| Previous changeset 1:a5f787bfe69e (2017-11-09) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/enasearch commit a0adc28145cce02ecaed3a90156ed54c4385d1a0" |
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modified:
enasearch_retrieve_analysis_report.xml macros.xml test-data/retrieve_run_report_output1.tabular |
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removed:
test-data/retrieve_analysis_report_output1.tabular |
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| diff -r a5f787bfe69e -r 1e25f66e4acc enasearch_retrieve_analysis_report.xml --- a/enasearch_retrieve_analysis_report.xml Thu Nov 09 13:07:49 2017 -0500 +++ b/enasearch_retrieve_analysis_report.xml Tue Jan 21 19:04:54 2020 -0500 |
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| @@ -25,7 +25,14 @@ <tests> <test> <param name="accession" value="ERZ009929"/> - <output name="output" file="retrieve_analysis_report_output1.tabular"/> + <output name="output"> + <assert_contents> + <has_n_lines n="2"/> + <has_text text="ERZ009929"/> + <has_text text="Solanum lycopersicum"/> + <has_text text="256c09cc87e998c73a6b31ab34b562a4"/> + </assert_contents> + </output> </test> <test> <param name="accession" value="ERZ009929"/> |
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| diff -r a5f787bfe69e -r 1e25f66e4acc macros.xml --- a/macros.xml Thu Nov 09 13:07:49 2017 -0500 +++ b/macros.xml Tue Jan 21 19:04:54 2020 -0500 |
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| @@ -2,7 +2,7 @@ <macros> <token name="@WRAPPER_VERSION@">0.1.1</token> <xml name="version"> - <version_command>@WRAPPER_VERSION@</version_command> + <version_command>echo @WRAPPER_VERSION@</version_command> </xml> <xml name="requirements"> <requirements> |
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| diff -r a5f787bfe69e -r 1e25f66e4acc test-data/retrieve_analysis_report_output1.tabular --- a/test-data/retrieve_analysis_report_output1.tabular Thu Nov 09 13:07:49 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,2 +0,0 @@ -analysis_accession study_accession secondary_study_accession sample_accession secondary_sample_accession analysis_title analysis_type center_name first_public last_updated study_title tax_id scientific_name analysis_alias study_alias submitted_bytes submitted_md5 submitted_ftp submitted_aspera submitted_galaxy sample_alias broker_name -ERZ009929 PRJEB1970 ERP002648 SAMEA2072680 ERS246980 Using a perclinal chimera to determine layer-specific gene expression: S. lycopersicum leaf analysis REFERENCE_ALIGNMENT ICL-CFB 2013-10-30 2016-06-17 Using a perclinal chimera to determine layer-specific gene expression 4081 Solanum lycopersicum 1: lycopersicum leaf analysis periclinal chimera study 799096;589364146 256c09cc87e998c73a6b31ab34b562a4;3c1e93f150aa843d6b7f06165c182a51 ftp.sra.ebi.ac.uk/vol1/ERZ009/ERZ009929/1.bam.bai;ftp.sra.ebi.ac.uk/vol1/ERZ009/ERZ009929/1.bam fasp.sra.ebi.ac.uk:/vol1/ERZ009/ERZ009929/1.bam.bai;fasp.sra.ebi.ac.uk:/vol1/ERZ009/ERZ009929/1.bam ftp.sra.ebi.ac.uk/vol1/ERZ009/ERZ009929/1.bam.bai;ftp.sra.ebi.ac.uk/vol1/ERZ009/ERZ009929/1.bam 1: lycopersicum leaf |
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| diff -r a5f787bfe69e -r 1e25f66e4acc test-data/retrieve_run_report_output1.tabular --- a/test-data/retrieve_run_report_output1.tabular Thu Nov 09 13:07:49 2017 -0500 +++ b/test-data/retrieve_run_report_output1.tabular Tue Jan 21 19:04:54 2020 -0500 |
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| @@ -1,2 +1,2 @@ study_accession secondary_study_accession sample_accession secondary_sample_accession experiment_accession run_accession submission_accession tax_id scientific_name instrument_platform instrument_model library_name nominal_length library_layout library_strategy library_source library_selection read_count base_count center_name first_public last_updated experiment_title study_title study_alias experiment_alias run_alias fastq_bytes fastq_md5 fastq_ftp fastq_aspera fastq_galaxy submitted_bytes submitted_md5 submitted_ftp submitted_aspera submitted_galaxy submitted_format sra_bytes sra_md5 sra_ftp sra_aspera sra_galaxy cram_index_ftp cram_index_aspera cram_index_galaxy sample_alias broker_name -PRJNA123835 SRP002056 SAMN00009557 SRS011830 SRX017289 SRR037073 SRA012156 6239 Caenorhabditis elegans ILLUMINA Illumina Genome Analyzer II small RNAs_wild type (fog-2)_adult males_part1 SINGLE RNA-Seq TRANSCRIPTOMIC size fractionation 1068858 38478888 GEO 2010-04-09 2010-04-09 Illumina Genome Analyzer II sequencing; GSM465245: small RNAs_wild type (fog-2)_adult males_part1 High throughput sequencing of endogenous small RNAs from AGO pathway mutants GSE18729 small RNAs_wild type (fog-2)_adult males_part1 GSM465245_1 25154397 89359f77f5870d2b563ebd77baeeeaf6 ftp.sra.ebi.ac.uk/vol1/fastq/SRR037/SRR037073/SRR037073.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/SRR037/SRR037073/SRR037073.fastq.gz ftp.sra.ebi.ac.uk/vol1/fastq/SRR037/SRR037073/SRR037073.fastq.gz 18013387 58a1c3a66ce6414a240e4ea83449db49 ftp.sra.ebi.ac.uk/vol1/srr/SRR037/SRR037073 fasp.sra.ebi.ac.uk:/vol1/srr/SRR037/SRR037073 ftp.sra.ebi.ac.uk/vol1/srr/SRR037/SRR037073 GSM465245 +PRJNA123835 SRP002056 SAMN00009557 SRS011830 SRX017289 SRR037073 SRA012156 6239 Caenorhabditis elegans ILLUMINA Illumina Genome Analyzer II small RNAs_wild type (fog-2)_adult males_part1 SINGLE RNA-Seq TRANSCRIPTOMIC size fractionation 1068858 38478888 GEO 2010-04-09 2015-06-19 Illumina Genome Analyzer II sequencing; GSM465245: small RNAs_wild type (fog-2)_adult males_part1 High throughput sequencing of endogenous small RNAs from AGO pathway mutants GSE18729 small RNAs_wild type (fog-2)_adult males_part1 GSM465245_1 25154397 89359f77f5870d2b563ebd77baeeeaf6 ftp.sra.ebi.ac.uk/vol1/fastq/SRR037/SRR037073/SRR037073.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/SRR037/SRR037073/SRR037073.fastq.gz ftp.sra.ebi.ac.uk/vol1/fastq/SRR037/SRR037073/SRR037073.fastq.gz 18013387 58a1c3a66ce6414a240e4ea83449db49 ftp.sra.ebi.ac.uk/vol1/srr/SRR037/SRR037073 fasp.sra.ebi.ac.uk:/vol1/srr/SRR037/SRR037073 ftp.sra.ebi.ac.uk/vol1/srr/SRR037/SRR037073 GSM465245 |