\n-chr1\t18907000\t18908000\tTfap2d\t800.0\t-186000\t0.000000000000\t0.853953368554\t0.000000000000\t0.000000000000\n-chr1\t18908000\t18909000\tTfap2d\t800.0\t-185000\t0.000000000000\t0.849507893763\t0.000000000000\t0.000000000000\n-chr1\t18909000\t18910000\tTfap2d\t800.0\t-184000\t0.000000000000\t0.846001342365\t0.000000000000\t0.000000000000\n-chr1\t18910000\t18911000\tTfap2d\t800.0\t-183000\t0.000000000000\t0.875951792135\t0.000000000000\t0.000000000000\n-chr1\t18911000\t18912000\tTfap2d\t800.0\t-182000\t0.000000000000\t0.882361637509\t0.000000000000\t0.000000000000\n+chr1\t18893000\t18894000\tTfap2d\t800.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18894000\t18895000\tTfap2d\t800.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18895000\t18896000\tTfap2d\t800.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18896000\t18897000\tTfap2d\t800.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t18897000\t18898000\tTfap2d\t800.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18898000\t18899000\tTfap2d\t800.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18899000\t18900000\tTfap2d\t800.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18900000\t18901000\tTfap2d\t800.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18901000\t18902000\tTfap2d\t800.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18902000\t18903000\tTfap2d\t800.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18903000\t18904000\tTfap2d\t800.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18904000\t18905000\tTfap2d\t800.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18905000\t18906000\tTfap2d\t800.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18906000\t18907000\tTfap2d\t800.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18907000\t18908000\tTfap2d\t800.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18908000\t18909000\tTfap2d\t80"..b'0\t0.998003530647\t0.000000000000\t0.000000000000\n+chr1\t19256000\t19257000\tTfap2d\t800.0\t163000\t0.000000000000\t0.999352809734\t0.000000000000\t0.000000000000\n+chr1\t19257000\t19258000\tTfap2d\t800.0\t164000\t0.000000000000\t0.999664588125\t0.000000000000\t0.000000000000\n+chr1\t19258000\t19259000\tTfap2d\t800.0\t165000\t0.000250000000\t0.999918251505\t0.383755184381\t0.200000000000\n+chr1\t19259000\t19260000\tTfap2d\t800.0\t166000\t0.000500000000\t0.989304103068\t0.832748750650\t0.400000000000\n+chr1\t19260000\t19261000\tTfap2d\t800.0\t167000\t0.000750000000\t1.000000000000\t1.195333134476\t0.600000000000\n+chr1\t19261000\t19262000\tTfap2d\t800.0\t168000\t0.000750000000\t0.999999999417\t1.161975000232\t0.600000000000\n+chr1\t19262000\t19263000\tTfap2d\t800.0\t169000\t0.001000000000\t0.997208984795\t1.399577730324\t0.800000000000\n+chr1\t19263000\t19264000\tTfap2d\t800.0\t170000\t0.000750000000\t0.999780212263\t1.015547256684\t0.600000000000\n+chr1\t19264000\t19265000\tTfap2d\t800.0\t171000\t0.000750000000\t0.981475867334\t1.028084877240\t0.600000000000\n+chr1\t19265000\t19266000\tTfap2d\t800.0\t172000\t0.000500000000\t0.944032684304\t0.643049227908\t0.400000000000\n+chr1\t19266000\t19267000\tTfap2d\t800.0\t173000\t0.000750000000\t0.999936032663\t0.983561516064\t0.600000000000\n+chr1\t19267000\t19268000\tTfap2d\t800.0\t174000\t0.000500000000\t0.999594131731\t0.693957291245\t0.400000000000\n+chr1\t19268000\t19269000\tTfap2d\t800.0\t175000\t0.000750000000\t1.000000000000\t1.076830279776\t0.600000000000\n+chr1\t19269000\t19270000\tTfap2d\t800.0\t176000\t0.000750000000\t1.000000000000\t1.063083510150\t0.600000000000\n+chr1\t19270000\t19271000\tTfap2d\t800.0\t177000\t0.000750000000\t1.000000000000\t1.135566477299\t0.600000000000\n+chr1\t19271000\t19272000\tTfap2d\t800.0\t178000\t0.000500000000\t1.000000000000\t0.785612028545\t0.400000000000\n+chr1\t19272000\t19273000\tTfap2d\t800.0\t179000\t0.000500000000\t1.000000000000\t0.800719952292\t0.400000000000\n+chr1\t19273000\t19274000\tTfap2d\t800.0\t180000\t0.000250000000\t1.000000000000\t0.422715101192\t0.200000000000\n+chr1\t19274000\t19275000\tTfap2d\t800.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19275000\t19276000\tTfap2d\t800.0\t182000\t0.000250000000\t1.000000000000\t0.447714381549\t0.200000000000\n+chr1\t19276000\t19277000\tTfap2d\t800.0\t183000\t0.000250000000\t1.000000000000\t0.433723307028\t0.200000000000\n+chr1\t19277000\t19278000\tTfap2d\t800.0\t184000\t0.000750000000\t1.000000000000\t1.218656708021\t0.600000000000\n+chr1\t19278000\t19279000\tTfap2d\t800.0\t185000\t0.000750000000\t1.000000000000\t1.201079928437\t0.600000000000\n+chr1\t19279000\t19280000\tTfap2d\t800.0\t186000\t0.000750000000\t1.000000000000\t1.328854387687\t0.600000000000\n+chr1\t19280000\t19281000\tTfap2d\t800.0\t187000\t0.000500000000\t1.000000000000\t0.900268918608\t0.400000000000\n+chr1\t19281000\t19282000\tTfap2d\t800.0\t188000\t0.000500000000\t1.000000000000\t0.890640373956\t0.400000000000\n+chr1\t19282000\t19283000\tTfap2d\t800.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19283000\t19284000\tTfap2d\t800.0\t190000\t0.000250000000\t1.000000000000\t0.486987573219\t0.200000000000\n+chr1\t19284000\t19285000\tTfap2d\t800.0\t191000\t0.000250000000\t1.000000000000\t0.462638194377\t0.200000000000\n+chr1\t19285000\t19286000\tTfap2d\t800.0\t192000\t0.000250000000\t1.000000000000\t0.457554258138\t0.200000000000\n+chr1\t19286000\t19287000\tTfap2d\t800.0\t193000\t0.000500000000\t1.000000000000\t0.991367559904\t0.400000000000\n+chr1\t19287000\t19288000\tTfap2d\t800.0\t194000\t0.000500000000\t1.000000000000\t0.962715318068\t0.400000000000\n+chr1\t19288000\t19289000\tTfap2d\t800.0\t195000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n+chr1\t19289000\t19290000\tTfap2d\t800.0\t196000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n+chr1\t19290000\t19291000\tTfap2d\t800.0\t197000\t0.000250000000\t1.000000000000\t0.473152698875\t0.200000000000\n+chr1\t19291000\t19292000\tTfap2d\t800.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19292000\t19293000\tTfap2d\t800.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19293000\t19294000\tTfap2d\t800.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n'

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed
--- a/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed Wed Feb 05 19:52:52 2020 -0500

b"@@ -1,405 +1,405 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.3\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n # MB-E10-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 978.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n-chr1\t4287000\t4288000\tSox17\t978.0\t-200000\t0.000000000000\t0.880044890460\t0.000000000000\t0.000000000000\n-chr1\t4288000\t4289000\tSox17\t978.0\t-199000\t0.000000000000\t0.852151439574\t0.000000000000\t0.000000000000\n-chr1\t4289000\t4290000\tSox17\t978.0\t-198000\t0.000000000000\t0.820756603944\t0.000000000000\t0.000000000000\n-chr1\t4290000\t4291000\tSox17\t978.0\t-197000\t0.000000000000\t0.814190727178\t0.000000000000\t0.000000000000\n-chr1\t4291000\t4292000\tSox17\t978.0\t-196000\t0.000000000000\t0.827190062074\t0.000000000000\t0.000000000000\n-chr1\t4292000\t4293000\tSox17\t978.0\t-195000\t0.000000000000\t0.836281106114\t0.000000000000\t0.000000000000\n-chr1\t4293000\t4294000\tSox17\t978.0\t-194000\t0.000000000000\t0.849921252675\t0.000000000000\t0.000000000000\n-chr1\t4294000\t4295000\tSox17\t978.0\t-193000\t0.000000000000\t0.861786083744\t0.000000000000\t0.000000000000\n-chr1\t4295000\t4296000\tSox17\t978.0\t-192000\t0.000000000000\t0.859809384515\t0.000000000000\t0.000000000000\n-chr1\t4296000\t4297000\tSox17\t978.0\t-191000\t0.000000000000\t0.853754951451\t0.000000000000\t0.000000000000\n-chr1\t4297000\t4298000\tSox17\t978.0\t-190000\t0.000000000000\t0.873048946174\t0.000000000000\t0.000000000000\n-chr1\t4298000\t4299000\tSox17\t978.0\t-189000\t0.000000000000\t0.867850964512\t0.000000000000\t0.000000000000\n-chr1\t4299000\t4300000\tSox17\t978.0\t-188000\t0.000000000000\t0.860889061003\t0.000000000000\t0.000000000000\n-chr1\t4300000\t4301000\tSox17\t978.0\t-187000\t0.000000000000\t0.863889228734\t0.000000000000\t0.000000000000\n-chr1\t4301000\t4302000\tSox17\t978.0\t-186000\t0.000000000000\t0.853953368554\t0.000000000000\t0.000000000000\n-chr1\t4302000\t4303000\tSox17\t978.0\t-185000\t0.000000000000\t0.849507893763\t0.000000000000\t0.000000000000\n-chr1\t4303000\t4304000\tSox17\t978.0\t-184000\t0.000000000000\t0.846001342365\t0.000000000000\t0.000000000000\n-chr1\t4304000\t4305000\tSox17\t978.0\t-183000\t0.000000000000\t0.875951792135\t0.000000000000\t0.000000000000\n-chr1\t4305000\t4306000\tSox17\t978.0\t-182000\t0.000000000000\t0.882361637509\t0.000000000000\t0.000000000000\n+chr1\t4287000\t4288000\tSox17\t978.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4288000\t4289000\tSox17\t978.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4289000\t4290000\tSox17\t978.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4290000\t4291000\tSox17\t978.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t4291000\t4292000\tSox17\t978.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4292000\t4293000\tSox17\t978.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4293000\t4294000\tSox17\t978.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4294000\t4295000\tSox17\t978.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4295000\t4296000\tSox17\t978.0\t-192000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4296000\t4297000\tSox17\t978.0\t-191000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4297000\t4298000\tSox17\t978.0\t-190000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4298000\t4299000\tSox17\t978.0\t-189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4299000\t4300000\tSox17\t978.0\t-188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4300000\t4301000\tSox17\t978.0\t-187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4301000\t4302000\tSox17\t978.0\t-186000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4302000\t4303000\tSox17\t978.0\t-185000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4303000\t4304000\tSox17\t978.0\t-184"..b'0.000613496933\t1.000000000000\t0.737745564637\t0.600000000000\n+chr1\t4649000\t4650000\tSox17\t978.0\t162000\t0.000408997955\t0.998003530647\t0.556069446523\t0.400000000000\n+chr1\t4650000\t4651000\tSox17\t978.0\t163000\t0.000204498978\t0.999352809734\t0.282649407113\t0.200000000000\n+chr1\t4651000\t4652000\tSox17\t978.0\t164000\t0.000204498978\t0.999664588125\t0.294885312271\t0.200000000000\n+chr1\t4652000\t4653000\tSox17\t978.0\t165000\t0.000204498978\t0.999918251505\t0.313910171273\t0.200000000000\n+chr1\t4653000\t4654000\tSox17\t978.0\t166000\t0.000817995910\t0.989304103068\t1.362370144213\t0.800000000000\n+chr1\t4654000\t4655000\tSox17\t978.0\t167000\t0.000817995910\t1.000000000000\t1.303703486817\t0.800000000000\n+chr1\t4655000\t4656000\tSox17\t978.0\t168000\t0.000817995910\t0.999999999417\t1.267321063648\t0.800000000000\n+chr1\t4656000\t4657000\tSox17\t978.0\t169000\t0.001226993865\t0.002791015205\t1.717273288741\t1.200000000000\n+chr1\t4657000\t4658000\tSox17\t978.0\t170000\t0.001226993865\t0.000219787737\t1.661427004800\t1.200000000000\n+chr1\t4658000\t4659000\tSox17\t978.0\t171000\t0.000613496933\t0.981475867334\t0.840969224736\t0.600000000000\n+chr1\t4659000\t4660000\tSox17\t978.0\t172000\t0.000613496933\t0.944032684304\t0.789017457556\t0.600000000000\n+chr1\t4660000\t4661000\tSox17\t978.0\t173000\t0.000613496933\t0.999936032663\t0.804549297394\t0.600000000000\n+chr1\t4661000\t4662000\tSox17\t978.0\t174000\t0.000204498978\t0.999594131731\t0.283827112984\t0.200000000000\n+chr1\t4662000\t4663000\tSox17\t978.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4663000\t4664000\tSox17\t978.0\t176000\t0.000408997955\t1.000000000000\t0.579731975542\t0.400000000000\n+chr1\t4664000\t4665000\tSox17\t978.0\t177000\t0.001022494888\t0.000000000000\t1.548147889979\t1.000000000000\n+chr1\t4665000\t4666000\tSox17\t978.0\t178000\t0.001022494888\t0.000000000000\t1.606568565531\t1.000000000000\n+chr1\t4666000\t4667000\tSox17\t978.0\t179000\t0.001226993865\t0.000000000000\t1.964956938139\t1.200000000000\n+chr1\t4667000\t4668000\tSox17\t978.0\t180000\t0.001226993865\t0.000000000000\t2.074675343272\t1.200000000000\n+chr1\t4668000\t4669000\tSox17\t978.0\t181000\t0.001022494888\t0.000000000000\t1.737717018021\t1.000000000000\n+chr1\t4669000\t4670000\tSox17\t978.0\t182000\t0.000408997955\t1.000000000000\t0.732457065928\t0.400000000000\n+chr1\t4670000\t4671000\tSox17\t978.0\t183000\t0.000613496933\t1.000000000000\t1.064351673689\t0.600000000000\n+chr1\t4671000\t4672000\tSox17\t978.0\t184000\t0.000817995910\t1.000000000000\t1.329141603840\t0.800000000000\n+chr1\t4672000\t4673000\tSox17\t978.0\t185000\t0.000817995910\t1.000000000000\t1.309971292093\t0.800000000000\n+chr1\t4673000\t4674000\tSox17\t978.0\t186000\t0.000817995910\t1.000000000000\t1.449329938854\t0.800000000000\n+chr1\t4674000\t4675000\tSox17\t978.0\t187000\t0.001226993865\t0.000000000000\t2.209248880021\t1.200000000000\n+chr1\t4675000\t4676000\tSox17\t978.0\t188000\t0.001022494888\t0.000000000000\t1.821350457987\t1.000000000000\n+chr1\t4676000\t4677000\tSox17\t978.0\t189000\t0.000817995910\t1.000000000000\t1.584151329559\t0.800000000000\n+chr1\t4677000\t4678000\tSox17\t978.0\t190000\t0.001022494888\t0.000000000000\t1.991769215618\t1.000000000000\n+chr1\t4678000\t4679000\tSox17\t978.0\t191000\t0.001226993865\t0.000000000000\t2.270616904920\t1.200000000000\n+chr1\t4679000\t4680000\tSox17\t978.0\t192000\t0.000817995910\t1.000000000000\t1.497110047078\t0.800000000000\n+chr1\t4680000\t4681000\tSox17\t978.0\t193000\t0.001022494888\t0.000000000000\t2.027336523322\t1.000000000000\n+chr1\t4681000\t4682000\tSox17\t978.0\t194000\t0.000817995910\t1.000000000000\t1.574994385387\t0.800000000000\n+chr1\t4682000\t4683000\tSox17\t978.0\t195000\t0.000613496933\t1.000000000000\t1.253714856445\t0.600000000000\n+chr1\t4683000\t4684000\tSox17\t978.0\t196000\t0.000204498978\t1.000000000000\t0.417904952148\t0.200000000000\n+chr1\t4684000\t4685000\tSox17\t978.0\t197000\t0.001022494888\t0.000000000000\t1.935184862473\t1.000000000000\n+chr1\t4685000\t4686000\tSox17\t978.0\t198000\t0.000817995910\t1.000000000000\t1.335657003912\t0.800000000000\n+chr1\t4686000\t4687000\tSox17\t978.0\t199000\t0.001022494888\t0.000000000000\t1.783206992633\t1.000000000000\n+chr1\t4687000\t4688000\tSox17\t978.0\t200000\t0.001363326517\t0.000000000000\t2.316956024029\t1.333333333333\n'

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/dm3_genes.bed.gz

Binary file test-data/dm3_genes.bed.gz has changed

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/domains.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/domains.bed Wed Feb 05 19:52:52 2020 -0500

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diff -r 2f279a01f3ff -r 1db84db797b1 test-data/hicCompartmentsPolarization/compartmentsPolarizationRatio.png

Binary file test-data/hicCompartmentsPolarization/compartmentsPolarizationRatio.png has changed

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/hicInfo/hicInfo_output.txt
--- a/test-data/hicInfo/hicInfo_output.txt Mon Dec 16 15:37:16 2019 -0500
+++ b/test-data/hicInfo/hicInfo_output.txt Wed Feb 05 19:52:52 2020 -0500

@@ -1,9 +1,9 @@
-# Matrix information file. Created with HiCExplorer's hicInfo version 3.3
+# Matrix information file. Created with HiCExplorer's hicInfo version 3.4
File: matrix_name.h5
Size: 33,754
Bin_length: 5000
Sum of matrix: 35778.0
-Chromosomes: chr2L, chr2LHet, chr2R, chr2RHet, chr3L, chr3LHet, chr3R, chr3RHet, chr4, chrM, chrUextra, chrU, chrX, chrXHet, chrYHet
+Chromosomes:length: chr2L: 23011544 bp; chr2LHet: 368872 bp; chr2R: 21146708 bp; chr2RHet: 3288761 bp; chr3L: 24543557 bp; chr3LHet: 2555491 bp; chr3R: 27905053 bp; chr3RHet: 2517507 bp; chr4: 1351857 bp; chrM: 19517 bp; chrUextra: 29004656 bp; chrU: 10049037 bp; chrX: 22422827 bp; chrXHet: 204112 bp; chrYHet: 347038 bp;
Non-zero elements: 69,213
Minimum (non zero): 1
Maximum: 8

diff -r 2f279a01f3ff -r 1db84db797b1 test-data/small_test_R1_unsorted.sam
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/small_test_R1_unsorted.sam Wed Feb 05 19:52:52 2020 -0500

b'@@ -0,0 +1,1000 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diff -r 2f279a01f3ff -r 1db84db797b1 test-data/small_test_R2_unsorted.sam
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/small_test_R2_unsorted.sam Wed Feb 05 19:52:52 2020 -0500

b'@@ -0,0 +1,1000 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diff -r 2f279a01f3ff -r 1db84db797b1 test-data/small_test_matrix.h5

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